Rorug02G0004900

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000189
Physical Location & Seq
Reverse (-)
515828 .. 520548
4721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0004900.1

Sequence Viewer

Length: 2754 bp
ATGGCAGCTCTCAGTACTCTCACTCTGATGATCATCTTCCTCCTCCGCTTCACCACCGCCACTTGTCACCGCCACCTCCTCCACCAGCCCTTCTTCCCAGTTGAATCAAACCCTCCAACCCAATCACCATCTTCCTCTCCTCCCCACCCCTCTCAAATTCCCAAAATGCCCTTCTCCTCCGCCTCCTCCTCCTCCTCAACACCCCCTGATAATAACAAACCGTTCTTTCCCTCCATCAAGCCCACGCCGCCTCCTCCCTCCCCAACAGCCCTCACCTCCTTCCCCGCCAACATTTCCTCCATCCTTTTCCCCCAACCCTCTTCCTCCTCCCCCCACCGCCACGTCATCGCCATCGCCGTCTCTGTCTCCGTCACCGCTGCACTCATCATCGCCTTCGCCGCTACCTTTTTACTCTACCGCCGCCGCCGGAAGCTCGACCCGACCTCGGCCGACGACAAGGCCTCCAGAACCGACAGCCTCCGCCTGTTCCCGCCCAACACCGTCGCCTCCGACGGAGTTCACAAGCAGCGTACTACGCCCAACAGAACCACCGAGAACTTCCTCTACCTCGGCACATTATCCACCGCTCAAGGAAACGACGAACAAAGCGTCGCCACCACGAGCAATGCCAGCTCGAAGTTCGGGGTTTCAAGCCGGTCTGGCTCGCCGTATCAGAAGCTGGGCTCGCCGGAGCTGACGCCGCTTCCTCCACTTCCCAAGGACAATTTCATACGACGGAGCTACAAGCATGAACTGGGTTCCGACGATGATGAAGGGGAAGAAGAGTTCTTTTCTCCGAGAGGGTCTTCTGCGAGTCCCAAAAACGTCGCCGGAGCAAGCTCAGACAGAGTGCTCAAGGCTGTAGAAGGCGACAACTTTGGAAGCAGGAGCTTCAATTCAAGAACTGCATCATACCCATGTTCAAAATCTGCTTCTCCAGTAAGTTCTGTGTCCAACACTGTCTCACCACAGTTGAACTTTAGTCCCACAAGCTTGAAATCGAACTCGCCGGACTCTGTGATCAATTTCATGGCACCGTCTCGGCCTGCTCCGATTCCGGTGGCAGTGTCCCGGTCATTGTCTTCGTCGTCTACTTTATCAGAGAGGGTTTCAGGGAATGTGCAGAGTTCCCCTGACTTTTTGACGCAGATGAAGCAGTCTCTAGTGAGAAACAATAGTGCTCCTAAGCGGTTTGTTCCAATAAGACTGCCTCCGCCGCCTCCTCCACCGCCACCACCCAGGTATTGGGAAGCTTCAGAGACTCCGGTGGCGAATGCAGGTCCACCCGTTCTTGTCACGCCTTCCAGTGCTCGTGTGTATCAGAATTATATGGGACCAGTTTTGGCTGGTGAACCATCACAGAAGAATGACATTGAGGAAAAAAGCGAGGAAACTCCTAGGCCAAAGTTGAAGCCTTTACATTGGGACAAAGTTAGGGCCAGCTCAGACCGCGCTATGGTGTGGGATCAGTTAAAATCGAGCTCCTTTCAGTTGAATGAGGAAATGATCGAGGCACTTTTTGTGGTAAACAATTCAAGTTTGACACCGAAAGAAAATGCTCGGCGACAGATTCTACCCTCTTTGAATCAGGAGAACCGTGTGCTGGATCCAAAGAAGTCTCAGAATATTGCAATTTTGTTGAGGGCGCTTAATGTTACCATTGATGAAGTCTGTGAGGCCCTCTTGGAAGGTAATTCGGATTCTCTCGGAACGGAACTTCTTGAAAGTTTATTAAAGATGGCTCCAACCAAAGAGGAAGAATGGAAGCTAAAAGAGTTCAAAGATGAATCACCATTTAAGCTTGGCCCAGCTGAGAAATTTCTGAAGGCAGTGCTTGATGTACCTTATGCATTTAAGAGGGTGGATGCAATGCTGTACATTGCCAATTTTGATTCAGAAGTAGACTATCTTAAAAGGTCTTTTGAGACATTGGAGGCAGCTTGTGAAGAATTGAAGAACAGCAGAATGTTCTTTAAGCTTCTTGAAGCAGTGCTCAAAACTGGGAACCGCATGAATGTCGGCACCAACCGTGGCGATGCTCATGCCTTCAAGCTCGACACACTCCTGAAGCTGGTAGATGTGAAGGGCGCTGATGGAAAAACTACTCTGTTGCATTTTGTAGTACAGGAGATCATCAGAGCTGAAGGTTCTCGTCTTTCGGGCGTGAATCAGGATGAAACGGCTGAGAGCAGTCAACAATCTTCTTTCCGGGATGATGTGGAGTTTAGGAAGCGTGGCCTGCAAGTTGTTTCAGGATTGAGTGGAGAGCTCATCAATGTAAAGAAAGCTGCTGGTATGGATTCGGATGTACTGAGCAACGAAGTAGCAAAGATTGCTGGGGGAATTACAAAAATTGAAGAAGTTGTAAAATTAATTGAAGGAAGTGCATTGAAGGAGAGTAGCCAGAAGTTCTTCGACTCCATGAATGGGTTCTTGAAGAAGGCAAGTGAAGAGATTGTGATGATTCAAGCCCGAGAGAAACTTGCATTCTGTATGGTGAAGGAAATAACAGAATATTTCCATGGGAACTCGGCTAAAGAAGAAGCTCATCCTTTCCGGATTTTCACGGTGGTGAGAGACTTCCTTTCAATTCTAGATCAGGCATGCAAGGTAGTTGGCAAAGTTAATGAAAGAACTATAGTTGGGTCTGCCCGTCAATTTCCAATTGTCATGAATCCAACCGTTCCACCAGTTTTTCCTGGACCAAGTACAAAGCAGCATTATGGTTCCTCGGATGATGAAACCTTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

