RchiOBHm_Chr3g0450281

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000189
Physical Location & Seq
Forward (+)
1865233 .. 1866469
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41762

Sequence Viewer

Length: 759 bp
ATGGATTTGCTGCAGTTGCCGGAGGGTTGCATAGCCAACATCGTATCGTTGACAACTCCTGAAGATGCCTGCCGCCTGTCGTTGGTCTGTAAGATTTTCAAGTCAGCAGCGGAATCCGACTCCGTTTGGGACAGGTTCCTTCCGCCTGAGACACCCAAGATCCTGTCCGAGTCCGGCGAATCTGGATTATTGGCCGCCAAATCCAAGAAGGAGCTTTACCTCGCTCTCTGCGACAAACCTGTCCTCATCAACGACGGTAAATTGAGCTTTTCACTGGAGAAATGGAGTGGGAAAAAATGTTACATGATATCTGCAAGAGAGCTTGGTATTATCTGGAGCCATATTCCCCGGTTTTGGACATGGACTTCTCATCCTGAATCCAGGTTTCCGGAGGTGGCTGAGCTTCTTGAGGTTTGCTGGCTTGAAATCATTGGGAAACTTGAAACACGCTTGCTGTCCCCATCGACTCTGTACAAAGCTTACCTTTTGTTCAAGTTTACTCGAAGGGCCAATGGATTTGATCACCTACCTGCGGATGTCACTGTAGGTCTGGAGGGAGGAGAACAGAGTAAACAGACTCAGTTTCTTCACAACGAAGGGGAGAGATCTGGGTGGTTGGAGATTGAGCTGGGTGAGTTTTTTTGTGAAGGGGAAGAAGATGGGCTGTTGAAAATGCGTTGTGTGGCGAAGGAGGGTCTTAATTGGAAGAGCGGTCTTATTGTTCAAGGCATTGAGGTCAGGCCTAAGAGGAAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

252

Amino Acids

28.53

Weight (kDa)

