Rh3DG012900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000189
Physical Location & Seq
Forward (+)
755065 .. 757049
1985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG012900.1

Sequence Viewer

Length: 846 bp
ATGCAGCAGAGGCAGCTGGACTTGCAAGCTTTGCCGGAAGGATGCATAGCCAACGTGATCTCGTTGACCAGTCCTCCAGATGCATGCAGGCTCTCTCTGCTTTCTAAGATTATCAGGTCGGCGGCAGAATCAGACTCCGTTTGGGATAAATTCATTCCGCCCGAGACACAAACGATCCTATCCCAGCCAAATTCCCTCTCTTTCCCTTCCAAATCCAAGAAGGACCTCTACATGGCTCTCTGCGACAATCCCGTCCTGATCGACGAGGGCAATATGAGCTTTTCATTGGACAAATGGAGTGGTAAGAAATGTTATATGATGGCTTCAAAGGGACTTCGGATTGCTTGGGGTGATACTCCTCGATATTGGGAATGGATTTCTCTGCCCGAGTCCAGGTTTGAAGAGGTTGCTAAGCTTCGGGTGGTTGGTTGGTTTGAAATTCGTGGGAGAATTGCTGCTCGCATACTTTCTCCATCCACTCTATATAAAGCTTATCTTGTGTACAAGTTTAATGAACGCCCATGGACATTTGACGACCATCCCACGGCGGTGGCCGTTTCTGCAAGGTCTTATGGCTTTGATTACGAATGCCCGAGTTTGAGTGAAATGGTTGAAGGAGGAGAGCTTAAGTACACTGCCTTTCTGGCGCAGCCGGAAAGAGAAATTAGTGAAGAGACTCGACTTCCAGACAAAAGGGCGGATGGCTGGTTGGAGATGGAGCTAGGTGAGTATTTCTGTGAAGGTGAGGAAGATGTGGAGTTGGAGATGATTTGTTGTGAGATTAATAGTAGCGGCAAGTGTGGCATCATTGTGCAAGGGATTGAGGTCAGACCCAAAAGCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

281

Amino Acids

31.9

Weight (kDa)

