RchiOBHm_Chr1g0353511

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000170
Physical Location & Seq
Forward (+)
46728942 .. 46730444
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57914

Sequence Viewer

Length: 981 bp
ATGGCGGAATCAACTAAGACGTACTACTACTACACATCTGTAACACAGTTTATTTCTTCTTTTTCTTCTCTCTTTCTGAACTTGCTTCTCGTGTTTTCCTGGTATGCAGTTGTGACAGGATCAAACAAAGGAATCGGATTCGAAACTGTAAGGCAGTTGGCCTCAAAGGGAATCACTGTGGTGTTAACTGCTAGAGACGAGAAGAGGGGCCTTGAAGCTGTTGAGAAACTGAAAGAATCTGGTCTCTCAGGCCAAGTTGTTTTTCACCAACTTGATGTGGCTGACCCTGCTAGTATTGCTTCTCTGGCACAATTCATCAAAACACAGTATGGAAGACTCGATATTTTGGTGAACAATGCTGCGATTTTTGGAGCTATAATTGATAATACTGATGATTTTAAAGCTGCAATTGAATCTGGTGCTGGACCAGGACAGATTGATTATACAAAGTTGCTGACTGAAACTTATGAGTTAACAGAAGAATGCTTGCAAATCAATTATTATGGTGCTAAAAGAACAGCTGAAGCACTAATTCCACTCCTCCAGCTATCTGATTCACCAAGGATTGTTAATGTTTCATCCTCCGGGGGGAAGTTAAAGAACATACCAAGTGATCGAGTGAAAGCAGTTCTTAGTACTGATGTCGAGAACCTGAGCGAAGAGAGTGTAGATGAAATATTAACAGAGTTTCTAAACGACCTCAAGGAGAATTTACTTGAAAGCAAGGGTTGGCCTCCTGCGATGTCAGGCTATATACTCTCAAAGGCAGCAATGAATGCATATTCGAGGATTCTAGCCAAGAAGTACCCCGGTTTTCGTGTCAACTCTGTCTGCCCTGGCTATGTCAAAACAGATATAAACTTCAATACTGGTGTCTTGCCTGTTGAAGAAGGTGCTGCAAGTGTCGTGAATTTAGCATTGCTGCCTAATGATGGCCCCACAGGCCAATTCTTTTTTCTGTCTGAAGTACAAAGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

326

Amino Acids

35.52

Weight (kDa)