5.74

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 44 1.2e-07 F-box domain
F-box-like PF12937 4 - 46 3.8e-07 F-box-like
PP2 PF14299 98 - 248 8.9e-50 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
Acc36I ACCTGC 1 cut(s) 538
AccBSI CCGCTC 1 cut(s) 711
AccIII TCCGGA 1 cut(s) 388
AciI CCGC 6 cut(s) 73, 110, 143, 195, 533, 711
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 2 cut(s) 473, 755
AfiI CCNNNNNNNGG 3 cut(s) 82, 354, 532
AgsI TTSAA 6 cut(s) 100, 425, 443, 493, 670, 725
AjnI CCWGG 1 cut(s) 380
AluBI AGCT 6 cut(s) 214, 267, 322, 403, 479, 628
AluI AGCT 6 cut(s) 214, 267, 322, 403, 479, 628
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 1 cut(s) 154
Aor13HI TCCGGA 1 cut(s) 388
AoxI GGCC 3 cut(s) 192, 507, 740
ApeKI GCWGC 2 cut(s) 10, 107
AspS9I GGNCC 1 cut(s) 507
AsuC2I CCSGG 1 cut(s) 349
AsuHPI GGTGA 2 cut(s) 515, 644
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BbvI GCAGC 1 cut(s) 119
BccI CCATC 2 cut(s) 469, 653
BciT130I CCWGG 1 cut(s) 382
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 757
BfmI CTRYAG 2 cut(s) 11, 543
BfuAI ACCTGC 1 cut(s) 538
BglII AGATCT 1 cut(s) 605
BisI GCNGC 4 cut(s) 11, 73, 108, 195
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 4 cut(s) 12, 74, 109, 196
BmcAI AGTACT 1 cut(s) 755
Bme1390I CCNGG 2 cut(s) 349, 382
BmgT120I GGNCC 1 cut(s) 507
BmiI GGNNCC 2 cut(s) 137, 338
BmrFI CCNGG 2 cut(s) 349, 382
BmsI GCATC 1 cut(s) 55
BpmI CTGGAG 3 cut(s) 296, 355, 572
Bpu1102I GCTNAGC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 428
BpuMI CCSGG 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 347
BsaWI WCCGGW 1 cut(s) 388
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 354, 532
Bse1I ACTGG 1 cut(s) 279
BseAI TCCGGA 1 cut(s) 388
BseBI CCWGG 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 347
BseGI GGATG 2 cut(s) 370, 541
BseLI CCNNNNNNNGG 3 cut(s) 82, 354, 532
BseMII CTCAG 3 cut(s) 138, 390, 593
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 573
BseXI GCAGC 1 cut(s) 119
BseYI CCCAGC 1 cut(s) 628
BshFI GGCC 3 cut(s) 194, 509, 742
BsiSI CCGG 4 cut(s) 20, 174, 349, 389
BslFI GGGAC 2 cut(s) 143, 442
BslI CCNNNNNNNGG 3 cut(s) 82, 354, 532
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 2 cut(s) 143, 442
BsnI GGCC 3 cut(s) 194, 509, 742
Bsp13I TCCGGA 1 cut(s) 388
Bsp1407I TGTACA 1 cut(s) 471
Bsp143I GATC 3 cut(s) 159, 520, 605
Bsp1720I GCTNAGC 1 cut(s) 399
BspACI CCGC 6 cut(s) 73, 110, 143, 195, 533, 711
BspANI GGCC 3 cut(s) 194, 509, 742
BspCNI CTCAG 3 cut(s) 139, 391, 592
BspEI TCCGGA 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 137, 338
BspMAI CTGCAG 1 cut(s) 15
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 1 cut(s) 154
BspQI GCTCTTC 1 cut(s) 701
BsrBI CCGCTC 1 cut(s) 711
BsrGI TGTACA 1 cut(s) 471
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 347
BssMI GATC 3 cut(s) 159, 520, 605
Bst2UI CCWGG 1 cut(s) 382
Bst4CI ACNGT 2 cut(s) 257, 544
Bst6I CTCTTC 1 cut(s) 701
BstAUI TGTACA 1 cut(s) 471
BstC8I GCNNGC 3 cut(s) 70, 419, 452
BstDEI CTNAG 4 cut(s) 147, 399, 579, 744
BstF5I GGATG 2 cut(s) 370, 541
BstKTI GATC 3 cut(s) 162, 523, 608
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 3 cut(s) 159, 520, 605
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 1 cut(s) 382
BstSCI CCNGG 2 cut(s) 347, 380
BstSFI CTRYAG 2 cut(s) 11, 543
BstV1I GCAGC 1 cut(s) 119
BstX2I RGATCY 2 cut(s) 159, 605
BstYI RGATCY 2 cut(s) 159, 605
BsuRI GGCC 3 cut(s) 194, 509, 742
BtsCI GGATG 2 cut(s) 370, 541
BtsIMutI CAGTG 2 cut(s) 272, 540
BveI ACCTGC 1 cut(s) 538
Cac8I GCNNGC 3 cut(s) 70, 419, 452
Cfr13I GGNCC 1 cut(s) 507
Csp6I GTAC 2 cut(s) 472, 754
CviAII CATG 2 cut(s) 304, 360
CviQI GTAC 2 cut(s) 472, 754
DdeI CTNAG 4 cut(s) 147, 399, 579, 744
DpnI GATC 3 cut(s) 161, 522, 607
DpnII GATC 3 cut(s) 159, 520, 605