4.85

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 102 - 278 1.2e-44 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AciI CCGC 5 cut(s) 122, 158, 548, 698, 792
AclWI GGATC 1 cut(s) 169
AcoI YGGCCR 1 cut(s) 552
AcsI RAATTY 3 cut(s) 149, 190, 438
AfaI GTAC 2 cut(s) 503, 632
AfiI CCNNNNNNNGG 3 cut(s) 232, 393, 544
AflII CTTAAG 1 cut(s) 626
AgsI TTSAA 4 cut(s) 327, 401, 437, 614
AjnI CCWGG 1 cut(s) 392
AleI CACNNNNGTG 1 cut(s) 548
AluBI AGCT 7 cut(s) 16, 29, 279, 415, 491, 625, 721
AluI AGCT 7 cut(s) 16, 29, 279, 415, 491, 625, 721
Alw26I GTCTC 2 cut(s) 158, 668
AlwI GGATC 1 cut(s) 169
Ama87I CYCGRG 3 cut(s) 161, 386, 592
AoxI GGCC 1 cut(s) 552
ApeKI GCWGC 4 cut(s) 4, 13, 455, 649
ApoI RAATTY 3 cut(s) 149, 190, 438
AseI ATTAAT 1 cut(s) 783
AspLEI GCGC 1 cut(s) 649
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 3 cut(s) 362, 737, 755
AvaI CYCGRG 3 cut(s) 161, 386, 592
AvaII GGWCC 1 cut(s) 223
BarI GAAGNNNNNNTAC 2 cut(s) 212, 244
BbvI GCAGC 4 cut(s) 16, 25, 442, 661
BccI CCATC 5 cut(s) 313, 481, 546, 695, 709
BceAI ACGGC 2 cut(s) 539, 561
BciT130I CCWGG 1 cut(s) 394
BcoDI GTCTC 2 cut(s) 158, 668
BfaI CTAG 2 cut(s) 722, 844
BfrI CTTAAG 1 cut(s) 626
BglI GCCNNNNNGGC 1 cut(s) 644
BisI GCNGC 6 cut(s) 5, 14, 123, 456, 650, 793
BlpI GCTNAGC 1 cut(s) 411
BlsI GCNGC 6 cut(s) 6, 15, 124, 457, 651, 794
Bme1390I CCNGG 1 cut(s) 394
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 3 cut(s) 161, 386, 592
BmgT120I GGNCC 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 394
BmsI GCATC 3 cut(s) 32, 70, 813
BpmI CTGGAG 1 cut(s) 60
Bpu1102I GCTNAGC 1 cut(s) 411
BsaJI CCNNGG 2 cut(s) 521, 543
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 393, 544
Bse1I ACTGG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 394
BseDI CCNNGG 2 cut(s) 521, 543
BseGI GGATG 4 cut(s) 47, 473, 538, 706
BseLI CCNNNNNNNGG 3 cut(s) 232, 393, 544
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 2 cut(s) 348, 633
BseXI GCAGC 4 cut(s) 16, 25, 442, 661
BseYI CCCAGC 1 cut(s) 183
BshFI GGCC 1 cut(s) 554
BsiHKCI CYCGRG 3 cut(s) 161, 386, 592
BsiSI CCGG 2 cut(s) 35, 653
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 3 cut(s) 232, 393, 544
BsmAI GTCTC 2 cut(s) 158, 668
BsmFI GGGAC 1 cut(s) 345
BsmI GAATGC 1 cut(s) 593
BsnI GGCC 1 cut(s) 554
BsoBI CYCGRG 3 cut(s) 161, 386, 592
Bsp1407I TGTACA 1 cut(s) 501
Bsp143I GATC 3 cut(s) 57, 174, 258
Bsp1720I GCTNAGC 1 cut(s) 411
Bsp19I CCATGG 1 cut(s) 521
BspACI CCGC 5 cut(s) 122, 158, 548, 698, 792
BspANI GGCC 1 cut(s) 554
BspPI GGATC 1 cut(s) 169
BspTI CTTAAG 1 cut(s) 626
BsrGI TGTACA 1 cut(s) 501
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 2 cut(s) 521, 543
BssMI GATC 3 cut(s) 57, 174, 258
BssT1I CCWWGG 1 cut(s) 521
Bst2UI CCWGG 1 cut(s) 394
Bst6I CTCTTC 2 cut(s) 396, 666
BstAFI CTTAAG 1 cut(s) 626
BstAPI GCANNNNNTGC 1 cut(s) 31
BstAUI TGTACA 1 cut(s) 501
BstC8I GCNNGC 4 cut(s) 27, 85, 89, 460
BstDEI CTNAG 2 cut(s) 105, 411
BstDSI CCRYGG 2 cut(s) 521, 543
BstF5I GGATG 4 cut(s) 47, 473, 538, 706
BstHHI GCGC 1 cut(s) 649
BstKTI GATC 3 cut(s) 60, 177, 261
BstMAI GTCTC 2 cut(s) 158, 668
BstMBI GATC 3 cut(s) 57, 174, 258
BstMWI GCNNNNNNNGC 9 cut(s) 10, 13, 22, 31, 97, 276, 560, 644, 801
BstNI CCWGG 1 cut(s) 394
BstNSI RCATGY 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 392
BstV1I GCAGC 4 cut(s) 16, 25, 442, 661
BstXI CCANNNNNNTGG 1 cut(s) 550
BsuRI GGCC 1 cut(s) 554
BtgI CCRYGG 2 cut(s) 521, 543
BtsCI GGATG 4 cut(s) 47, 473, 538, 706
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 1 cut(s) 633
Cac8I GCNNGC 4 cut(s) 27, 85, 89, 460
CfoI GCGC 1 cut(s) 649
Cfr13I GGNCC 1 cut(s) 223
Csp6I GTAC 2 cut(s) 502, 631
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviAII CATG 3 cut(s) 84, 232, 522
CviQI GTAC 2 cut(s) 502, 631
DdeI CTNAG 2 cut(s) 105, 411
DpnI GATC 3 cut(s) 59, 176, 260
DpnII GATC 3 cut(s) 57, 174, 258
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 1 cut(s) 552
Eam1104I CTCTTC 2 cut(s) 396, 666
EarI CTCTTC 2 cut(s) 396, 666
EciI GGCGGA 2 cut(s) 147, 713
Eco130I CCWWGG 1 cut(s) 521
Eco47I GGWCC 1 cut(s) 223
Eco88I CYCGRG 3 cut(s) 161, 386, 592
