Rw3G000960

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000189
Physical Location & Seq
Forward (+)
730310 .. 736747
6438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G000960.1

Sequence Viewer

Length: 861 bp
ATGAATAGGAGGAGGAGGAATCATATGCAGCATCTAGACTTGCAAGCGTTGCCGGAAGGATGCATTGCCAATGTGATCTCATTGACCAGTCCTCCAGATGCGTGCAGGCTATCGGTGCTTTCTAGGGTTATCAGATTGGCAGCAGAATCCGACGCCGTTTGGGACAAGTTCCTGCCCCCTGAGACCCATGAGATCCTATCCCACTCTGCCACTGCCTCCGCTGCCAAATCCAAGAAAGAGCTCTACATGTCTCTCAGCCACAGCCCCGTCCTCATCGACGATGGCACTATGAGCTTTTCATTGGACAAATGGAGTGGTAAGAAATGTTATATGATAGCTTCAAAGGGACTTCGGATTGCTTGGGGTGACACTCCTCGATATTGGGAATGGATTTCTCTGCCCGAGTCCAGGTTTGAGGAGGTTGCTAAGCTTCGGGTGGTTGGTTGGTTTGAAATTCGTGGGAGAATTGCTACTCGCATGCTTTCTCCATCCACTCTATATAAAGCTTATCTTGTGTACAAGTTTAATGAACGCCCATGGACGTTTGACAACCATCCCACGGCGGTGGCAGTTTCCGCAAGGTCTTATGGCTTTGATTACGAATGCCCGAGTTTGAGTGAATTGGTTGAAGGAGGAGAGCTCAAGTACACTGCCTTTCTGGCGCAGCCGGAAAGAGAAATTAGTGAAGAGACTCGACTTCCAGACAAAAGGGCGGATGGCTGGTTGGAGATGGAGCTAGGTGAGTATTTCTGTGAAGGTGAGGAAGATGTGGAGTTGGAGATGATTTGTTGTGAGATTAATAGTAGCGGCAAGTGTGGCATCATTGTGCAAGGGATTGAGGTCAGACCCAAAAGCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

286

Amino Acids

32.52

Weight (kDa)

5.54

Isoelectric Point (pI)

