Rmu_sc0002741.1_g000008

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002741.1
OG0000189
Physical Location & Seq
Reverse (-)
34182 .. 34873
692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002741.1_g000008.1.cds

Sequence Viewer

Length: 570 bp
atgatatctgcaaggagccttcagattatttggtctgatactcctcaatattggagatggatttctctccctgacaccaggtttgaggaggtggctgagcttcttggtgtttggtggcttgaaatcagtggaaaaattgatagacgcatgatgtctccgtcgactctgtataaagcttatcttgtctacaggttaactgcaatgtcttacggatttgagtgccaatctgtggaggtcacagttggaggagaagctaataagcggattgtgtttctggaagatgcggggcggataaagaagagatcggtatactggactcactttttgggtttgcatgccgcactggtacaggcacagtcatcgtcccagcccagagaaatcgaattagctcgtcaatatccaaaggaaagagctgacggctggttggagatcgaactgggtgaatttttctgtgaaggaggtgaagaagaagatggggaattggagatgacttgttccgagatcaatggtgctttcgccaagggtggcctcattgttcaagggattgaggtcagacccaacaggatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

189

Amino Acids

21.66

Weight (kDa)

5.03

Isoelectric Point (pI)

57.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 229
AccI GTMKAC 3 cut(s) 161, 186, 309
AciI CCGC 4 cut(s) 262, 284, 289, 339
AcsI RAATTY 1 cut(s) 443
AcuI CTGAAG 1 cut(s) 5
AfaI GTAC 1 cut(s) 348
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 2 cut(s) 122, 539
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 5 cut(s) 100, 176, 254, 389, 413
AluI AGCT 5 cut(s) 100, 176, 254, 389, 413
Alw26I GTCTC 1 cut(s) 159
AoxI GGCC 1 cut(s) 526
ApoI RAATTY 1 cut(s) 443
ArsI GACNNNNNNTTYG 4 cut(s) 65, 97, 307, 339
AsuHPI GGTGA 2 cut(s) 452, 473
BccI CCATC 2 cut(s) 51, 467
BceAI ACGGC 1 cut(s) 433
BcgI CGANNNNNNTGC 2 cut(s) 342, 376
BciT130I CCWGG 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 187
BisI GCNGC 1 cut(s) 339
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 79
BmrI ACTGGG 1 cut(s) 446
BmsI GCATC 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 446
Bpu1102I GCTNAGC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 519
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 3 cut(s) 317, 348, 441
Bse3DI GCAATG 1 cut(s) 207
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 519
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 3 cut(s) 317, 348, 441
BseRI GAGGAG 3 cut(s) 33, 101, 261
BseYI CCCAGC 1 cut(s) 366
BshFI GGCC 1 cut(s) 528
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 349
BsnI GGCC 1 cut(s) 528
Bsp143I GATC 3 cut(s) 302, 429, 501
Bsp1720I GCTNAGC 1 cut(s) 96
BspACI CCGC 4 cut(s) 262, 284, 289, 339
BspANI GGCC 1 cut(s) 528
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 207
BsrI ACTGG 3 cut(s) 317, 348, 441
BssECI CCNNGG 1 cut(s) 519
BssMI GATC 3 cut(s) 302, 429, 501
BssNAI GTATAC 1 cut(s) 310
BssT1I CCWWGG 1 cut(s) 519
Bst1107I GTATAC 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 2 cut(s) 241, 357
Bst6I CTCTTC 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 96
BstKTI GATC 3 cut(s) 305, 432, 504
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 3 cut(s) 302, 429, 501
BstNI CCWGG 1 cut(s) 79
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 77
BstSFI CTRYAG 1 cut(s) 187
BstZ17I GTATAC 1 cut(s) 310
BsuRI GGCC 1 cut(s) 528
BtsIMutI CAGTG 2 cut(s) 133, 341
Cac8I GCNNGC 1 cut(s) 336
CseI GACGC 1 cut(s) 153
CsiI ACCWGGT 1 cut(s) 77
Csp6I GTAC 1 cut(s) 347
CviAII CATG 2 cut(s) 148, 335
