Rmu_sc0023110.1_g000002

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023110.1
OG0000189
Physical Location & Seq
Forward (+)
7287 .. 8675
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023110.1_g000002.1.cds

Sequence Viewer

Length: 870 bp
atggagaacgcggcggtgatgatggacttgcaggcgttgccggaaggctgcatagctaacgtgatctcgctgacgactcctcgagacgcatgcaggctgtcgttgatttcgagggatctcaagtcagcggcggactccgacgccgtttgggacaagttccttccgcatgagaccaatgagatcctatcccactccgaatctgcaatccacgccaaatccaagaaggagctttacttcattctctctcacaaccccatcctcatcgacgatggcaagatgagcttttcactggacaaatggagtgggaagaagtgctatatgatagctgcaaagcgccttcggattgcttggggtgatactcgttactattggaattggagatctctgcctgagtgcaggtttaaggaagcggcaaagcttcgtgctgtatgttggcttgaaatacgtgggagaattgaaacatgcatgctgtccccatccacaacgtataaagcttatctggtgtacaagttaactaaacccactcatggactgcactggccttttgtggtcacagttggcgcaagagcttatgggttcgattatgaatgccctggtttgaaggaaataactgcaggcattaagaacactgcgtttctggcgccccaaagagaaatagaaagtgagcttgcaagatatcaaaaaatcaatgaagctatatttccaaatgaaagcagggcggatgggtggctggagatggagctaggtgaatttcactgtcaaggagacgaagacggggagttggaaatgatttgttgtgagattgatactggtatgagtaagagtggtctccttgttcaaggtattgaggtcagacccgagagggagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

289

Amino Acids

32.88

Weight (kDa)

