AT1G80110

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000189
Physical Location & Seq
Forward (+)
30135024 .. 30136956
1933 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80110.1

Sequence Viewer

Length: 774 bp
ATGAATAATCTCCCAGAAGATTGCATCGCCAAGATCCTTTCCTTGACAACTCCTCTCGACGTTTGCCGTTTATCGGCGGTCTCCAGTATCTTCAGATCCGCCGCCGGCTCCGACGATGTCTGGAATCATTTCTTACCGGCTGATTTCCCCGCCGGCTTTGCGGCACCTGCTGGTCTTCCCACCAGGAAGCAACTCTTCTTCTCCCTCGTCGATAACCCTCTTCTTATCAACGGCACTCTTTTGAGCTTTTCGCTGGAGAGAAAGAGTGGCAACAAGTGCTACATGATGGCAGCGAGGGCCTTGAATATTGTTTGGGGACATGAGCAAAGATACTGGCACTGGATCTCTCTCCCTAACACCAGGTTCGGAGAAGTGGCTGAGCTCATCATGGTCTGGTGGCTTGAGATCACTGGCAAGATCAACATTACCCTTCTCTCTGATGACACCCTCTACGCCGCTTACTTCGTCTTTAAGTGGAACCATAGTCCTTACGGTTTTCGCCAGCCTGTAGAAACCTCCCTTGTCTTGGCTGACACCGAGAGCACTGACAATGTTGTTCAGCCTTCCATGATTAGTCTCATGCAAGATTCAGGCGGCGAAGAAGGTCAGTCCCCTGTGCTGAGAAGAGACGGTTGGTACGAGGTTGAATTGGGACAGTTCTTTAAAAGGAGAGGAGATTTGGGTGAAATAGAGATGAGCCTCAAGGAGACAAAGGGTCCTTATGAGAAGAAGGGCCTTATTGTTTATGGCATCGAGATTAGACCAGTGCCCTAA

Protein Analysis

257

Amino Acids

28.98

Weight (kDa)

