Rmu_sc0016252.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016252.1
OG0000189
Physical Location & Seq
Forward (+)
1 .. 1468
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016252.1_g000001.1.cds

Sequence Viewer

Length: 778 bp
tccagatgcgtgcaggctatcggtgctttctagggttatcagattggcagcagaatccgacgccgtttgggacaagttccttccgcctgagacccatgagatcctatcccactccgccactgcctccgctgccaaatccaagaaggagctctacatgtctctcagccacagccccgtcctcattgacgatggcactatgagcttttctctggaaaaatggactggaaagaaatgttacatgatagctgcaaagcgccttcggattgcttggggtgatactcctctctattggcaatggattactctgcctaacaccaggttcgaggaagtggctgagcttcagtgggttggttggtttgaaattcgtgggagaattgctacacttacgctttccccatcaactctatataaagcttatcttgtgtacaagttcaatgcacactcttatggatttgattactctcctgtggtggtggcggtttctacaagggcttatggctttgattatgaatgccctagtttgagagaaattgttgatggaggagaccttaagcacactgcctttctgacgcatcctgaaagagaaatggatgaagctgatgatctgctgtttccaaaggaaacggccgatggctggttggagatgaagttgggtgaatttttctgtgaaggaggaaaagatgaagagttggagatgatttgttgcgagattgatattagcagcaagagtggcatcattgtgcaagggattgagatcagaccatccgataggaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

258

Amino Acids

29.3

Weight (kDa)

