RchiOBHm_Chr3g0448501

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000189
Physical Location & Seq
Forward (+)
715063 .. 716598
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41593

Sequence Viewer

Length: 849 bp
ATGCTGCATCATATAGACTTGCAAGCGTTGCCGGAAGGATGCATTGCCAATGTGATCTCATTGACCAGTCCTCCAGATGCGTGCAGGCTATCGGTGCTTTCTAGGGTTATCAGATTGGCAGCAGAATCCGACGCCGTTTGGGACAAGTTCCTTCCGCCTGAGACCCATGAGATCCTATCCCATTCCGCCACTGCCTCCGCTGCCAAATCCAAGAAAGAGCTCTACATGGCTCTCAGCCACAGCCCCGTCCTCATTGACGATGGCACTATGAGCTTTTCTCTGGAAAAATGGACTGGAAAGAAATGTTACATGATAGCTGCAAAGCGCCTTCGGATTGCTTGGGGTGATACTCCTCTCTATTGGCAATGGATTACTCTGCCTAACACCAGGTTCGAGGAAGTGGCTGAGCTTCAGTGGGTTGGTTGGTTTGAAATTCGTGGGAGAATTGCTACACGTAAGCTTTCCCCATCAACTCTATATAAAGCTTATCTTGTGTACAAGTTCAATGCACACTCTTATGGATTTGATTACTCTCCTGTGGTGGTGGCGGTTTCTACAAGGCCTTATGGCTTTGATTATGAATGCCCTAGTTTGAGAGAAATTGTTGATGGAGGAGACCTTAAGCACACTGCCTTTCTGGCGCATCCTGAAAGAGAAATGGATGAAGCTGATGATCTGCTGTTTCCAAAGGAAACGGCAGATGGCTGGTTGGAGATGAAGTTGGGTGAATTTTTCTGTGAAGGAGGAAAAGATGAAGAGTTGGAGATGATTTGTTGTGAGATTGATATTAGCAGCAAGAGTGGCATCATTGTGCAAGGGATTGAGATCAGACCATGCGATAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

282

Amino Acids

31.92

Weight (kDa)