53.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 107 - 283 8.4e-46 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 219, 563, 576, 713, 807
AclWI GGATC 1 cut(s) 187
AcsI RAATTY 1 cut(s) 453
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 2 cut(s) 518, 647
AfiI CCNNNNNNNGG 2 cut(s) 408, 559
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 3 cut(s) 342, 452, 629
AjnI CCWGG 1 cut(s) 407
AleI CACNNNNGTG 1 cut(s) 563
AluBI AGCT 7 cut(s) 241, 294, 338, 430, 506, 640, 736
AluI AGCT 7 cut(s) 241, 294, 338, 430, 506, 640, 736
Alw21I GWGCWC 2 cut(s) 243, 642
Alw26I GTCTC 3 cut(s) 176, 255, 683
AlwI GGATC 1 cut(s) 187
Ama87I CYCGRG 2 cut(s) 401, 607
ApeKI GCWGC 4 cut(s) 28, 140, 221, 664
ApoI RAATTY 1 cut(s) 453
AseI ATTAAT 1 cut(s) 798
AspLEI GCGC 1 cut(s) 664
AsuHPI GGTGA 3 cut(s) 377, 752, 770
AvaI CYCGRG 2 cut(s) 401, 607
BanII GRGCYC 2 cut(s) 243, 642
Bbv12I GWGCWC 2 cut(s) 243, 642
BbvI GCAGC 4 cut(s) 40, 152, 208, 676
BccI CCATC 5 cut(s) 275, 496, 561, 710, 724
BceAI ACGGC 2 cut(s) 140, 576
BciT130I CCWGG 1 cut(s) 409
BcoDI GTCTC 3 cut(s) 176, 255, 683
BfaI CTAG 4 cut(s) 35, 123, 737, 859
BglI GCCNNNNNGGC 1 cut(s) 659
BisI GCNGC 5 cut(s) 29, 141, 222, 665, 808
BlpI GCTNAGC 1 cut(s) 426
BlsI GCNGC 5 cut(s) 30, 142, 223, 666, 809
Bme1390I CCNGG 1 cut(s) 409
BmeT110I CYCGRG 2 cut(s) 401, 607
BmrFI CCNGG 1 cut(s) 409
BmsI GCATC 4 cut(s) 40, 50, 88, 828
BplI GAGNNNNNCTC 2 cut(s) 624, 656
BpmI CTGGAG 1 cut(s) 78
Bpu1102I GCTNAGC 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 626
BsaHI GRCGYC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 536, 558
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 2 cut(s) 408, 559
Bse1I ACTGG 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 409
BseDI CCNNGG 2 cut(s) 536, 558
BseGI GGATG 4 cut(s) 65, 488, 553, 721
BseLI CCNNNNNNNGG 2 cut(s) 408, 559
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 2 cut(s) 171, 268
BseNI ACTGG 1 cut(s) 87
BseRI GAGGAG 5 cut(s) 25, 28, 363, 431, 648
BseXI GCAGC 4 cut(s) 40, 152, 208, 676
BsgI GTGCAG 1 cut(s) 124
BsiHKAI GWGCWC 2 cut(s) 243, 642
BsiHKCI CYCGRG 2 cut(s) 401, 607
BsiSI CCGG 2 cut(s) 53, 668
BslFI GGGAC 2 cut(s) 176, 360
BslI CCNNNNNNNGG 2 cut(s) 408, 559
BsmAI GTCTC 3 cut(s) 176, 255, 683
BsmFI GGGAC 2 cut(s) 176, 360
BsmI GAATGC 1 cut(s) 608
Bso31I GGTCTC 1 cut(s) 176
BsoBI CYCGRG 2 cut(s) 401, 607
Bsp1286I GDGCHC 2 cut(s) 243, 642
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 2 cut(s) 75, 192
Bsp1720I GCTNAGC 1 cut(s) 426
Bsp19I CCATGG 1 cut(s) 536
BspACI CCGC 5 cut(s) 219, 563, 576, 713, 807
BspCNI CTCAG 2 cut(s) 172, 267
BspPI GGATC 1 cut(s) 187
BspTNI GGTCTC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 63
BsrGI TGTACA 1 cut(s) 516
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 2 cut(s) 536, 558
BssMI GATC 2 cut(s) 75, 192
