Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000189

Physical Location & Seq

Genomic Coordinates Reverse (-)

610428 .. 611843

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGACCAAAACAAGGTGCATGCATGTGCATTTTCGTAAAATTCTACAACGAGTTAAGAAGACTCTTAGACTCTCAGCTTCCGACCAACAAAGCCAAGGCGTTACTGAGCCGTTGTCTTTGGGTGATTTACCGGAAGAATGTATCTCCCTCATAATCTCTTTCACAAGTCCTCGAGACGCATGTGTTTTCGCTTTGGTTTCAAAAACCTTTGAATCTGCTGTCCAATCCGATATAGTGTGGGAGAAGTTTATTCCACCAGAGTATGAATCTTTGTTATCTCGATCGCAACATTTTTCATCGAAGAAGGAGCTCTTTTTCGCTCTTTGCGACGAATCTGTTTTAATCAACGTTAGCAAAAAGGACTTGTGGATAGAAAAGGCGACTGGGAAGAGGTGTATGATGTTATCAGCTTCAGCTTTGAACCTTTCCACTCATCACACTTGGAAATGGATTACAAACCCTGTATCAGCTTGGTTGGAAACAGTACCAGAGCTTCTCACAACACGTTGGTTCGAGATTCGATGCAGAACGAATACTCGTTTTCTATCACCAAGAACTCGTTACTCGGTTTACATTGTGTTCTTGAAAGCGGATATATGTTATGGCTTTGCGTATGTGGCCATGGAAGCTGTAGTTAGAATGGTGGGACATGAATTAAGTGAATCTTGTAGAAGATATGTATGCTTTCATGAGGCTATGGAGTGGCAGTTTCTTACAAGGAAGAACCTAGTGAATCCCGAGAGGAGAGAAGATGGGTGGATGGAGATAGAGATTGGGGAATTCTTTAATGAAGGAGCATTTAGGAATAATGATGAAATTGAGATGAGTGTTTCAGAGACTACTCAGCGCAATACGAAACGTGGCTTGATTATTCAAGGAATTGAAATCCGTCCTACGAAAAAACCCGGTAATGAAATGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

307

Amino Acids

35.68

Weight (kDa)

8.33

Isoelectric Point (pI)