5.02

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 84, 115, 127, 477
AclWI GGATC 1 cut(s) 95
AcoI YGGCCR 1 cut(s) 625
AcsI RAATTY 2 cut(s) 361, 657
AcuI CTGAAG 1 cut(s) 324
AcyI GRCGYC 1 cut(s) 61
AfaI GTAC 1 cut(s) 426
AfiI CCNNNNNNNGG 1 cut(s) 634
AflII CTTAAG 1 cut(s) 549
AflIII ACRYGT 1 cut(s) 154
AgsI TTSAA 2 cut(s) 360, 434
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 6 cut(s) 149, 202, 246, 338, 414, 597
AluI AGCT 6 cut(s) 149, 202, 246, 338, 414, 597
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 3 cut(s) 84, 163, 538
AlwI GGATC 1 cut(s) 95
AoxI GGCC 1 cut(s) 625
ApeKI GCWGC 4 cut(s) 48, 129, 246, 721
ApoI RAATTY 2 cut(s) 361, 657
AspLEI GCGC 1 cut(s) 256
AsuHPI GGTGA 2 cut(s) 285, 666
BanII GRGCYC 1 cut(s) 151
BarI GAAGNNNNNNTAC 2 cut(s) 135, 167
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 4 cut(s) 60, 116, 233, 733
BccI CCATC 5 cut(s) 183, 404, 531, 624, 770
BceAI ACGGC 2 cut(s) 48, 640
BciT130I CCWGG 1 cut(s) 317
BcoDI GTCTC 3 cut(s) 84, 163, 538
BfaI CTAG 3 cut(s) 31, 517, 776
BfoI RGCGCY 1 cut(s) 257
BfrI CTTAAG 1 cut(s) 549
BisI GCNGC 4 cut(s) 49, 130, 247, 722
BlpI GCTNAGC 1 cut(s) 334
BlsI GCNGC 4 cut(s) 50, 131, 248, 723
Bme1390I CCNGG 1 cut(s) 317
BmrFI CCNGG 1 cut(s) 317
BmsI GCATC 2 cut(s) 581, 742
BplI GAGNNNNNCTC 2 cut(s) 191, 223
Bpu1102I GCTNAGC 1 cut(s) 334
BsaBI GATNNNNATC 1 cut(s) 753
BsaHI GRCGYC 1 cut(s) 61
BsaI GGTCTC 2 cut(s) 84, 538
BsaXI ACNNNNNCTCC 2 cut(s) 633, 663
Bsc4I CCNNNNNNNGG 1 cut(s) 634
Bse1I ACTGG 1 cut(s) 227
Bse3DI GCAATG 1 cut(s) 300
Bse8I GATNNNNATC 1 cut(s) 753
BseBI CCWGG 1 cut(s) 317
BseGI GGATG 3 cut(s) 572, 596, 762
BseJI GATNNNNATC 1 cut(s) 753
BseLI CCNNNNNNNGG 1 cut(s) 634
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 3 cut(s) 79, 176, 325
BseNI ACTGG 1 cut(s) 227
BseRI GAGGAG 2 cut(s) 271, 556
BseX3I CGGCCG 1 cut(s) 625
BseXI GCAGC 4 cut(s) 60, 116, 233, 733
BsgI GTGCAG 1 cut(s) 32
Bsh1285I CGRYCG 1 cut(s) 628
BshFI GGCC 1 cut(s) 627
BsiEI CGRYCG 1 cut(s) 628
BsiHKAI GWGCWC 1 cut(s) 151
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 634
BsmAI GTCTC 3 cut(s) 84, 163, 538
BsmFI GGGAC 1 cut(s) 84
BsmI GAATGC 1 cut(s) 516
BsnI GGCC 1 cut(s) 627
Bso31I GGTCTC 2 cut(s) 84, 538
Bsp1286I GDGCHC 1 cut(s) 151
Bsp1407I TGTACA 1 cut(s) 424
Bsp143I GATC 3 cut(s) 100, 602, 754
Bsp1720I GCTNAGC 1 cut(s) 334
BspACI CCGC 4 cut(s) 84, 115, 127, 477
BspANI GGCC 1 cut(s) 627
BspCNI CTCAG 3 cut(s) 80, 175, 326
BspPI GGATC 1 cut(s) 95
BspTI CTTAAG 1 cut(s) 549
BspTNI GGTCTC 2 cut(s) 84, 538
BsrDI GCAATG 1 cut(s) 300
BsrGI TGTACA 1 cut(s) 424
BsrI ACTGG 1 cut(s) 227
BssMI GATC 3 cut(s) 100, 602, 754
BssNI GRCGYC 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 317
Bst6I CTCTTC 1 cut(s) 679
BstACI GRCGYC 1 cut(s) 61
BstAFI CTTAAG 1 cut(s) 549
BstAUI TGTACA 1 cut(s) 424
BstC8I GCNNGC 2 cut(s) 11, 15
BstDEI CTNAG 3 cut(s) 88, 162, 334
BstF5I GGATG 3 cut(s) 572, 596, 762
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 3 cut(s) 103, 605, 757
BstMAI GTCTC 3 cut(s) 84, 163, 538
BstMBI GATC 3 cut(s) 100, 602, 754
BstMCI CGRYCG 1 cut(s) 628
BstMWI GCNNNNNNNGC 4 cut(s) 23, 129, 199, 730
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 315
BstV1I GCAGC 4 cut(s) 60, 116, 233, 733
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BstZI CGGCCG 1 cut(s) 625
BsuRI GGCC 1 cut(s) 627
BtsCI GGATG 3 cut(s) 572, 596, 762
BtsI GCAGTG 2 cut(s) 118, 556
BtsIMutI CAGTG 3 cut(s) 118, 348, 556
Cac8I GCNNGC 2 cut(s) 11, 15
CfoI GCGC 1 cut(s) 256
CseI GACGC 2 cut(s) 69, 578
CsiI ACCWGGT 1 cut(s) 315
Csp6I GTAC 1 cut(s) 425
CviAII CATG 3 cut(s) 96, 155, 239
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 3 cut(s) 88, 162, 334
DpnI GATC 3 cut(s) 102, 604, 756
DpnII GATC 3 cut(s) 100, 602, 754