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 536
Bst2UI CCWGG 1 cut(s) 409
Bst6I CTCTTC 1 cut(s) 681
BstACI GRCGYC 1 cut(s) 153
BstAPI GCANNNNNTGC 1 cut(s) 49
BstAUI TGTACA 1 cut(s) 516
BstC8I GCNNGC 4 cut(s) 45, 103, 107, 479
BstDEI CTNAG 3 cut(s) 180, 254, 426
BstDSI CCRYGG 2 cut(s) 536, 558
BstF5I GGATG 4 cut(s) 65, 488, 553, 721
BstHHI GCGC 1 cut(s) 664
BstKTI GATC 2 cut(s) 78, 195
BstMAI GTCTC 3 cut(s) 176, 255, 683
BstMBI GATC 2 cut(s) 75, 192
BstMWI GCNNNNNNNGC 7 cut(s) 49, 115, 221, 291, 575, 659, 816
BstNI CCWGG 1 cut(s) 409
BstNSI RCATGY 2 cut(s) 250, 481
BstSCI CCNGG 1 cut(s) 407
BstV1I GCAGC 4 cut(s) 40, 152, 208, 676
BstX2I RGATCY 1 cut(s) 192
BstXI CCANNNNNNTGG 1 cut(s) 565
BstYI RGATCY 1 cut(s) 192
BtgI CCRYGG 2 cut(s) 536, 558
BtsCI GGATG 4 cut(s) 65, 488, 553, 721
BtsI GCAGTG 2 cut(s) 210, 648
BtsIMutI CAGTG 2 cut(s) 210, 648
Cac8I GCNNGC 4 cut(s) 45, 103, 107, 479
CfoI GCGC 1 cut(s) 664
CseI GACGC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 517, 646
CspCI CAANNNNNGTGG 2 cut(s) 295, 330
CviAII CATG 4 cut(s) 188, 247, 478, 537
CviQI GTAC 2 cut(s) 517, 646
DdeI CTNAG 3 cut(s) 180, 254, 426
DpnI GATC 2 cut(s) 77, 194
DpnII GATC 2 cut(s) 75, 192
Eam1104I CTCTTC 1 cut(s) 681
EarI CTCTTC 1 cut(s) 681
EciI GGCGGA 1 cut(s) 728
Ecl136II GAGCTC 2 cut(s) 241, 640
Eco130I CCWWGG 1 cut(s) 536
Eco24I GRGCYC 2 cut(s) 243, 642
Eco31I GGTCTC 1 cut(s) 176
Eco53kI GAGCTC 2 cut(s) 241, 640
Eco88I CYCGRG 2 cut(s) 401, 607
EcoICRI GAGCTC 2 cut(s) 241, 640
EcoRII CCWGG 1 cut(s) 407
EcoT14I CCWWGG 1 cut(s) 536
EcoT22I ATGCAT 1 cut(s) 65
EcoT38I GRGCYC 2 cut(s) 243, 642
ErhI CCWWGG 1 cut(s) 536
FaeI CATG 4 cut(s) 191, 250, 481, 540
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FaqI GGGAC 2 cut(s) 176, 360
FatI CATG 4 cut(s) 187, 246, 477, 536
FauNDI CATATG 1 cut(s) 24
Fnu4HI GCNGC 5 cut(s) 29, 141, 222, 665, 808
FokI GGATG 4 cut(s) 72, 475, 540, 728
FriOI GRGCYC 2 cut(s) 243, 642
Fsp4HI GCNGC 5 cut(s) 29, 141, 222, 665, 808
FspBI CTAG 4 cut(s) 35, 123, 737, 859
GlaI GCGC 1 cut(s) 663
GluI GCNGC 5 cut(s) 29, 141, 222, 665, 808
GsuI CTGGAG 1 cut(s) 78
HapII CCGG 2 cut(s) 53, 668
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 664
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 4 cut(s) 191, 250, 481, 540
Hin6I GCGC 1 cut(s) 662
HinP1I GCGC 1 cut(s) 662
HindIII AAGCTT 2 cut(s) 428, 504
HinfI GANTC 4 cut(s) 19, 146, 404, 691
HpaII CCGG 2 cut(s) 53, 668
HphI GGTGA 3 cut(s) 377, 752, 770
Hpy166II GTNNAC 2 cut(s) 517, 648
Hpy188I TCNGA 4 cut(s) 134, 151, 354, 845
Hpy188III TCNNGA 3 cut(s) 35, 95, 701
Hpy8I GTNNAC 2 cut(s) 517, 648
Hpy99I CGWCG 2 cut(s) 155, 281
HpyAV CCTTC 3 cut(s) 50, 623, 749
HpyCH4IV ACGT 1 cut(s) 542
HpyCH4V TGCA 5 cut(s) 28, 43, 63, 105, 829
HpyF10VI GCNNNNNNNGC 7 cut(s) 49, 115, 221, 291, 575, 659, 816
HpyF3I CTNAG 3 cut(s) 180, 254, 426