55.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	41 - 82	1.8e-06	F-box-like
F-box	PF00646	42 - 82	2e-08	F-box domain
PP2	PF14299	130 - 298	1.4e-43	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca	FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica	MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica	Prupe.6G356300_v2.0.a1
pyrus_communis	pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis	RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata	RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora	Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa	Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha	Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana	Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	590
AclI	AACGTT	1 cut(s)	348
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	2 cut(s)	39, 779
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	486
AfiI	CCNNNNNNNGG	1 cut(s)	12
AflIII	ACRYGT	1 cut(s)	503
AgsI	TTSAA	6 cut(s)	201, 212, 421, 586, 875, 884
AluBI	AGCT	7 cut(s)	77, 310, 410, 416, 470, 493, 629
AluI	AGCT	7 cut(s)	77, 310, 410, 416, 470, 493, 629
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	2 cut(s)	168, 830
Ama87I	CYCGRG	2 cut(s)	171, 737
AoxI	GGCC	1 cut(s)	618
ApoI	RAATTY	2 cut(s)	39, 779
AspLEI	GCGC	1 cut(s)	849
AsuC2I	CCSGG	1 cut(s)	906
AsuHPI	GGTGA	2 cut(s)	134, 540
AvaI	CYCGRG	2 cut(s)	171, 737
BalI	TGGCCA	1 cut(s)	620
BanII	GRGCYC	1 cut(s)	312
BarI	GAAGNNNNNNTAC	2 cut(s)	477, 509
BbsI	GAAGAC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	312
BccI	CCATC	2 cut(s)	746, 754
BceAI	ACGGC	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	906
BcoDI	GTCTC	2 cut(s)	168, 830
BfaI	CTAG	2 cut(s)	728, 922
BfmI	CTRYAG	1 cut(s)	630
Bme1390I	CCNGG	1 cut(s)	906
BmeT110I	CYCGRG	2 cut(s)	171, 737
BmrFI	CCNGG	1 cut(s)	906
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	1 cut(s)	512
BmuI	ACTGGG	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	906
BsaJI	CCNNGG	2 cut(s)	94, 621
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	692, 722
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse1I	ACTGG	1 cut(s)	388
BseDI	CCNNGG	2 cut(s)	94, 621
BseGI	GGATG	1 cut(s)	765
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMII	CTCAG	3 cut(s)	87, 96, 857
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	757
Bsh1285I	CGRYCG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	620
BsiEI	CGRYCG	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	312
BsiHKCI	CYCGRG	2 cut(s)	171, 737
BsiSI	CCGG	2 cut(s)	131, 906
BslFI	GGGAC	1 cut(s)	660
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	2 cut(s)	168, 830
BsmBI	CGTCTC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	660
BsnI	GGCC	1 cut(s)	620
BsoBI	CYCGRG	2 cut(s)	171, 737
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	281
Bsp19I	CCATGG	1 cut(s)	621
BspACI	CCGC	1 cut(s)	590
BspANI	GGCC	1 cut(s)	620
BspCNI	CTCAG	3 cut(s)	86, 97, 856
BspHI	TCATGA	1 cut(s)	688
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	2 cut(s)	94, 621
BssMI	GATC	1 cut(s)	281
BssT1I	CCWWGG	2 cut(s)	94, 621
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	4 cut(s)	65, 73, 105, 843
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	1 cut(s)	765
BstHHI	GCGC	1 cut(s)	849
BstKTI	GATC	1 cut(s)	284
BstMAI	GTCTC	2 cut(s)	168, 830
BstMBI	GATC	1 cut(s)	281
BstMCI	CGRYCG	1 cut(s)	284
BstMWI	GCNNNNNNNGC	2 cut(s)	617, 626
BstNSI	RCATGY	3 cut(s)	22, 26, 183
BstSCI	CCNGG	1 cut(s)	904
BstSFI	CTRYAG	1 cut(s)	630
BstV2I	GAAGAC	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	620
BtgI	CCRYGG	1 cut(s)	621
BtsCI	GGATG	1 cut(s)	765
Cac8I	GCNNGC	1 cut(s)	20
CciI	TCATGA	1 cut(s)	688
CfoI	GCGC	1 cut(s)	849
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	485
CviAII	CATG	6 cut(s)	19, 23, 180, 622, 650, 689
CviQI	GTAC	1 cut(s)	485
DdeI	CTNAG	4 cut(s)	65, 73, 105, 843
DpnI	GATC	1 cut(s)	283
DpnII	GATC	1 cut(s)	281
EaeI	YGGCCR	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	2 cut(s)	94, 621