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 701
EarI CTCTTC 1 cut(s) 701
EciI GGCGGA 1 cut(s) 132
Eco147I AGGCCT 1 cut(s) 742
Eco32I GATATC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 380
EcoRV GATATC 1 cut(s) 309
FaeI CATG 2 cut(s) 307, 363
FaiI YATR 4 cut(s) 32, 305, 342, 361
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 2 cut(s) 143, 442
FatI CATG 2 cut(s) 303, 359
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 4 cut(s) 11, 73, 108, 195
FokI GGATG 2 cut(s) 357, 548
Fsp4HI GCNGC 4 cut(s) 11, 73, 108, 195
FspBI CTAG 1 cut(s) 757
GluI GCNGC 4 cut(s) 11, 73, 108, 195
GsaI CCCAGC 1 cut(s) 632
GsuI CTGGAG 3 cut(s) 296, 355, 572
HaeIII GGCC 3 cut(s) 194, 509, 742
HapII CCGG 4 cut(s) 20, 174, 349, 389
Hin1II CATG 2 cut(s) 307, 363
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 477
HinfI GANTC 7 cut(s) 113, 119, 170, 179, 377, 466, 577
HpaII CCGG 4 cut(s) 20, 174, 349, 389
HphI GGTGA 2 cut(s) 515, 644
Hpy166II GTNNAC 3 cut(s) 51, 498, 572
Hpy188I TCNGA 2 cut(s) 118, 169
Hpy188III TCNNGA 7 cut(s) 59, 183, 334, 374, 389, 407, 551
Hpy8I GTNNAC 3 cut(s) 51, 498, 572
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 6 cut(s) 149, 202, 498, 590, 641, 682
HpyCH4III ACNGT 2 cut(s) 257, 544
HpyCH4V TGCA 3 cut(s) 13, 30, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 4 cut(s) 147, 399, 579, 744
Hsp92II CATG 2 cut(s) 307, 363
Kpn2I TCCGGA 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 3 cut(s) 159, 520, 605
LguI GCTCTTC 1 cut(s) 701
LmnI GCTCC 2 cut(s) 211, 336
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 1 cut(s) 55
MaeI CTAG 1 cut(s) 757
MaeIII GTNAC 2 cut(s) 299, 538
MalI GATC 3 cut(s) 161, 522, 607
MbiI CCGCTC 1 cut(s) 711
MboI GATC 3 cut(s) 159, 520, 605
MboII GAAGA 5 cut(s) 74, 578, 665, 668, 718
MflI RGATCY 2 cut(s) 159, 605
MluCI AATT 2 cut(s) 260, 700
MlyI GAGTC 4 cut(s) 113, 179, 460, 571
MmeI TCCRAC 2 cut(s) 141, 597
MroI TCCGGA 1 cut(s) 388
MseI TTAA 1 cut(s) 699
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 4 cut(s) 20, 174, 349, 389
MspR9I CCNGG 2 cut(s) 349, 382
MvaI CCWGG 1 cut(s) 382
MwoI GCNNNNNNNGC 1 cut(s) 16
NciI CCSGG 1 cut(s) 349
NdeII GATC 3 cut(s) 159, 520, 605
NlaIII CATG 2 cut(s) 307, 363
NlaIV GGNNCC 2 cut(s) 137, 338
NmuCI GTSAC 1 cut(s) 538
PceI AGGCCT 1 cut(s) 742
PciSI GCTCTTC 1 cut(s) 701
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PfeI GAWTC 3 cut(s) 113, 179, 377
PkrI GCNGC 4 cut(s) 12, 74, 109, 196
PleI GAGTC 4 cut(s) 113, 178, 460, 571
PpsI GAGTC 4 cut(s) 113, 178, 460, 571
Psp6I CCWGG 1 cut(s) 380
PspFI CCCAGC 1 cut(s) 628
PspGI CCWGG 1 cut(s) 380
PspN4I GGNNCC 2 cut(s) 137, 338
PspPI GGNCC 1 cut(s) 507
PstI CTGCAG 1 cut(s) 15
PsuI RGATCY 2 cut(s) 159, 605
RsaI GTAC 2 cut(s) 473, 755
RsaNI GTAC 2 cut(s) 472, 754
SapI GCTCTTC 1 cut(s) 701
SaqAI TTAA 1 cut(s) 699
SatI GCNGC 4 cut(s) 11, 73, 108, 195
Sau3AI GATC 3 cut(s) 159, 520, 605
Sau96I GGNCC 1 cut(s) 507
ScaI AGTACT 1 cut(s) 755
SchI GAGTC 4 cut(s) 113, 179, 460, 571
ScrFI CCNGG 2 cut(s) 349, 382
SfaNI GCATC 1 cut(s) 55
SfcI CTRYAG 2 cut(s) 11, 543
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 2 cut(s) 260, 700
SseBI AGGCCT 1 cut(s) 742
SsiI CCGC 6 cut(s) 73, 110, 143, 195, 533, 711
SspMI CTAG 1 cut(s) 757
StuI AGGCCT 1 cut(s) 742
StyD4I CCNGG 2 cut(s) 347, 380
TaaI ACNGT 2 cut(s) 257, 544
TaqI TCGA 2 cut(s) 464, 502
TasI AATT 2 cut(s) 260, 700
TatI WGTACW 2 cut(s) 471, 753
TauI GCSGC 2 cut(s) 75, 197
TfiI GAWTC 3 cut(s) 113, 179, 377
Tru1I TTAA 1 cut(s) 699
Tru9I TTAA 1 cut(s) 699
TscAI CASTG 2 cut(s) 279, 547
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 2 cut(s) 10, 107
Tsp45I GTSAC 1 cut(s) 538
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 2 cut(s) 279, 547
XspI CTAG 1 cut(s) 757
ZrmI AGTACT 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.