Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000189

Physical Location & Seq

Genomic Coordinates Reverse (-)

606182 .. 607919

Gene Structure 1738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGGCCAAAAACATGGCGTTGACACAAGAGGGAAAGGCGCAGAATTTTGTGGTTGTTGGGAGATTCTCACTGAATTTATCAATGGTTCTTCGGCATCTTTCGATGACTTGCCAGACGATTGCTTAGCTATCATAAGCTCTTTTACAAGTACTCCACGGGACGCGTTCCTTGCTGCTTTGGTTTCGAAAAGCTTTGGCTTGCAGTTCAATTCCGATAGCGTATGGGAGAAGTTTCTACCACCGCCGGATTATGTATCTCTGCTTCCAAAATCGCGAGTTTTCTCTTCAAAGAAGGAACTCTATTTCGCTCTTTGCGATCCGTTTCCAAACCACAATGGCAAAATGAGTTTCAGATTAGATAAAGCGAGTGGAAAGAAGTGTGTAATGTTATCTGCAAAGAAACTCTTGATCAGTCGGGTAGTAAATCCTAAGTATTGGAAATGGATCTCAATTCCAGAATCTAGGTTTGATGAAGTACCAGAACTTCTCAATATAGATTCTTTCGATATACGTGGTGTGTTGAATACTCGAATCATATCTCCAGGAACTCATTACTCAGCTTACATTGTGTACACAAAAACATCTCATTTTAATGGCTTTCAAACTTCTCCCATACAAGCTGGAGTTGGATTTCAGAGACATGGAATGTCTAAGACATTCATACGTTTTGATTCGAAGAAGAGGCAAGATGGGTGGATGGAGGCAAAGATTGGGGATTTTTACAATGAAGGAGGATTAATAGGTTTCAATCTAATTGAGGTGAGTGTTGTAGACGTTGCTCGCTACCCTCATATGAATATGAAGAGTGGTTTGATTATTGAAGGCATTGAATTCCGGCCAAAGGATAGTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

284

Amino Acids

32.01

Weight (kDa)