5.31

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 1 - 44 7.3e-07 F-box-like
F-box PF00646 2 - 42 9.3e-08 F-box domain
PP2 PF14299 92 - 255 1.9e-51 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 175
Acc36I ACCTGC 1 cut(s) 175
AccB1I GGYRCC 1 cut(s) 163
AciI CCGC 7 cut(s) 77, 99, 102, 150, 161, 456, 594
AclWI GGATC 3 cut(s) 28, 90, 350
AcuI CTGAAG 1 cut(s) 76
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 2 cut(s) 73, 526
AgsI TTSAA 2 cut(s) 304, 647
AhdI GACNNNNNGTC 1 cut(s) 714
AjnI CCWGG 2 cut(s) 182, 359
AjuI GAANNNNNNNTTGG 2 cut(s) 616, 648
AluBI AGCT 2 cut(s) 246, 382
AluI AGCT 2 cut(s) 246, 382
Alw21I GWGCWC 2 cut(s) 384, 545
Alw26I GTCTC 4 cut(s) 85, 581, 621, 701
AlwI GGATC 3 cut(s) 28, 90, 350
AoxI GGCC 2 cut(s) 297, 733
ApeKI GCWGC 1 cut(s) 290
Asp700I GAANNNNTTC 1 cut(s) 128
AspS9I GGNCC 3 cut(s) 297, 716, 733
AsuHPI GGTGA 1 cut(s) 695
AvaII GGWCC 1 cut(s) 716
BaeGI GKGCMC 1 cut(s) 771
BanI GGYRCC 1 cut(s) 163
BanII GRGCYC 1 cut(s) 384
BbsI GAAGAC 1 cut(s) 167
Bbv12I GWGCWC 2 cut(s) 384, 545
BbvI GCAGC 1 cut(s) 302
BccI CCATC 1 cut(s) 280
BceAI ACGGC 2 cut(s) 51, 247
BciT130I CCWGG 2 cut(s) 184, 361
BcoDI GTCTC 4 cut(s) 85, 581, 621, 701
BfmI CTRYAG 1 cut(s) 507
BfuAI ACCTGC 1 cut(s) 175
BisI GCNGC 5 cut(s) 102, 162, 291, 456, 595
BlpI GCTNAGC 1 cut(s) 378
BlsI GCNGC 5 cut(s) 103, 163, 292, 457, 596
Bme1390I CCNGG 2 cut(s) 184, 361
Bme18I GGWCC 1 cut(s) 716
BmeRI GACNNNNNGTC 1 cut(s) 714
BmgT120I GGNCC 3 cut(s) 297, 716, 733
BmiI GGNNCC 4 cut(s) 109, 165, 479, 717
BmrFI CCNGG 2 cut(s) 184, 361
BmsI GCATC 2 cut(s) 33, 759
BpiI GAAGAC 1 cut(s) 167
BpmI CTGGAG 2 cut(s) 67, 275
Bpu1102I GCTNAGC 1 cut(s) 378
BpuEI CTTGAG 2 cut(s) 422, 686
BsaI GGTCTC 1 cut(s) 85
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 526
Bse118I RCCGGY 3 cut(s) 104, 136, 152
Bse1I ACTGG 5 cut(s) 84, 338, 344, 415, 764
BseBI CCWGG 2 cut(s) 184, 361
BseLI CCNNNNNNNGG 2 cut(s) 73, 526
BseMII CTCAG 2 cut(s) 369, 611
BseNI ACTGG 5 cut(s) 84, 338, 344, 415, 764
BseRI GAGGAG 2 cut(s) 42, 687
BseSI GKGCMC 1 cut(s) 771
BseXI GCAGC 1 cut(s) 302
BshFI GGCC 2 cut(s) 299, 735
BshNI GGYRCC 1 cut(s) 163
BsiHKAI GWGCWC 2 cut(s) 384, 545
BsiSI CCGG 3 cut(s) 105, 137, 153
BslFI GGGAC 3 cut(s) 330, 595, 666
BslI CCNNNNNNNGG 2 cut(s) 73, 526
BsmAI GTCTC 4 cut(s) 85, 581, 621, 701
BsmBI CGTCTC 1 cut(s) 621
BsmFI GGGAC 3 cut(s) 330, 595, 666
BsnI GGCC 2 cut(s) 299, 735
Bso31I GGTCTC 1 cut(s) 85
Bsp1286I GDGCHC 3 cut(s) 384, 545, 771
Bsp143I GATC 5 cut(s) 33, 95, 342, 405, 417
Bsp1720I GCTNAGC 1 cut(s) 378
BspACI CCGC 7 cut(s) 77, 99, 102, 150, 161, 456, 594
BspANI GGCC 2 cut(s) 299, 735
BspCNI CTCAG 2 cut(s) 370, 612
BspLI GGNNCC 4 cut(s) 109, 165, 479, 717
BspMI ACCTGC 1 cut(s) 175
BspPI GGATC 3 cut(s) 28, 90, 350
BspT107I GGYRCC 1 cut(s) 163
BspTNI GGTCTC 1 cut(s) 85