5.75

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 387
AccB1I GGYRCC 1 cut(s) 640
AccII CGCG 1 cut(s) 11
AciI CCGC 7 cut(s) 11, 14, 128, 131, 164, 410, 719
AclWI GGATC 2 cut(s) 123, 175
AcsI RAATTY 1 cut(s) 749
AcyI GRCGYC 2 cut(s) 141, 641
AfaI GTAC 1 cut(s) 506
AfiI CCNNNNNNNGG 1 cut(s) 527
AgsI TTSAA 4 cut(s) 440, 458, 601, 839
AjnI CCWGG 1 cut(s) 592
Alw26I GTCTC 4 cut(s) 78, 164, 759, 833
AlwI GGATC 2 cut(s) 123, 175
Ama87I CYCGRG 2 cut(s) 81, 857
AoxI GGCC 1 cut(s) 539
ApeKI GCWGC 2 cut(s) 48, 326
ApoI RAATTY 1 cut(s) 749
AspLEI GCGC 3 cut(s) 336, 563, 643
AsuHPI GGTGA 3 cut(s) 28, 365, 758
AvaI CYCGRG 2 cut(s) 81, 857
BanI GGYRCC 1 cut(s) 640
BarI GAAGNNNNNNTAC 2 cut(s) 215, 247
BbsI GAAGAC 1 cut(s) 777
BbvI GCAGC 2 cut(s) 35, 313
BccI CCATC 6 cut(s) 16, 263, 263, 484, 716, 730
BceAI ACGGC 1 cut(s) 128
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BciT130I CCWGG 1 cut(s) 594
BcoDI GTCTC 4 cut(s) 78, 164, 759, 833
BfaI CTAG 1 cut(s) 743
BfmI CTRYAG 1 cut(s) 612
BfoI RGCGCY 2 cut(s) 337, 644
BfuAI ACCTGC 1 cut(s) 387
BglII AGATCT 1 cut(s) 380
BisI GCNGC 5 cut(s) 12, 49, 129, 327, 411
BlsI GCNGC 5 cut(s) 13, 50, 130, 328, 412
Bme1390I CCNGG 1 cut(s) 594
BmeT110I CYCGRG 2 cut(s) 81, 857
BmiI GGNNCC 1 cut(s) 642
BmrFI CCNGG 1 cut(s) 594
BpiI GAAGAC 1 cut(s) 777
BpmI CTGGAG 1 cut(s) 752
BpuEI CTTGAG 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 446
BsaHI GRCGYC 2 cut(s) 141, 641
BsaI GGTCTC 2 cut(s) 164, 833
BsaJI CCNNGG 1 cut(s) 592
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse1I ACTGG 3 cut(s) 294, 542, 814
BseBI CCWGG 1 cut(s) 594
BseDI CCNNGG 1 cut(s) 592
BseGI GGATG 3 cut(s) 255, 476, 727
BseLI CCNNNNNNNGG 1 cut(s) 527
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 3 cut(s) 294, 542, 814
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 2 cut(s) 35, 313
BsgI GTGCAG 2 cut(s) 415, 518
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 1 cut(s) 541
BshNI GGYRCC 1 cut(s) 640
BsiHKCI CYCGRG 2 cut(s) 81, 857
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 2 cut(s) 164, 457
BslI CCNNNNNNNGG 1 cut(s) 527
BsmAI GTCTC 4 cut(s) 78, 164, 759, 833
BsmBI CGTCTC 2 cut(s) 78, 759
BsmFI GGGAC 2 cut(s) 164, 457
BsmI GAATGC 1 cut(s) 593
BsnI GGCC 1 cut(s) 541
Bso31I GGTCTC 2 cut(s) 164, 833
BsoBI CYCGRG 2 cut(s) 81, 857
Bsp1407I TGTACA 1 cut(s) 504
Bsp143I GATC 4 cut(s) 63, 115, 180, 380
BspACI CCGC 7 cut(s) 11, 14, 128, 131, 164, 410, 719
BspANI GGCC 1 cut(s) 541
BspCNI CTCAG 1 cut(s) 382
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 642
BspMAI CTGCAG 1 cut(s) 616
BspMI ACCTGC 1 cut(s) 387
BspPI GGATC 2 cut(s) 123, 175
BspT107I GGYRCC 1 cut(s) 640
BspTNI GGTCTC 2 cut(s) 164, 833
BsrGI TGTACA 1 cut(s) 504
BsrI ACTGG 3 cut(s) 294, 542, 814
BssECI CCNNGG 1 cut(s) 592
BssMI GATC 4 cut(s) 63, 115, 180, 380
BssNI GRCGYC 2 cut(s) 141, 641
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 2 cut(s) 556, 758