HpySE526I ACGT 1 cut(s) 542
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 4 cut(s) 191, 250, 481, 540
HspAI GCGC 1 cut(s) 662
Kzo9I GATC 2 cut(s) 75, 192
LmnI GCTCC 1 cut(s) 733
Lsp1109I GCAGC 4 cut(s) 40, 152, 208, 676
LweI GCATC 4 cut(s) 40, 50, 88, 828
MaeI CTAG 4 cut(s) 35, 123, 737, 859
MaeII ACGT 1 cut(s) 542
MaeIII GTNAC 1 cut(s) 365
MalI GATC 2 cut(s) 77, 194
MboI GATC 2 cut(s) 75, 192
MboII GAAGA 2 cut(s) 698, 776
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 2 cut(s) 243, 642
MluCI AATT 4 cut(s) 453, 465, 620, 678
MlyI GAGTC 2 cut(s) 413, 685
MmeI TCCRAC 3 cut(s) 174, 705, 756
Mph1103I ATGCAT 1 cut(s) 65
MseI TTAA 2 cut(s) 525, 798
MslI CAYNNNNRTG 2 cut(s) 563, 824
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 2 cut(s) 53, 668
MspR9I CCNGG 1 cut(s) 409
Mva1269I GAATGC 1 cut(s) 608
MvaI CCWGG 1 cut(s) 409
MwoI GCNNNNNNNGC 7 cut(s) 49, 115, 221, 291, 575, 659, 816
NcoI CCATGG 1 cut(s) 536
NdeI CATATG 1 cut(s) 24
NdeII GATC 2 cut(s) 75, 192
NlaIII CATG 4 cut(s) 191, 250, 481, 540
NmuCI GTSAC 1 cut(s) 365
NsiI ATGCAT 1 cut(s) 65
NspI RCATGY 2 cut(s) 250, 481
OliI CACNNNNGTG 1 cut(s) 563
PaeI GCATGC 1 cut(s) 481
PciI ACATGT 1 cut(s) 246
PctI GAATGC 1 cut(s) 608
PfeI GAWTC 2 cut(s) 19, 146
PkrI GCNGC 5 cut(s) 30, 142, 223, 666, 809
PleI GAGTC 2 cut(s) 412, 685
PpsI GAGTC 2 cut(s) 412, 685
PscI ACATGT 1 cut(s) 246
PshBI ATTAAT 1 cut(s) 798
Psp124BI GAGCTC 2 cut(s) 243, 642
Psp6I CCWGG 1 cut(s) 407
PspGI CCWGG 1 cut(s) 407
PsuI RGATCY 1 cut(s) 192
RsaI GTAC 2 cut(s) 518, 647
RsaNI GTAC 2 cut(s) 517, 646
RseI CAYNNNNRTG 2 cut(s) 563, 824
SacI GAGCTC 2 cut(s) 243, 642
SaqAI TTAA 2 cut(s) 525, 798
SatI GCNGC 5 cut(s) 29, 141, 222, 665, 808
Sau3AI GATC 2 cut(s) 75, 192
SchI GAGTC 2 cut(s) 413, 685
ScrFI CCNGG 1 cut(s) 409
SduI GDGCHC 2 cut(s) 243, 642
SfaNI GCATC 4 cut(s) 40, 50, 88, 828
SmiMI CAYNNNNRTG 2 cut(s) 563, 824
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
SphI GCATGC 1 cut(s) 481
Sse9I AATT 4 cut(s) 453, 465, 620, 678
SsiI CCGC 5 cut(s) 219, 563, 576, 713, 807
SspMI CTAG 4 cut(s) 35, 123, 737, 859
SstI GAGCTC 2 cut(s) 243, 642
StyD4I CCNGG 1 cut(s) 407
StyI CCWWGG 1 cut(s) 536
TaiI ACGT 1 cut(s) 545
TaqI TCGA 3 cut(s) 276, 376, 694
TasI AATT 4 cut(s) 453, 465, 620, 678
TatI WGTACW 2 cut(s) 516, 645
TauI GCSGC 1 cut(s) 810
TfiI GAWTC 2 cut(s) 19, 146
Tru1I TTAA 2 cut(s) 525, 798
Tru9I TTAA 2 cut(s) 525, 798
TscAI CASTG 2 cut(s) 217, 655
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 4 cut(s) 28, 140, 221, 664
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 3 cut(s) 17, 288, 543
TspRI CASTG 2 cut(s) 217, 655
VspI ATTAAT 1 cut(s) 798
XapI RAATTY 1 cut(s) 453
XbaI TCTAGA 1 cut(s) 34
XceI RCATGY 2 cut(s) 250, 481
XspI CTAG 4 cut(s) 35, 123, 737, 859
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.