BsrFI RCCGGY 3 cut(s) 104, 136, 152
BsrI ACTGG 5 cut(s) 84, 338, 344, 415, 764
BssAI RCCGGY 3 cut(s) 104, 136, 152
BssMI GATC 5 cut(s) 33, 95, 342, 405, 417
Bst2UI CCWGG 2 cut(s) 184, 361
Bst4CI ACNGT 3 cut(s) 494, 632, 657
Bst6I CTCTTC 3 cut(s) 200, 225, 619
BstAPI GCANNNNNTGC 1 cut(s) 276
BstC8I GCNNGC 3 cut(s) 106, 154, 503
BstDEI CTNAG 2 cut(s) 378, 620
BstKTI GATC 5 cut(s) 36, 98, 345, 408, 420
BstMAI GTCTC 4 cut(s) 85, 581, 621, 701
BstMBI GATC 5 cut(s) 33, 95, 342, 405, 417
BstMWI GCNNNNNNNGC 4 cut(s) 158, 167, 276, 296
BstNI CCWGG 2 cut(s) 184, 361
BstSCI CCNGG 2 cut(s) 182, 359
BstSFI CTRYAG 1 cut(s) 507
BstSLI GKGCMC 1 cut(s) 771
BstV1I GCAGC 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 167
BstX2I RGATCY 3 cut(s) 33, 95, 342
BstYI RGATCY 3 cut(s) 33, 95, 342
BsuRI GGCC 2 cut(s) 299, 735
BtgZI GCGATG 1 cut(s) 10
BtsIMutI CAGTG 4 cut(s) 337, 408, 543, 771
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 3 cut(s) 106, 154, 503
Cfr10I RCCGGY 3 cut(s) 104, 136, 152
Cfr13I GGNCC 3 cut(s) 297, 716, 733
CsiI ACCWGGT 1 cut(s) 359
Csp6I GTAC 1 cut(s) 637
CviAII CATG 5 cut(s) 283, 320, 388, 568, 580
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 2 cut(s) 378, 620
DpnI GATC 5 cut(s) 35, 97, 344, 407, 419
DpnII GATC 5 cut(s) 33, 95, 342, 405, 417
DraI TTTAAA 1 cut(s) 664
DriI GACNNNNNGTC 1 cut(s) 714
Eam1104I CTCTTC 3 cut(s) 200, 225, 619
Eam1105I GACNNNNNGTC 1 cut(s) 714
EarI CTCTTC 3 cut(s) 200, 225, 619
EciI GGCGGA 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 382
Eco24I GRGCYC 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 716
Eco53kI GAGCTC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 382
EcoO109I RGGNCCY 3 cut(s) 297, 716, 733
EcoRII CCWGG 2 cut(s) 182, 359
EcoT38I GRGCYC 1 cut(s) 384
Esp3I CGTCTC 1 cut(s) 621
FaeI CATG 5 cut(s) 286, 323, 391, 571, 583
FaiI YATR 8 cut(s) 284, 321, 389, 483, 569, 581, 723, 747
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FaqI GGGAC 3 cut(s) 330, 595, 666
FatI CATG 5 cut(s) 282, 319, 387, 567, 579
FauI CCCGC 1 cut(s) 157
Fnu4HI GCNGC 5 cut(s) 102, 162, 291, 456, 595
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 5 cut(s) 102, 162, 291, 456, 595
GluI GCNGC 5 cut(s) 102, 162, 291, 456, 595
GsuI CTGGAG 2 cut(s) 67, 275
HaeIII GGCC 2 cut(s) 299, 735
HapII CCGG 3 cut(s) 105, 137, 153
Hin1II CATG 5 cut(s) 286, 323, 391, 571, 583
HinfI GANTC 2 cut(s) 124, 587
HpaII CCGG 3 cut(s) 105, 137, 153
HphI GGTGA 1 cut(s) 695
Hpy188I TCNGA 4 cut(s) 95, 112, 368, 439
Hpy188III TCNNGA 3 cut(s) 56, 121, 754
Hpy99I CGWCG 3 cut(s) 62, 116, 212
HpyAV CCTTC 4 cut(s) 440, 573, 596, 724
HpyCH4III ACNGT 3 cut(s) 494, 632, 657
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 24, 583
HpyF10VI GCNNNNNNNGC 4 cut(s) 158, 167, 276, 296
HpyF3I CTNAG 2 cut(s) 378, 620