5.17

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 100 - 278 9.6e-47 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 155, 186, 198, 548
AclWI GGATC 1 cut(s) 166
AcsI RAATTY 2 cut(s) 432, 728
AcuI CTGAAG 1 cut(s) 395
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 1 cut(s) 497
AflII CTTAAG 1 cut(s) 620
AflIII ACRYGT 1 cut(s) 452
AgsI TTSAA 2 cut(s) 431, 505
AjnI CCWGG 1 cut(s) 386
AluBI AGCT 7 cut(s) 220, 273, 317, 409, 460, 485, 668
AluI AGCT 7 cut(s) 220, 273, 317, 409, 460, 485, 668
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 2 cut(s) 155, 609
AlwI GGATC 1 cut(s) 166
AoxI GGCC 1 cut(s) 560
ApeKI GCWGC 5 cut(s) 4, 119, 200, 317, 792
ApoI RAATTY 2 cut(s) 432, 728
AspLEI GCGC 2 cut(s) 327, 643
AsuHPI GGTGA 2 cut(s) 356, 737
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 4 cut(s) 131, 187, 304, 804
BccI CCATC 4 cut(s) 254, 475, 602, 695
BceAI ACGGC 2 cut(s) 119, 711
BciT130I CCWGG 1 cut(s) 388
BcoDI GTCTC 2 cut(s) 155, 609
BfaI CTAG 3 cut(s) 102, 588, 847
BfoI RGCGCY 1 cut(s) 328
BfrI CTTAAG 1 cut(s) 620
BglI GCCNNNNNGGC 1 cut(s) 638
BisI GCNGC 5 cut(s) 5, 120, 201, 318, 793
BlpI GCTNAGC 1 cut(s) 405
BlsI GCNGC 5 cut(s) 6, 121, 202, 319, 794
Bme1390I CCNGG 1 cut(s) 388
BmrFI CCNGG 1 cut(s) 388
BmsI GCATC 5 cut(s) 16, 29, 67, 652, 813
BplI GAGNNNNNCTC 2 cut(s) 262, 294
BpmI CTGGAG 1 cut(s) 57
Bpu1102I GCTNAGC 1 cut(s) 405
BsaAI YACGTR 1 cut(s) 455
BsaBI GATNNNNATC 1 cut(s) 824
BsaHI GRCGYC 1 cut(s) 132
BsaI GGTCTC 2 cut(s) 155, 609
BsaXI ACNNNNNCTCC 4 cut(s) 55, 85, 704, 734
Bse1I ACTGG 2 cut(s) 66, 298
Bse3DI GCAATG 2 cut(s) 42, 371
Bse8I GATNNNNATC 1 cut(s) 824
BseBI CCWGG 1 cut(s) 388
BseGI GGATG 3 cut(s) 44, 643, 667
BseJI GATNNNNATC 1 cut(s) 824
BseMI GCAATG 2 cut(s) 42, 371
BseMII CTCAG 3 cut(s) 150, 247, 396
BseNI ACTGG 2 cut(s) 66, 298
BseRI GAGGAG 2 cut(s) 342, 627
BseXI GCAGC 4 cut(s) 131, 187, 304, 804
BsgI GTGCAG 1 cut(s) 103
BshFI GGCC 1 cut(s) 562
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 155
BsmAI GTCTC 2 cut(s) 155, 609
BsmFI GGGAC 1 cut(s) 155
BsmI GAATGC 1 cut(s) 587
BsnI GGCC 1 cut(s) 562
Bso31I GGTCTC 2 cut(s) 155, 609
Bsp1286I GDGCHC 1 cut(s) 222
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 4 cut(s) 54, 171, 673, 825
Bsp1720I GCTNAGC 1 cut(s) 405
BspACI CCGC 4 cut(s) 155, 186, 198, 548
BspANI GGCC 1 cut(s) 562
BspCNI CTCAG 3 cut(s) 151, 246, 397
BspPI GGATC 1 cut(s) 166
BspTI CTTAAG 1 cut(s) 620
BspTNI GGTCTC 2 cut(s) 155, 609
BsrDI GCAATG 2 cut(s) 42, 371
BsrGI TGTACA 1 cut(s) 495
BsrI ACTGG 2 cut(s) 66, 298
BssMI GATC 4 cut(s) 54, 171, 673, 825
BssNI GRCGYC 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 388
Bst6I CTCTTC 1 cut(s) 750
BstACI GRCGYC 1 cut(s) 132
BstAFI CTTAAG 1 cut(s) 620
BstAPI GCANNNNNTGC 1 cut(s) 28
BstAUI TGTACA 1 cut(s) 495
BstBAI YACGTR 1 cut(s) 455
BstC8I GCNNGC 3 cut(s) 24, 82, 86
BstDEI CTNAG 3 cut(s) 159, 233, 405
BstF5I GGATG 3 cut(s) 44, 643, 667
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 2 cut(s) 327, 643
BstKTI GATC 4 cut(s) 57, 174, 676, 828
BstMAI GTCTC 2 cut(s) 155, 609
BstMBI GATC 4 cut(s) 54, 171, 673, 825
BstMWI GCNNNNNNNGC 6 cut(s) 28, 94, 200, 270, 638, 801
BstNI CCWGG 1 cut(s) 388
BstSCI CCNGG 1 cut(s) 386
BstV1I GCAGC 4 cut(s) 131, 187, 304, 804
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BsuRI GGCC 1 cut(s) 562
BtsCI GGATG 3 cut(s) 44, 643, 667
BtsI GCAGTG 2 cut(s) 189, 627
BtsIMutI CAGTG 3 cut(s) 189, 419, 627
Cac8I GCNNGC 3 cut(s) 24, 82, 86
CfoI GCGC 2 cut(s) 327, 643
CseI GACGC 1 cut(s) 140
CsiI ACCWGGT 1 cut(s) 386
Csp6I GTAC 1 cut(s) 496
CviAII CATG 4 cut(s) 167, 226, 310, 834
CviQI GTAC 1 cut(s) 496
DdeI CTNAG 3 cut(s) 159, 233, 405
DpnI GATC 4 cut(s) 56, 173, 675, 827
DpnII GATC 4 cut(s) 54, 171, 673, 825
Eam1104I CTCTTC 1 cut(s) 750
EarI CTCTTC 1 cut(s) 750
EciI GGCGGA 2 cut(s) 144, 175
Ecl136II GAGCTC 1 cut(s) 220
Eco147I AGGCCT 1 cut(s) 562
Eco24I GRGCYC 1 cut(s) 222
Eco31I GGTCTC 2 cut(s) 155, 609