EaeI YGGCCR 1 cut(s) 625
EagI CGGCCG 1 cut(s) 625
Eam1104I CTCTTC 1 cut(s) 679
EarI CTCTTC 1 cut(s) 679
EciI GGCGGA 2 cut(s) 73, 104
Ecl136II GAGCTC 1 cut(s) 149
EclXI CGGCCG 1 cut(s) 625
Eco24I GRGCYC 1 cut(s) 151
Eco31I GGTCTC 2 cut(s) 84, 538
Eco52I CGGCCG 1 cut(s) 625
Eco53kI GAGCTC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 151
FaeI CATG 3 cut(s) 99, 158, 242
FaiI YATR 9 cut(s) 97, 156, 198, 240, 407, 409, 448, 496, 508
FalI AAGNNNNNCTT 2 cut(s) 403, 435
FaqI GGGAC 1 cut(s) 84
FatI CATG 3 cut(s) 95, 154, 238
Fnu4HI GCNGC 4 cut(s) 49, 130, 247, 722
FokI GGATG 3 cut(s) 559, 603, 749
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 4 cut(s) 49, 130, 247, 722
FspBI CTAG 3 cut(s) 31, 517, 776
GlaI GCGC 1 cut(s) 255
GluI GCNGC 4 cut(s) 49, 130, 247, 722
HaeII RGCGCY 1 cut(s) 257
HaeIII GGCC 1 cut(s) 627
HgaI GACGC 2 cut(s) 69, 578
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 61
Hin1II CATG 3 cut(s) 99, 158, 242
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HindIII AAGCTT 1 cut(s) 412
HinfI GANTC 1 cut(s) 54
HphI GGTGA 2 cut(s) 285, 666
Hpy166II GTNNAC 1 cut(s) 425
Hpy188I TCNGA 6 cut(s) 42, 59, 262, 568, 759, 767
Hpy188III TCNNGA 3 cut(s) 3, 210, 576
Hpy8I GTNNAC 1 cut(s) 425
Hpy99I CGWCG 1 cut(s) 63
HpyAV CCTTC 4 cut(s) 90, 137, 267, 663
HpyCH4V TGCA 4 cut(s) 13, 249, 438, 743
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 129, 199, 730
HpyF3I CTNAG 3 cut(s) 88, 162, 334
Hsp92I GRCGYC 1 cut(s) 61
Hsp92II CATG 3 cut(s) 99, 158, 242
HspAI GCGC 1 cut(s) 254
Kzo9I GATC 3 cut(s) 100, 602, 754
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 9 cut(s) 16, 100, 195, 208, 302, 329, 478, 589, 620
Lsp1109I GCAGC 4 cut(s) 60, 116, 233, 733
LweI GCATC 2 cut(s) 581, 742
MabI ACCWGGT 1 cut(s) 315
MaeI CTAG 3 cut(s) 31, 517, 776
MaeIII GTNAC 1 cut(s) 234
MalI GATC 3 cut(s) 102, 604, 756
MboI GATC 3 cut(s) 100, 602, 754
MboII GAAGA 1 cut(s) 696
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 4 cut(s) 361, 373, 529, 657
MmeI TCCRAC 3 cut(s) 82, 619, 670
MnlI CCTC 6 cut(s) 134, 189, 292, 317, 534, 666
MseI TTAA 1 cut(s) 550
MslI CAYNNNNRTG 2 cut(s) 445, 738
MspA1I CMGCKG 1 cut(s) 129
MspCI CTTAAG 1 cut(s) 549
MspR9I CCNGG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 516
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 4 cut(s) 23, 129, 199, 730
NdeII GATC 3 cut(s) 100, 602, 754
NlaIII CATG 3 cut(s) 99, 158, 242
NspI RCATGY 1 cut(s) 158
PciI ACATGT 1 cut(s) 154
PctI GAATGC 1 cut(s) 516
PfeI GAWTC 1 cut(s) 54
PkrI GCNGC 4 cut(s) 50, 131, 248, 723
PscI ACATGT 1 cut(s) 154
Psp124BI GAGCTC 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
RseI CAYNNNNRTG 2 cut(s) 445, 738
SacI GAGCTC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 550
SatI GCNGC 4 cut(s) 49, 130, 247, 722
Sau3AI GATC 3 cut(s) 100, 602, 754
ScrFI CCNGG 1 cut(s) 317
SduI GDGCHC 1 cut(s) 151
SetI ASST 8 cut(s) 151, 204, 248, 321, 340, 416, 550, 599
SexAI ACCWGGT 1 cut(s) 315
SfaNI GCATC 2 cut(s) 581, 742
SmiMI CAYNNNNRTG 2 cut(s) 445, 738
SmlI CTYRAG 1 cut(s) 549
SmoI CTYRAG 1 cut(s) 549
Sse9I AATT 4 cut(s) 361, 373, 529, 657
SsiI CCGC 4 cut(s) 84, 115, 127, 477
SspMI CTAG 3 cut(s) 31, 517, 776
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 315
TaqI TCGA 1 cut(s) 322
TasI AATT 4 cut(s) 361, 373, 529, 657
TatI WGTACW 1 cut(s) 424
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 1 cut(s) 550
Tru9I TTAA 1 cut(s) 550
TscAI CASTG 3 cut(s) 125, 348, 563
TseI GCWGC 4 cut(s) 48, 129, 246, 721
TspDTI ATGAA 4 cut(s) 523, 607, 660, 697
TspRI CASTG 3 cut(s) 125, 348, 563
Vha464I CTTAAG 1 cut(s) 549
XapI RAATTY 2 cut(s) 361, 657
XceI RCATGY 1 cut(s) 158
XspI CTAG 3 cut(s) 31, 517, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.