4.87

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 36 - 200 1.8e-26 short chain dehydrogenase
KR PF08659 37 - 123 9.5e-07 KR domain
adh_short_C2 PF13561 42 - 198 1.2e-18 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 127
AcsI RAATTY 2 cut(s) 709, 910
AcuI CTGAAG 1 cut(s) 543
AfaI GTAC 4 cut(s) 23, 637, 806, 969
AfiI CCNNNNNNNGG 2 cut(s) 588, 932
AgsI TTSAA 5 cut(s) 215, 413, 719, 865, 887
AjnI CCWGG 3 cut(s) 98, 427, 835
AjuI GAANNNNNNNTTGG 4 cut(s) 246, 278, 939, 971
AleI CACNNNNGTG 1 cut(s) 179
AluBI AGCT 5 cut(s) 218, 374, 404, 521, 547
AluI AGCT 5 cut(s) 218, 374, 404, 521, 547
Alw26I GTCTC 2 cut(s) 189, 248
AlwI GGATC 1 cut(s) 127
AoxI GGCC 6 cut(s) 159, 208, 250, 731, 934, 943
ApeKI GCWGC 5 cut(s) 359, 404, 767, 896, 922
ApoI RAATTY 2 cut(s) 709, 910
AspS9I GGNCC 3 cut(s) 208, 425, 935
AsuC2I CCSGG 2 cut(s) 586, 810
AsuHPI GGTGA 3 cut(s) 257, 361, 549
AsuII TTCGAA 1 cut(s) 141
AvaII GGWCC 1 cut(s) 425
BauI CACGAG 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 340
BbvI GCAGC 5 cut(s) 346, 391, 779, 883, 909
BccI CCATC 1 cut(s) 926
BciT130I CCWGG 3 cut(s) 100, 429, 837
BcnI CCSGG 2 cut(s) 586, 810
BcoDI GTCTC 2 cut(s) 189, 248
BfaI CTAG 3 cut(s) 192, 291, 794
BglI GCCNNNNNGGC 1 cut(s) 942
BisI GCNGC 5 cut(s) 360, 405, 768, 897, 923
BlsI GCNGC 5 cut(s) 361, 406, 769, 898, 924
BmcAI AGTACT 1 cut(s) 637
Bme1390I CCNGG 5 cut(s) 100, 429, 586, 810, 837
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 3 cut(s) 208, 425, 935
BmiI GGNNCC 2 cut(s) 209, 937
BmrFI CCNGG 5 cut(s) 100, 429, 586, 810, 837
BpiI GAAGAC 1 cut(s) 340
BpmI CTGGAG 1 cut(s) 527
Bpu10I CCTNAGC 1 cut(s) 653
Bpu14I TTCGAA 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 686
BpuMI CCSGG 2 cut(s) 586, 810
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 4 cut(s) 560, 585, 808, 835
Bsc4I CCNNNNNNNGG 2 cut(s) 588, 932
Bse1I ACTGG 1 cut(s) 874
Bse3DI GCAATG 2 cut(s) 777, 917
BseBI CCWGG 3 cut(s) 100, 429, 837
BseDI CCNNGG 4 cut(s) 560, 585, 808, 835
BseGI GGATG 1 cut(s) 578
BseLI CCNNNNNNNGG 2 cut(s) 588, 932
BseMI GCAATG 2 cut(s) 777, 917
BseMII CTCAG 2 cut(s) 261, 644
BseNI ACTGG 1 cut(s) 874
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 5 cut(s) 346, 391, 779, 883, 909
BshFI GGCC 6 cut(s) 161, 210, 252, 733, 936, 945
BsiSI CCGG 2 cut(s) 585, 810
BslI CCNNNNNNNGG 2 cut(s) 588, 932
BsmAI GTCTC 2 cut(s) 189, 248
BsmBI CGTCTC 1 cut(s) 189
BsmI GAATGC 2 cut(s) 488, 781
BsnI GGCC 6 cut(s) 161, 210, 252, 733, 936, 945
Bso31I GGTCTC 1 cut(s) 248
Bsp119I TTCGAA 1 cut(s) 141
Bsp143I GATC 2 cut(s) 119, 613
BspACI CCGC 1 cut(s) 5
BspANI GGCC 6 cut(s) 161, 210, 252, 733, 936, 945
BspCNI CTCAG 2 cut(s) 260, 645
BspLI GGNNCC 2 cut(s) 209, 937
BspPI GGATC 1 cut(s) 127
BspT104I TTCGAA 1 cut(s) 141
BspTNI GGTCTC 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 777, 917