EcoO109I RGGNCCY 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 392
EcoT14I CCWWGG 1 cut(s) 521
EcoT22I ATGCAT 2 cut(s) 47, 85
ErhI CCWWGG 1 cut(s) 521
FaeI CATG 3 cut(s) 87, 235, 525
FalI AAGNNNNNCTT 2 cut(s) 480, 512
FaqI GGGAC 1 cut(s) 345
FatI CATG 3 cut(s) 83, 231, 521
Fnu4HI GCNGC 6 cut(s) 5, 14, 123, 456, 650, 793
FokI GGATG 4 cut(s) 54, 460, 525, 713
Fsp4HI GCNGC 6 cut(s) 5, 14, 123, 456, 650, 793
FspBI CTAG 2 cut(s) 722, 844
GlaI GCGC 1 cut(s) 648
GluI GCNGC 6 cut(s) 5, 14, 123, 456, 650, 793
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 1 cut(s) 554
HapII CCGG 2 cut(s) 35, 653
HhaI GCGC 1 cut(s) 649
Hin1II CATG 3 cut(s) 87, 235, 525
Hin6I GCGC 1 cut(s) 647
HinP1I GCGC 1 cut(s) 647
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HindIII AAGCTT 3 cut(s) 27, 413, 489
HinfI GANTC 4 cut(s) 128, 134, 389, 676
HpaII CCGG 2 cut(s) 35, 653
HphI GGTGA 3 cut(s) 362, 737, 755
Hpy166II GTNNAC 3 cut(s) 66, 502, 633
Hpy188I TCNGA 3 cut(s) 133, 339, 830
Hpy188III TCNNGA 3 cut(s) 77, 256, 686
Hpy8I GTNNAC 3 cut(s) 66, 502, 633
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 5 cut(s) 32, 214, 216, 608, 734
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 7 cut(s) 4, 25, 45, 83, 87, 563, 814
HpyF10VI GCNNNNNNNGC 9 cut(s) 10, 13, 22, 31, 97, 276, 560, 644, 801
HpyF3I CTNAG 2 cut(s) 105, 411
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 3 cut(s) 87, 235, 525
HspAI GCGC 1 cut(s) 647
Kzo9I GATC 3 cut(s) 57, 174, 258
LmnI GCTCC 1 cut(s) 718
Lsp1109I GCAGC 4 cut(s) 16, 25, 442, 661
LweI GCATC 3 cut(s) 32, 70, 813
MaeI CTAG 2 cut(s) 722, 844
MaeII ACGT 1 cut(s) 54
MalI GATC 3 cut(s) 59, 176, 260
MboI GATC 3 cut(s) 57, 174, 258
MboII GAAGA 3 cut(s) 413, 683, 761
MluCI AATT 5 cut(s) 149, 190, 438, 450, 663
MlyI GAGTC 3 cut(s) 128, 398, 670
MmeI TCCRAC 2 cut(s) 690, 741
Mph1103I ATGCAT 2 cut(s) 47, 85
MseI TTAA 3 cut(s) 510, 627, 783
MslI CAYNNNNRTG 2 cut(s) 548, 809
MspA1I CMGCKG 1 cut(s) 16
MspCI CTTAAG 1 cut(s) 626
MspI CCGG 2 cut(s) 35, 653
MspR9I CCNGG 1 cut(s) 394
Mva1269I GAATGC 1 cut(s) 593
MvaI CCWGG 1 cut(s) 394
MwoI GCNNNNNNNGC 9 cut(s) 10, 13, 22, 31, 97, 276, 560, 644, 801
NcoI CCATGG 1 cut(s) 521
NdeII GATC 3 cut(s) 57, 174, 258
NlaIII CATG 3 cut(s) 87, 235, 525
NsiI ATGCAT 2 cut(s) 47, 85
NspI RCATGY 1 cut(s) 87
OliI CACNNNNGTG 1 cut(s) 548
PaeI GCATGC 1 cut(s) 87
PctI GAATGC 1 cut(s) 593
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 6 cut(s) 6, 15, 124, 457, 651, 794
PleI GAGTC 3 cut(s) 128, 397, 670
PpsI GAGTC 3 cut(s) 128, 397, 670
PpuMI RGGWCCY 1 cut(s) 223
PshBI ATTAAT 1 cut(s) 783
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 392
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 1 cut(s) 392
PspPI GGNCC 1 cut(s) 223
PspPPI RGGWCCY 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 16
RsaI GTAC 2 cut(s) 503, 632
RsaNI GTAC 2 cut(s) 502, 631
RseI CAYNNNNRTG 2 cut(s) 548, 809
SaqAI TTAA 3 cut(s) 510, 627, 783
SatI GCNGC 6 cut(s) 5, 14, 123, 456, 650, 793
Sau3AI GATC 3 cut(s) 57, 174, 258
Sau96I GGNCC 1 cut(s) 223
SchI GAGTC 3 cut(s) 128, 398, 670
ScrFI CCNGG 1 cut(s) 394
SfaNI GCATC 3 cut(s) 32, 70, 813
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 2 cut(s) 548, 809
SmlI CTYRAG 1 cut(s) 626
SmoI CTYRAG 1 cut(s) 626
SphI GCATGC 1 cut(s) 87
Sse9I AATT 5 cut(s) 149, 190, 438, 450, 663
SsiI CCGC 5 cut(s) 122, 158, 548, 698, 792
SspMI CTAG 2 cut(s) 722, 844
StyD4I CCNGG 1 cut(s) 392
StyI CCWWGG 1 cut(s) 521
TaiI ACGT 1 cut(s) 57
TaqI TCGA 3 cut(s) 261, 361, 679
TasI AATT 5 cut(s) 149, 190, 438, 450, 663
TatI WGTACW 2 cut(s) 501, 630
TauI GCSGC 2 cut(s) 125, 795
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 3 cut(s) 510, 627, 783
Tru9I TTAA 3 cut(s) 510, 627, 783
TscAI CASTG 1 cut(s) 640
TseI GCWGC 4 cut(s) 4, 13, 455, 649
TspDTI ATGAA 3 cut(s) 142, 273, 528
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 1 cut(s) 640
Vha464I CTTAAG 1 cut(s) 626
VpaK11BI GGWCC 1 cut(s) 223
VspI ATTAAT 1 cut(s) 783
XapI RAATTY 3 cut(s) 149, 190, 438
XceI RCATGY 1 cut(s) 87
XspI CTAG 2 cut(s) 722, 844
Zsp2I ATGCAT 2 cut(s) 47, 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.