8.84

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	125 - 280	4.7e-42	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca	FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica	MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica	Prupe.6G356300_v2.0.a1
pyrus_communis	pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis	RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata	RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora	Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa	Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha	Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana	Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	771
AccII	CGCG	2 cut(s)	164, 274
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	2 cut(s)	311, 452
AcoI	YGGCCR	1 cut(s)	836
AcsI	RAATTY	3 cut(s)	44, 74, 830
AfaI	GTAC	3 cut(s)	151, 477, 572
AfiI	CCNNNNNNNGG	1 cut(s)	841
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	7 cut(s)	208, 288, 523, 602, 748, 821, 830
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	5 cut(s)	128, 138, 192, 560, 620
AluI	AGCT	5 cut(s)	128, 138, 192, 560, 620
Alw26I	GTCTC	1 cut(s)	631
AlwI	GGATC	2 cut(s)	311, 452
AoxI	GGCC	2 cut(s)	4, 836
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	3 cut(s)	44, 74, 830
AseI	ATTAAT	1 cut(s)	737
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	772
AsuII	TTCGAA	2 cut(s)	185, 674
BarI	GAAGNNNNNNTAC	4 cut(s)	246, 278, 468, 500
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	2 cut(s)	683, 691
BciT130I	CCWGG	1 cut(s)	543
BclI	TGATCA	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	631
BfaI	CTAG	1 cut(s)	462
BisI	GCNGC	1 cut(s)	174
BlpI	GCTNAGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	175
BmcAI	AGTACT	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	543
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	1 cut(s)	104
BpmI	CTGGAG	2 cut(s)	525, 642
Bpu1102I	GCTNAGC	1 cut(s)	124
Bpu14I	TTCGAA	2 cut(s)	185, 674
BsaAI	YACGTR	1 cut(s)	512
BsaJI	CCNNGG	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	841
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	1 cut(s)	702
BseLI	CCNNNNNNNGG	1 cut(s)	841
BseMII	CTCAG	1 cut(s)	570
BseXI	GCAGC	1 cut(s)	160
Bsh1236I	CGCG	2 cut(s)	164, 274
BshFI	GGCC	2 cut(s)	6, 838
BsiSI	CCGG	2 cut(s)	245, 835
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	841
BsmAI	GTCTC	1 cut(s)	631
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	2 cut(s)	6, 838
Bsp119I	TTCGAA	2 cut(s)	185, 674
Bsp1407I	TGTACA	1 cut(s)	570
Bsp143I	GATC	3 cut(s)	316, 408, 444
Bsp1720I	GCTNAGC	1 cut(s)	124
Bsp68I	TCGCGA	1 cut(s)	274
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	2 cut(s)	6, 838
BspCNI	CTCAG	1 cut(s)	569
BspFNI	CGCG	2 cut(s)	164, 274
BspPI	GGATC	2 cut(s)	311, 452
BspT104I	TTCGAA	2 cut(s)	185, 674
BsrGI	TGTACA	1 cut(s)	570
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	3 cut(s)	316, 408, 444
Bst2UI	CCWGG	1 cut(s)	543
Bst6I	CTCTTC	3 cut(s)	289, 674, 797
BstAUI	TGTACA	1 cut(s)	570
BstBAI	YACGTR	1 cut(s)	512
BstBI	TTCGAA	2 cut(s)	185, 674
BstC8I	GCNNGC	2 cut(s)	200, 781
BstDEI	CTNAG	4 cut(s)	124, 429, 556, 651
BstDSI	CCRYGG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	702
BstFNI	CGCG	2 cut(s)	164, 274
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	3 cut(s)	319, 411, 447
BstMAI	GTCTC	1 cut(s)	631
BstMBI	GATC	3 cut(s)	316, 408, 444
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	543
BstSCI	CCNGG	1 cut(s)	541
BstUI	CGCG	2 cut(s)	164, 274
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	444
BstXI	CCANNNNNNTGG	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	444
BsuRI	GGCC	2 cut(s)	6, 838
BtgI	CCRYGG	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	702
BtsIMutI	CAGTG	1 cut(s)	69
BtuMI	TCGCGA	1 cut(s)	274
Cac8I	GCNNGC	2 cut(s)	200, 781
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	3 cut(s)	150, 476, 571