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 5 cut(s) 286, 323, 391, 571, 583
KroI GCCGGC 2 cut(s) 104, 152
KroNI GCCGGC 2 cut(s) 106, 154
Kzo9I GATC 5 cut(s) 33, 95, 342, 405, 417
LmnI GCTCC 1 cut(s) 113
Lsp1109I GCAGC 1 cut(s) 302
LweI GCATC 2 cut(s) 33, 759
MabI ACCWGGT 1 cut(s) 359
MaeII ACGT 1 cut(s) 60
MalI GATC 5 cut(s) 35, 97, 344, 407, 419
MboI GATC 5 cut(s) 33, 95, 342, 405, 417
MboII GAAGA 9 cut(s) 29, 82, 167, 187, 190, 212, 611, 636, 739
MflI RGATCY 3 cut(s) 33, 95, 342
MhlI GDGCHC 3 cut(s) 384, 545, 771
MluCI AATT 1 cut(s) 647
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 9 cut(s) 63, 215, 228, 288, 458, 526, 634, 665, 710
MroNI GCCGGC 2 cut(s) 104, 152
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 2 cut(s) 471, 663
MspI CCGG 3 cut(s) 105, 137, 153
MspR9I CCNGG 2 cut(s) 184, 361
MvaI CCWGG 2 cut(s) 184, 361
MwoI GCNNNNNNNGC 4 cut(s) 158, 167, 276, 296
NaeI GCCGGC 2 cut(s) 106, 154
NdeII GATC 5 cut(s) 33, 95, 342, 405, 417
NgoMIV GCCGGC 2 cut(s) 104, 152
NlaIII CATG 5 cut(s) 286, 323, 391, 571, 583
NlaIV GGNNCC 4 cut(s) 109, 165, 479, 717
PaqCI CACCTGC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 636
PdiI GCCGGC 2 cut(s) 106, 154
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 124, 587
PflFI GACNNNGTC 1 cut(s) 116
PkrI GCNGC 5 cut(s) 103, 163, 292, 457, 596
PpuMI RGGWCCY 1 cut(s) 716
Psp124BI GAGCTC 1 cut(s) 384
Psp5II RGGWCCY 1 cut(s) 716
Psp6I CCWGG 2 cut(s) 182, 359
PspGI CCWGG 2 cut(s) 182, 359
PspN4I GGNNCC 4 cut(s) 109, 165, 479, 717
PspPI GGNCC 3 cut(s) 297, 716, 733
PspPPI RGGWCCY 1 cut(s) 716
PsuI RGATCY 3 cut(s) 33, 95, 342
PsyI GACNNNGTC 1 cut(s) 116
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SacI GAGCTC 1 cut(s) 384
SaqAI TTAA 2 cut(s) 471, 663
SatI GCNGC 5 cut(s) 102, 162, 291, 456, 595
Sau3AI GATC 5 cut(s) 33, 95, 342, 405, 417
Sau96I GGNCC 3 cut(s) 297, 716, 733
ScrFI CCNGG 2 cut(s) 184, 361
SduI GDGCHC 3 cut(s) 384, 545, 771
SetI ASST 8 cut(s) 63, 169, 248, 365, 384, 518, 607, 645
SexAI ACCWGGT 1 cut(s) 359
SfaNI GCATC 2 cut(s) 33, 759
SfcI CTRYAG 1 cut(s) 507
SinI GGWCC 1 cut(s) 716
SmlI CTYRAG 2 cut(s) 401, 701
SmoI CTYRAG 2 cut(s) 401, 701
Sse9I AATT 1 cut(s) 647
SsiI CCGC 7 cut(s) 77, 99, 102, 150, 161, 456, 594
SspI AATATT 1 cut(s) 307
SstI GAGCTC 1 cut(s) 384
StyD4I CCNGG 2 cut(s) 182, 359
TaaI ACNGT 3 cut(s) 494, 632, 657
TaiI ACGT 1 cut(s) 63
TaqI TCGA 3 cut(s) 57, 210, 753
TasI AATT 1 cut(s) 647
TauI GCSGC 4 cut(s) 104, 164, 458, 597
TfiI GAWTC 2 cut(s) 124, 587
Tru1I TTAA 2 cut(s) 471, 663
Tru9I TTAA 2 cut(s) 471, 663
TscAI CASTG 4 cut(s) 344, 415, 550, 771
TseI GCWGC 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 4 cut(s) 344, 415, 550, 771
Tth111I GACNNNGTC 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 716
XmnI GAANNNNTTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.