BsrI ACTGG 1 cut(s) 874
BssECI CCNNGG 4 cut(s) 560, 585, 808, 835
BssMI GATC 2 cut(s) 119, 613
BssSI CACGAG 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 560
Bst2BI CACGAG 1 cut(s) 89
Bst2UI CCWGG 3 cut(s) 100, 429, 837
Bst4CI ACNGT 4 cut(s) 48, 148, 178, 327
Bst6I CTCTTC 2 cut(s) 197, 654
BstAPI GCANNNNNTGC 1 cut(s) 776
BstBI TTCGAA 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 488
BstDEI CTNAG 4 cut(s) 15, 247, 632, 653
BstF5I GGATG 1 cut(s) 578
BstKTI GATC 2 cut(s) 122, 616
BstMAI GTCTC 2 cut(s) 189, 248
BstMBI GATC 2 cut(s) 119, 613
BstMWI GCNNNNNNNGC 5 cut(s) 287, 296, 305, 776, 942
BstNI CCWGG 3 cut(s) 100, 429, 837
BstSCI CCNGG 5 cut(s) 98, 427, 584, 808, 835
BstV1I GCAGC 5 cut(s) 346, 391, 779, 883, 909
BstV2I GAAGAC 1 cut(s) 340
BsuRI GGCC 6 cut(s) 161, 210, 252, 733, 936, 945
BtgZI GCGATG 1 cut(s) 755
BtsCI GGATG 1 cut(s) 578
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 488
Cfr13I GGNCC 3 cut(s) 208, 425, 935
Csp6I GTAC 4 cut(s) 22, 636, 805, 968
CviQI GTAC 4 cut(s) 22, 636, 805, 968
DdeI CTNAG 4 cut(s) 15, 247, 632, 653
DpnI GATC 2 cut(s) 121, 615
DpnII GATC 2 cut(s) 119, 613
DraI TTTAAA 1 cut(s) 400
Eam1104I CTCTTC 2 cut(s) 197, 654
EarI CTCTTC 2 cut(s) 197, 654
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 560
Eco31I GGTCTC 1 cut(s) 248
Eco47I GGWCC 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 543
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 3 cut(s) 98, 427, 835
EcoT14I CCWWGG 1 cut(s) 560
EcoT22I ATGCAT 1 cut(s) 781
ErhI CCWWGG 1 cut(s) 560
Esp3I CGTCTC 1 cut(s) 189
FalI AAGNNNNNCTT 2 cut(s) 615, 647
Fnu4HI GCNGC 5 cut(s) 360, 405, 768, 897, 923
FokI GGATG 1 cut(s) 565
Fsp4HI GCNGC 5 cut(s) 360, 405, 768, 897, 923
FspBI CTAG 3 cut(s) 192, 291, 794
GluI GCNGC 5 cut(s) 360, 405, 768, 897, 923
GsuI CTGGAG 1 cut(s) 527
HaeIII GGCC 6 cut(s) 161, 210, 252, 733, 936, 945
HapII CCGG 2 cut(s) 585, 810
HincII GTYRAC 3 cut(s) 186, 474, 823
HindII GTYRAC 3 cut(s) 186, 474, 823
HinfI GANTC 9 cut(s) 8, 132, 138, 171, 236, 336, 413, 554, 790
HpaI GTTAAC 2 cut(s) 186, 474
HpaII CCGG 2 cut(s) 585, 810
HphI GGTGA 3 cut(s) 257, 361, 549
Hpy166II GTNNAC 4 cut(s) 186, 352, 474, 823
Hpy188I TCNGA 4 cut(s) 78, 137, 553, 964
Hpy188III TCNNGA 2 cut(s) 646, 907
Hpy8I GTNNAC 4 cut(s) 186, 352, 474, 823
HpyAV CCTTC 1 cut(s) 884
HpyCH4III ACNGT 4 cut(s) 48, 148, 178, 327
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 5 cut(s) 107, 407, 490, 779, 899
HpyF10VI GCNNNNNNNGC 5 cut(s) 287, 296, 305, 776, 942
HpyF3I CTNAG 4 cut(s) 15, 247, 632, 653
HpySE526I ACGT 1 cut(s) 20
KspAI GTTAAC 2 cut(s) 186, 474
Kzo9I GATC 2 cut(s) 119, 613
LmnI GCTCC 1 cut(s) 371
Lsp1109I GCAGC 5 cut(s) 346, 391, 779, 883, 909
MaeI CTAG 3 cut(s) 192, 291, 794
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 2 cut(s) 40, 112