CspCI	CAANNNNNGTGG	2 cut(s)	674, 709
CviAII	CATG	2 cut(s)	14, 641
CviJI	RGCY	9 cut(s)	6, 128, 138, 192, 198, 560, 597, 620, 838
CviKI_1	RGCY	9 cut(s)	6, 128, 138, 192, 198, 560, 597, 620, 838
CviQI	GTAC	3 cut(s)	150, 476, 571
DdeI	CTNAG	4 cut(s)	124, 429, 556, 651
DpnI	GATC	3 cut(s)	318, 410, 446
DpnII	GATC	3 cut(s)	316, 408, 444
EaeI	YGGCCR	1 cut(s)	836
Eam1104I	CTCTTC	3 cut(s)	289, 674, 797
EarI	CTCTTC	3 cut(s)	289, 674, 797
EcoRI	GAATTC	1 cut(s)	830
EcoRII	CCWGG	1 cut(s)	541
FaeI	CATG	2 cut(s)	17, 644
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	2 cut(s)	13, 640
FauNDI	CATATG	1 cut(s)	792
FbaI	TGATCA	1 cut(s)	408
FblI	GTMKAC	1 cut(s)	771
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	1 cut(s)	709
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	462
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	174
GsuI	CTGGAG	2 cut(s)	525, 642
HaeIII	GGCC	2 cut(s)	6, 838
HapII	CCGG	2 cut(s)	245, 835
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	17, 644
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	190
HinfI	GANTC	5 cut(s)	64, 458, 497, 531, 671
HpaII	CCGG	2 cut(s)	245, 835
HphI	GGTGA	1 cut(s)	772
Hpy166II	GTNNAC	4 cut(s)	22, 571, 573, 772
Hpy188I	TCNGA	3 cut(s)	214, 353, 636
Hpy188III	TCNNGA	3 cut(s)	273, 406, 455
Hpy8I	GTNNAC	4 cut(s)	22, 571, 573, 772
HpyAV	CCTTC	3 cut(s)	286, 722, 815
HpyCH4IV	ACGT	3 cut(s)	511, 664, 774
HpyCH4V	TGCA	2 cut(s)	202, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	4 cut(s)	124, 429, 556, 651
HpySE526I	ACGT	3 cut(s)	511, 664, 774
Hsp92II	CATG	2 cut(s)	17, 644
HspAI	GCGC	1 cut(s)	39
Ksp22I	TGATCA	1 cut(s)	408
Kzo9I	GATC	3 cut(s)	316, 408, 444
LpnPI	CCDG	8 cut(s)	126, 258, 468, 492, 528, 555, 606, 848
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	104
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	3 cut(s)	511, 664, 774
MalI	GATC	3 cut(s)	318, 410, 446
MboI	GATC	3 cut(s)	316, 408, 444
MboII	GAAGA	5 cut(s)	81, 276, 688, 691, 814
MflI	RGATCY	1 cut(s)	444
MluCI	AATT	6 cut(s)	44, 74, 208, 450, 753, 830
MluI	ACGCGT	1 cut(s)	162
MmeI	TCCRAC	1 cut(s)	607
MnlI	CCTC	6 cut(s)	23, 675, 694, 725, 751, 798
MseI	TTAA	2 cut(s)	591, 737
MslI	CAYNNNNRTG	1 cut(s)	591
MspI	CCGG	2 cut(s)	245, 835
MspR9I	CCNGG	1 cut(s)	543
MvaI	CCWGG	1 cut(s)	543
MvnI	CGCG	2 cut(s)	164, 274
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeI	CATATG	1 cut(s)	792
NdeII	GATC	3 cut(s)	316, 408, 444
NlaIII	CATG	2 cut(s)	17, 644
NruI	TCGCGA	1 cut(s)	274
NspV	TTCGAA	2 cut(s)	185, 674
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PfeI	GAWTC	5 cut(s)	64, 458, 497, 531, 671
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	1 cut(s)	175
Ppu21I	YACGTR	1 cut(s)	512
PshBI	ATTAAT	1 cut(s)	737
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	444
RruI	TCGCGA	1 cut(s)	274
RsaI	GTAC	3 cut(s)	151, 477, 572
RsaNI	GTAC	3 cut(s)	150, 476, 571
RseI	CAYNNNNRTG	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	591, 737
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	3 cut(s)	316, 408, 444
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	543
SfaNI	GCATC	1 cut(s)	104
SfuI	TTCGAA	2 cut(s)	185, 674
SmiMI	CAYNNNNRTG	1 cut(s)	591
Sse9I	AATT	6 cut(s)	44, 74, 208, 450, 753, 830
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	1 cut(s)	462
StyD4I	CCNGG	1 cut(s)	541
TaiI	ACGT	3 cut(s)	514, 667, 777
TaqI	TCGA	5 cut(s)	102, 185, 504, 529, 674
TasI	AATT	6 cut(s)	44, 74, 208, 450, 753, 830
TatI	WGTACW	2 cut(s)	149, 570
TfiI	GAWTC	5 cut(s)	64, 458, 497, 531, 671
Tru1I	TTAA	2 cut(s)	591, 737
Tru9I	TTAA	2 cut(s)	591, 737
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	1 cut(s)	173
TspDTI	ATGAA	5 cut(s)	486, 649, 741, 809, 815
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	76
VspI	ATTAAT	1 cut(s)	737
XapI	RAATTY	3 cut(s)	44, 74, 830
XmiI	GTMKAC	1 cut(s)	771
XspI	CTAG	1 cut(s)	462
ZrmI	AGTACT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.