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 395
EcoICRI GAGCTC 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 386
EcoT22I ATGCAT 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 222
FaeI CATG 4 cut(s) 170, 229, 313, 837
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FaqI GGGAC 1 cut(s) 155
FatI CATG 4 cut(s) 166, 225, 309, 833
Fnu4HI GCNGC 5 cut(s) 5, 120, 201, 318, 793
FokI GGATG 3 cut(s) 51, 630, 674
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 5 cut(s) 5, 120, 201, 318, 793
FspBI CTAG 3 cut(s) 102, 588, 847
GlaI GCGC 2 cut(s) 326, 642
GluI GCNGC 5 cut(s) 5, 120, 201, 318, 793
GsuI CTGGAG 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 1 cut(s) 562
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 140
HhaI GCGC 2 cut(s) 327, 643
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 4 cut(s) 170, 229, 313, 837
Hin6I GCGC 2 cut(s) 325, 641
HinP1I GCGC 2 cut(s) 325, 641
HindIII AAGCTT 2 cut(s) 458, 483
HinfI GANTC 1 cut(s) 125
HpaII CCGG 1 cut(s) 32
HphI GGTGA 2 cut(s) 356, 737
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 4 cut(s) 113, 130, 333, 830
Hpy188III TCNNGA 3 cut(s) 74, 281, 647
Hpy8I GTNNAC 1 cut(s) 496
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 4 cut(s) 29, 161, 338, 734
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 7 cut(s) 7, 22, 42, 84, 320, 509, 814
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 94, 200, 270, 638, 801
HpyF3I CTNAG 3 cut(s) 159, 233, 405
HpySE526I ACGT 1 cut(s) 454
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 4 cut(s) 170, 229, 313, 837
HspAI GCGC 2 cut(s) 325, 641
Kzo9I GATC 4 cut(s) 54, 171, 673, 825
Lsp1109I GCAGC 4 cut(s) 131, 187, 304, 804
LweI GCATC 5 cut(s) 16, 29, 67, 652, 813
MabI ACCWGGT 1 cut(s) 386
MaeI CTAG 3 cut(s) 102, 588, 847
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 1 cut(s) 305
MalI GATC 4 cut(s) 56, 173, 675, 827
MboI GATC 4 cut(s) 54, 171, 673, 825
MboII GAAGA 1 cut(s) 767
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 4 cut(s) 432, 444, 600, 728
MmeI TCCRAC 3 cut(s) 153, 690, 741
MnlI CCTC 7 cut(s) 81, 205, 260, 363, 388, 605, 737
Mph1103I ATGCAT 1 cut(s) 44
MseI TTAA 1 cut(s) 621
MslI CAYNNNNRTG 2 cut(s) 516, 809
MspA1I CMGCKG 1 cut(s) 200
MspCI CTTAAG 1 cut(s) 620
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 388
Mva1269I GAATGC 1 cut(s) 587
MvaI CCWGG 1 cut(s) 388
MwoI GCNNNNNNNGC 6 cut(s) 28, 94, 200, 270, 638, 801
NdeII GATC 4 cut(s) 54, 171, 673, 825
NlaIII CATG 4 cut(s) 170, 229, 313, 837
NsiI ATGCAT 1 cut(s) 44
PceI AGGCCT 1 cut(s) 562
PctI GAATGC 1 cut(s) 587
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 5 cut(s) 6, 121, 202, 319, 794
Ppu21I YACGTR 1 cut(s) 455
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 386
PspGI CCWGG 1 cut(s) 386
PsuI RGATCY 1 cut(s) 171
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
RseI CAYNNNNRTG 2 cut(s) 516, 809
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 621
SatI GCNGC 5 cut(s) 5, 120, 201, 318, 793
Sau3AI GATC 4 cut(s) 54, 171, 673, 825
ScrFI CCNGG 1 cut(s) 388
SduI GDGCHC 1 cut(s) 222
SexAI ACCWGGT 1 cut(s) 386
SfaNI GCATC 5 cut(s) 16, 29, 67, 652, 813
SmiMI CAYNNNNRTG 2 cut(s) 516, 809
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
Sse9I AATT 4 cut(s) 432, 444, 600, 728
SseBI AGGCCT 1 cut(s) 562
SsiI CCGC 4 cut(s) 155, 186, 198, 548
SspMI CTAG 3 cut(s) 102, 588, 847
SstI GAGCTC 1 cut(s) 222
StuI AGGCCT 1 cut(s) 562
StyD4I CCNGG 1 cut(s) 386
TaiI ACGT 1 cut(s) 457
TaqI TCGA 1 cut(s) 393
TasI AATT 4 cut(s) 432, 444, 600, 728
TatI WGTACW 1 cut(s) 495
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TscAI CASTG 3 cut(s) 196, 419, 634
TseI GCWGC 5 cut(s) 4, 119, 200, 317, 792
TspDTI ATGAA 4 cut(s) 594, 678, 731, 768
TspRI CASTG 3 cut(s) 196, 419, 634
Vha464I CTTAAG 1 cut(s) 620
XapI RAATTY 2 cut(s) 432, 728
XspI CTAG 3 cut(s) 102, 588, 847
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.