Eco24I	GRGCYC	1 cut(s)	312
Eco53kI	GAGCTC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	396
Eco88I	CYCGRG	2 cut(s)	171, 737
EcoICRI	GAGCTC	1 cut(s)	310
EcoRI	GAATTC	1 cut(s)	779
EcoT14I	CCWWGG	2 cut(s)	94, 621
EcoT22I	ATGCAT	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	2 cut(s)	94, 621
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	6 cut(s)	22, 26, 183, 625, 653, 692
FalI	AAGNNNNNCTT	4 cut(s)	296, 328, 649, 681
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	6 cut(s)	18, 22, 179, 621, 649, 688
FokI	GGATG	1 cut(s)	772
FriOI	GRGCYC	1 cut(s)	312
FspBI	CTAG	2 cut(s)	728, 922
GlaI	GCGC	1 cut(s)	848
HaeIII	GGCC	1 cut(s)	620
HapII	CCGG	2 cut(s)	131, 906
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	849
Hin1II	CATG	6 cut(s)	22, 26, 183, 625, 653, 692
Hin6I	GCGC	1 cut(s)	847
HinP1I	GCGC	1 cut(s)	847
HinfI	GANTC	8 cut(s)	61, 69, 212, 266, 332, 517, 662, 733
HpaII	CCGG	2 cut(s)	131, 906
HphI	GGTGA	2 cut(s)	134, 540
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	3 cut(s)	82, 229, 835
Hpy188III	TCNNGA	6 cut(s)	173, 279, 514, 583, 689, 737
Hpy8I	GTNNAC	1 cut(s)	571
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	2 cut(s)	298, 785
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4IV	ACGT	3 cut(s)	348, 505, 859
HpyCH4V	TGCA	4 cut(s)	18, 22, 28, 525
HpyF10VI	GCNNNNNNNGC	2 cut(s)	617, 626
HpyF3I	CTNAG	4 cut(s)	65, 73, 105, 843
HpySE526I	ACGT	3 cut(s)	348, 505, 859
Hsp92II	CATG	6 cut(s)	22, 26, 183, 625, 653, 692
HspAI	GCGC	1 cut(s)	847
Kzo9I	GATC	1 cut(s)	281
LmnI	GCTCC	2 cut(s)	307, 794
LpnPI	CCDG	6 cut(s)	144, 270, 369, 474, 501, 919
LweI	GCATC	1 cut(s)	512
MaeI	CTAG	2 cut(s)	728, 922
MaeII	ACGT	3 cut(s)	348, 505, 859
MaeIII	GTNAC	2 cut(s)	100, 560
MalI	GATC	1 cut(s)	283
MboI	GATC	1 cut(s)	281
MboII	GAAGA	7 cut(s)	70, 146, 313, 400, 684, 733, 761
MhlI	GDGCHC	1 cut(s)	312
MlsI	TGGCCA	1 cut(s)	620
MluCI	AATT	5 cut(s)	39, 653, 779, 816, 879
MluNI	TGGCCA	1 cut(s)	620
MlyI	GAGTC	2 cut(s)	55, 63
MmeI	TCCRAC	2 cut(s)	105, 456
MnlI	CCTC	5 cut(s)	158, 180, 384, 685, 735
Mox20I	TGGCCA	1 cut(s)	620
Mph1103I	ATGCAT	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	620
MseI	TTAA	4 cut(s)	54, 341, 656, 786
MslI	CAYNNNNRTG	1 cut(s)	23
Msp20I	TGGCCA	1 cut(s)	620
MspI	CCGG	2 cut(s)	131, 906
MspR9I	CCNGG	1 cut(s)	906
MwoI	GCNNNNNNNGC	2 cut(s)	617, 626
NciI	CCSGG	1 cut(s)	906
NcoI	CCATGG	1 cut(s)	621
NdeII	GATC	1 cut(s)	281
NlaIII	CATG	6 cut(s)	22, 26, 183, 625, 653, 692
NsiI	ATGCAT	1 cut(s)	24
NspI	RCATGY	3 cut(s)	22, 26, 183
PaeI	GCATGC	1 cut(s)	22
PaeR7I	CTCGAG	1 cut(s)	171
PagI	TCATGA	1 cut(s)	688
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PfeI	GAWTC	6 cut(s)	212, 266, 332, 517, 662, 733
Ple19I	CGATCG	1 cut(s)	284
PleI	GAGTC	2 cut(s)	55, 63
PpsI	GAGTC	2 cut(s)	55, 63
Psp124BI	GAGCTC	1 cut(s)	312
Psp1406I	AACGTT	1 cut(s)	348
PvuI	CGATCG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
RseI	CAYNNNNRTG	1 cut(s)	23
SacI	GAGCTC	1 cut(s)	312
SaqAI	TTAA	4 cut(s)	54, 341, 656, 786
Sau3AI	GATC	1 cut(s)	281
SchI	GAGTC	2 cut(s)	55, 63
ScrFI	CCNGG	1 cut(s)	906
SduI	GDGCHC	1 cut(s)	312
SfaNI	GCATC	1 cut(s)	512
SfcI	CTRYAG	1 cut(s)	630
Sfr274I	CTCGAG	1 cut(s)	171
SlaI	CTCGAG	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
SphI	GCATGC	1 cut(s)	22
Sse9I	AATT	5 cut(s)	39, 653, 779, 816, 879
SsiI	CCGC	1 cut(s)	590
SspMI	CTAG	2 cut(s)	728, 922
SstI	GAGCTC	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	904
StyI	CCWWGG	2 cut(s)	94, 621
TaaI	ACNGT	1 cut(s)	484
TaiI	ACGT	3 cut(s)	351, 508, 862
TaqI	TCGA	5 cut(s)	172, 280, 299, 513, 520
TasI	AATT	5 cut(s)	39, 653, 779, 816, 879
TfiI	GAWTC	6 cut(s)	212, 266, 332, 517, 662, 733
Tru1I	TTAA	4 cut(s)	54, 341, 656, 786
Tru9I	TTAA	4 cut(s)	54, 341, 656, 786
TspDTI	ATGAA	6 cut(s)	279, 285, 666, 677, 804, 828
TspGWI	ACGGA	1 cut(s)	878
XapI	RAATTY	2 cut(s)	39, 779
XceI	RCATGY	3 cut(s)	22, 26, 183
XhoI	CTCGAG	1 cut(s)	171
XspI	CTAG	2 cut(s)	728, 922
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.