MalI GATC 2 cut(s) 121, 615
MboI GATC 2 cut(s) 119, 613
MboII GAAGA 7 cut(s) 48, 57, 214, 345, 491, 671, 899
MfeI CAATTG 1 cut(s) 408
MluCI AATT 8 cut(s) 311, 378, 408, 496, 531, 709, 910, 947
MlyI GAGTC 1 cut(s) 330
MnlI CCTC 7 cut(s) 172, 198, 551, 592, 710, 744, 780
Mph1103I ATGCAT 1 cut(s) 781
MseI TTAA 7 cut(s) 185, 399, 473, 570, 596, 680, 979
MslI CAYNNNNRTG 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 521
MspI CCGG 2 cut(s) 585, 810
MspR9I CCNGG 5 cut(s) 100, 429, 586, 810, 837
MunI CAATTG 1 cut(s) 408
Mva1269I GAATGC 2 cut(s) 488, 781
MvaI CCWGG 3 cut(s) 100, 429, 837
MwoI GCNNNNNNNGC 5 cut(s) 287, 296, 305, 776, 942
NciI CCSGG 2 cut(s) 586, 810
NdeII GATC 2 cut(s) 119, 613
NlaIV GGNNCC 2 cut(s) 209, 937
NmuCI GTSAC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 781
NspV TTCGAA 1 cut(s) 141
OliI CACNNNNGTG 1 cut(s) 179
PctI GAATGC 2 cut(s) 488, 781
PfeI GAWTC 8 cut(s) 8, 132, 138, 171, 236, 413, 554, 790
PkrI GCNGC 5 cut(s) 361, 406, 769, 898, 924
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
Psp6I CCWGG 3 cut(s) 98, 427, 835
PspGI CCWGG 3 cut(s) 98, 427, 835
PspN4I GGNNCC 2 cut(s) 209, 937
PspPI GGNCC 3 cut(s) 208, 425, 935
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 4 cut(s) 23, 637, 806, 969
RsaNI GTAC 4 cut(s) 22, 636, 805, 968
RseI CAYNNNNRTG 1 cut(s) 179
SaqAI TTAA 7 cut(s) 185, 399, 473, 570, 596, 680, 979
SatI GCNGC 5 cut(s) 360, 405, 768, 897, 923
Sau3AI GATC 2 cut(s) 119, 613
Sau96I GGNCC 3 cut(s) 208, 425, 935
ScaI AGTACT 1 cut(s) 637
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 5 cut(s) 100, 429, 586, 810, 837
SetI ASST 9 cut(s) 23, 220, 376, 406, 523, 549, 654, 702, 895
SfiI GGCCNNNNNGGCC 1 cut(s) 942
SfuI TTCGAA 1 cut(s) 141
SinI GGWCC 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 701
SmoI CTYRAG 1 cut(s) 701
Sse9I AATT 8 cut(s) 311, 378, 408, 496, 531, 709, 910, 947
SsiI CCGC 1 cut(s) 5
SspI AATATT 1 cut(s) 678
SspMI CTAG 3 cut(s) 192, 291, 794
StyD4I CCNGG 5 cut(s) 98, 427, 584, 808, 835
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 4 cut(s) 48, 148, 178, 327
TaiI ACGT 1 cut(s) 23
TaqI TCGA 5 cut(s) 141, 339, 616, 645, 785
TasI AATT 8 cut(s) 311, 378, 408, 496, 531, 709, 910, 947
TatI WGTACW 2 cut(s) 635, 967
TfiI GAWTC 8 cut(s) 8, 132, 138, 171, 236, 413, 554, 790
Tru1I TTAA 7 cut(s) 185, 399, 473, 570, 596, 680, 979
Tru9I TTAA 7 cut(s) 185, 399, 473, 570, 596, 680, 979
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 5 cut(s) 359, 404, 767, 896, 922
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 4 cut(s) 304, 567, 687, 788
TspRI CASTG 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 425
XapI RAATTY 2 cut(s) 709, 910
XspI CTAG 3 cut(s) 192, 291, 794
ZrmI AGTACT 1 cut(s) 637
Zsp2I ATGCAT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.