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 1 cut(s) 96
DpnI GATC 3 cut(s) 304, 431, 503
DpnII GATC 3 cut(s) 302, 429, 501
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
EciI GGCGGA 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 519
Eco32I GATATC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 77
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 2 cut(s) 151, 338
FaiI YATR 5 cut(s) 149, 171, 310, 336, 568
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FaqI GGGAC 1 cut(s) 349
FatI CATG 2 cut(s) 147, 334
FauI CCCGC 1 cut(s) 277
FblI GTMKAC 3 cut(s) 161, 186, 309
Fnu4HI GCNGC 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 339
GluI GCNGC 1 cut(s) 339
GsaI CCCAGC 1 cut(s) 370
HaeIII GGCC 1 cut(s) 528
HgaI GACGC 1 cut(s) 153
Hin1II CATG 2 cut(s) 151, 338
HincII GTYRAC 2 cut(s) 162, 195
HindII GTYRAC 2 cut(s) 162, 195
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 2 cut(s) 163, 316
HpaI GTTAAC 1 cut(s) 195
HphI GGTGA 2 cut(s) 452, 473
Hpy166II GTNNAC 4 cut(s) 162, 187, 195, 310
Hpy188I TCNGA 4 cut(s) 24, 37, 499, 554
Hpy188III TCNNGA 1 cut(s) 275
Hpy8I GTNNAC 4 cut(s) 162, 187, 195, 310
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 29, 449
HpyCH4III ACNGT 2 cut(s) 241, 357
HpyCH4V TGCA 3 cut(s) 11, 200, 334
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 2 cut(s) 151, 338
KspAI GTTAAC 1 cut(s) 195
Kzo9I GATC 3 cut(s) 302, 429, 501
LmnI GCTCC 1 cut(s) 15
LweI GCATC 1 cut(s) 271
MabI ACCWGGT 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 235
MalI GATC 3 cut(s) 304, 431, 503
MboI GATC 3 cut(s) 302, 429, 501
MboII GAAGA 5 cut(s) 290, 310, 476, 479, 482
MluCI AATT 4 cut(s) 135, 383, 443, 479
MlyI GAGTC 2 cut(s) 157, 310
MmeI TCCRAC 2 cut(s) 223, 405
MnlI CCTC 8 cut(s) 54, 79, 82, 226, 239, 452, 539, 541
MseI TTAA 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 79
MvaI CCWGG 1 cut(s) 79
NdeII GATC 3 cut(s) 302, 429, 501
NlaIII CATG 2 cut(s) 151, 338
NlaIV GGNNCC 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 235
NspI RCATGY 1 cut(s) 338
PaeI GCATGC 1 cut(s) 338
PflMI CCANNNNNTGG 1 cut(s) 229
PkrI GCNGC 1 cut(s) 340
PleI GAGTC 2 cut(s) 157, 310
PpsI GAGTC 2 cut(s) 157, 310
Psp6I CCWGG 1 cut(s) 77
PspFI CCCAGC 1 cut(s) 366
PspGI CCWGG 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 17
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
SalI GTCGAC 1 cut(s) 160
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 3 cut(s) 302, 429, 501
SchI GAGTC 2 cut(s) 157, 310
ScrFI CCNGG 1 cut(s) 79
SexAI ACCWGGT 1 cut(s) 77
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 187
SphI GCATGC 1 cut(s) 338
Sse9I AATT 4 cut(s) 135, 383, 443, 479
SsiI CCGC 4 cut(s) 262, 284, 289, 339
SspI AATATT 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 77
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 2 cut(s) 241, 357
TaqI TCGA 3 cut(s) 161, 381, 432
TasI AATT 4 cut(s) 135, 383, 443, 479
TauI GCSGC 1 cut(s) 341
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 2 cut(s) 133, 348
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspGWI ACGGA 2 cut(s) 147, 225
TspRI CASTG 2 cut(s) 133, 348
Van91I CCANNNNNTGG 1 cut(s) 229
XapI RAATTY 1 cut(s) 443
XceI RCATGY 1 cut(s) 338
XmiI GTMKAC 3 cut(s) 161, 186, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.