BstACI GRCGYC 2 cut(s) 141, 641
BstAPI GCANNNNNTGC 1 cut(s) 37
BstAUI TGTACA 1 cut(s) 504
BstBAI YACGTR 1 cut(s) 446
BstC8I GCNNGC 6 cut(s) 33, 91, 95, 467, 616, 669
BstDEI CTNAG 1 cut(s) 390
BstF5I GGATG 3 cut(s) 255, 476, 727
BstFNI CGCG 1 cut(s) 11
BstH2I RGCGCY 2 cut(s) 337, 644
BstHHI GCGC 3 cut(s) 336, 563, 643
BstKTI GATC 4 cut(s) 66, 118, 183, 383
BstMAI GTCTC 4 cut(s) 78, 164, 759, 833
BstMBI GATC 4 cut(s) 63, 115, 180, 380
BstMWI GCNNNNNNNGC 4 cut(s) 37, 209, 279, 638
BstNI CCWGG 1 cut(s) 594
BstNSI RCATGY 3 cut(s) 93, 465, 469
BstSCI CCNGG 1 cut(s) 592
BstSFI CTRYAG 1 cut(s) 612
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 35, 313
BstV2I GAAGAC 1 cut(s) 777
BstX2I RGATCY 3 cut(s) 115, 180, 380
BstYI RGATCY 3 cut(s) 115, 180, 380
BsuRI GGCC 1 cut(s) 541
BtsCI GGATG 3 cut(s) 255, 476, 727
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 4 cut(s) 287, 535, 627, 754
BveI ACCTGC 1 cut(s) 387
Cac8I GCNNGC 6 cut(s) 33, 91, 95, 467, 616, 669
CfoI GCGC 3 cut(s) 336, 563, 643
CseI GACGC 2 cut(s) 95, 149
Csp6I GTAC 1 cut(s) 505
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviAII CATG 5 cut(s) 90, 167, 462, 466, 527
CviQI GTAC 1 cut(s) 505
DdeI CTNAG 1 cut(s) 390
DinI GGCGCC 1 cut(s) 642
DpnI GATC 4 cut(s) 65, 117, 182, 382
DpnII GATC 4 cut(s) 63, 115, 180, 380
EciI GGCGGA 2 cut(s) 146, 734
Eco31I GGTCTC 2 cut(s) 164, 833
Eco32I GATATC 1 cut(s) 677
Eco88I CYCGRG 2 cut(s) 81, 857
EcoRII CCWGG 1 cut(s) 592
EcoRV GATATC 1 cut(s) 677
EcoT22I ATGCAT 1 cut(s) 467
EgeI GGCGCC 1 cut(s) 642
EheI GGCGCC 1 cut(s) 642
Esp3I CGTCTC 2 cut(s) 78, 759
FaeI CATG 5 cut(s) 93, 170, 465, 469, 530
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FaqI GGGAC 2 cut(s) 164, 457
FatI CATG 5 cut(s) 89, 166, 461, 465, 526
Fnu4HI GCNGC 5 cut(s) 12, 49, 129, 327, 411
FokI GGATG 3 cut(s) 242, 463, 734
Fsp4HI GCNGC 5 cut(s) 12, 49, 129, 327, 411
FspBI CTAG 1 cut(s) 743
GlaI GCGC 3 cut(s) 335, 562, 642
GluI GCNGC 5 cut(s) 12, 49, 129, 327, 411
GsuI CTGGAG 1 cut(s) 752
HaeII RGCGCY 2 cut(s) 337, 644
HaeIII GGCC 1 cut(s) 541
HapII CCGG 1 cut(s) 41
HgaI GACGC 2 cut(s) 95, 149
HhaI GCGC 3 cut(s) 336, 563, 643
Hin1I GRCGYC 2 cut(s) 141, 641
Hin1II CATG 5 cut(s) 93, 170, 465, 469, 530
Hin6I GCGC 3 cut(s) 334, 561, 641
HinP1I GCGC 3 cut(s) 334, 561, 641
HincII GTYRAC 1 cut(s) 513
HindII GTYRAC 1 cut(s) 513
HindIII AAGCTT 2 cut(s) 416, 492
HinfI GANTC 3 cut(s) 76, 134, 197
HpaI GTTAAC 1 cut(s) 513
HpaII CCGG 1 cut(s) 41
HphI GGTGA 3 cut(s) 28, 365, 758
Hpy166II GTNNAC 2 cut(s) 505, 513
Hpy188I TCNGA 4 cut(s) 139, 196, 342, 854
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 2 cut(s) 505, 513
Hpy99I CGWCG 2 cut(s) 143, 269
HpyAV CCTTC 5 cut(s) 38, 170, 217, 347, 595
HpyCH4III ACNGT 2 cut(s) 556, 758
HpyCH4IV ACGT 3 cut(s) 60, 445, 485
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 209, 279, 638
HpyF3I CTNAG 1 cut(s) 390
HpySE526I ACGT 3 cut(s) 60, 445, 485
Hsp92I GRCGYC 2 cut(s) 141, 641
Hsp92II CATG 5 cut(s) 93, 170, 465, 469, 530
HspAI GCGC 3 cut(s) 334, 561, 641
KasI GGCGCC 1 cut(s) 640
KspAI GTTAAC 1 cut(s) 513
Kzo9I GATC 4 cut(s) 63, 115, 180, 380
LmnI GCTCC 2 cut(s) 226, 739
Lsp1109I GCAGC 2 cut(s) 35, 313
MaeI CTAG 1 cut(s) 743
MaeII ACGT 3 cut(s) 60, 445, 485
MaeIII GTNAC 2 cut(s) 362, 550
MalI GATC 4 cut(s) 65, 117, 182, 382
MboI GATC 4 cut(s) 63, 115, 180, 380
MboII GAAGA 2 cut(s) 319, 782
MflI RGATCY 3 cut(s) 115, 180, 380
MluCI AATT 3 cut(s) 373, 453, 749
Mly113I GGCGCC 1 cut(s) 641
MlyI GAGTC 2 cut(s) 70, 128
MmeI TCCRAC 2 cut(s) 162, 762
MnlI CCTC 5 cut(s) 90, 105, 269, 841, 855
Mph1103I ATGCAT 1 cut(s) 467
MseI TTAA 3 cut(s) 402, 512, 621
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 594
Mva1269I GAATGC 1 cut(s) 593
MvaI CCWGG 1 cut(s) 594
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 4 cut(s) 37, 209, 279, 638
NarI GGCGCC 1 cut(s) 641
NdeII GATC 4 cut(s) 63, 115, 180, 380
NlaIII CATG 5 cut(s) 93, 170, 465, 469, 530
NlaIV GGNNCC 1 cut(s) 642
NmuCI GTSAC 1 cut(s) 550
NsiI ATGCAT 1 cut(s) 467
NspI RCATGY 3 cut(s) 93, 465, 469
PaeI GCATGC 2 cut(s) 93, 469
PaeR7I CTCGAG 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PctI GAATGC 1 cut(s) 593
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 5 cut(s) 13, 50, 130, 328, 412
PleI GAGTC 2 cut(s) 70, 128
PluTI GGCGCC 1 cut(s) 644
PpsI GAGTC 2 cut(s) 70, 128
Ppu21I YACGTR 1 cut(s) 446
Psp6I CCWGG 1 cut(s) 592
PspGI CCWGG 1 cut(s) 592
PspN4I GGNNCC 1 cut(s) 642
PstI CTGCAG 1 cut(s) 616
PsuI RGATCY 3 cut(s) 115, 180, 380
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
SaqAI TTAA 3 cut(s) 402, 512, 621
SatI GCNGC 5 cut(s) 12, 49, 129, 327, 411
Sau3AI GATC 4 cut(s) 63, 115, 180, 380
SchI GAGTC 2 cut(s) 70, 128
ScrFI CCNGG 1 cut(s) 594
SfcI CTRYAG 1 cut(s) 612
SfoI GGCGCC 1 cut(s) 642
Sfr274I CTCGAG 1 cut(s) 81
SlaI CTCGAG 1 cut(s) 81
SmlI CTYRAG 2 cut(s) 81, 119
SmoI CTYRAG 2 cut(s) 81, 119
SphI GCATGC 2 cut(s) 93, 469
Sse9I AATT 3 cut(s) 373, 453, 749
SsiI CCGC 7 cut(s) 11, 14, 128, 131, 164, 410, 719
SspDI GGCGCC 1 cut(s) 640
SspMI CTAG 1 cut(s) 743
StyD4I CCNGG 1 cut(s) 592
TaaI ACNGT 2 cut(s) 556, 758
TaiI ACGT 3 cut(s) 63, 448, 488
TaqI TCGA 4 cut(s) 82, 110, 264, 579
TasI AATT 3 cut(s) 373, 453, 749
TatI WGTACW 1 cut(s) 504
TauI GCSGC 3 cut(s) 14, 131, 413
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 3 cut(s) 402, 512, 621
Tru9I TTAA 3 cut(s) 402, 512, 621
TscAI CASTG 4 cut(s) 294, 542, 634, 761
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 2 cut(s) 48, 326
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 4 cut(s) 226, 600, 705, 723
TspRI CASTG 4 cut(s) 294, 542, 634, 761
XapI RAATTY 1 cut(s) 749
XceI RCATGY 3 cut(s) 93, 465, 469
XhoI CTCGAG 1 cut(s) 81
XspI CTAG 1 cut(s) 743
Zsp2I ATGCAT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.