917

Amino Acids

100.45

Weight (kDa)

8.56

Isoelectric Point (pI)

59.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FH2 PF02181 461 - 865 7.3e-115 Formin Homology 2 Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1268
AccB1I GGYRCC 2 cut(s) 1033, 2021
AccB7I CCANNNNNTGG 1 cut(s) 1245
AccBSI CCGCTC 1 cut(s) 587
AccI GTMKAC 2 cut(s) 1091, 1902
AccII CGCG 1 cut(s) 1452
AccIII TCCGGA 1 cut(s) 2556
AclWI GGATC 3 cut(s) 1473, 1601, 1614
AcoI YGGCCR 1 cut(s) 447
AcsI RAATTY 2 cut(s) 156, 1817
AcuI CTGAAG 4 cut(s) 1239, 1844, 2087, 2163
AcyI GRCGYC 1 cut(s) 698
AfaI GTAC 7 cut(s) 16, 532, 1842, 1877, 2124, 2310, 2710
AfiI CCNNNNNNNGG 6 cut(s) 445, 1245, 1456, 1603, 2071, 2427
AjiI CACGTC 1 cut(s) 343
AjnI CCWGG 2 cut(s) 1238, 2698
AjuI GAANNNNNNNTTGG 4 cut(s) 155, 187, 710, 742
AleI CACNNNNGTG 1 cut(s) 2570
AloI GAACNNNNNNTCC 2 cut(s) 770, 802
Alw21I GWGCWC 6 cut(s) 855, 1183, 1312, 1484, 1995, 2271
Alw26I GTCTC 9 cut(s) 364, 370, 967, 1044, 1164, 1253, 1623, 1919, 2571
AlwI GGATC 3 cut(s) 1473, 1601, 1614
AlwNI CAGNNNCTG 1 cut(s) 679
Ama87I CYCGRG 1 cut(s) 2472
Aor13HI TCCGGA 1 cut(s) 2556
AoxI GGCC 8 cut(s) 447, 459, 1043, 1400, 1437, 1677, 1804, 2236
ApeKI GCWGC 6 cut(s) 5, 377, 526, 1937, 2288, 2716
ApoI RAATTY 2 cut(s) 156, 1817
ArsI GACNNNNNNTTYG 2 cut(s) 594, 626
AseI ATTAAT 1 cut(s) 2372
Asp700I GAANNNNTTC 2 cut(s) 2411, 2429
AspA2I CCTAGG 1 cut(s) 1397
AspLEI GCGC 3 cut(s) 1454, 1648, 2090
AspS9I GGNCC 6 cut(s) 1280, 1334, 1437, 1678, 1805, 2702
AsuC2I CCSGG 2 cut(s) 1072, 2210
AvaI CYCGRG 1 cut(s) 2472
AvaII GGWCC 3 cut(s) 1280, 1334, 2702
AvrII CCTAGG 1 cut(s) 1397
BamHI GGATCC 1 cut(s) 1606
BanI GGYRCC 2 cut(s) 1033, 2021
BanII GRGCYC 3 cut(s) 686, 1484, 2271
BauI CACGAG 2 cut(s) 619, 1311
BbsI GAAGAC 2 cut(s) 798, 1074
Bbv12I GWGCWC 6 cut(s) 855, 1183, 1312, 1484, 1995, 2271
BbvI GCAGC 6 cut(s) 17, 364, 538, 1949, 2275, 2728
BccI CCATC 7 cut(s) 136, 242, 308, 359, 1363, 1732, 2087
BceAI ACGGC 3 cut(s) 341, 652, 2196
BcgI CGANNNNNNTGC 4 cut(s) 1999, 2024, 2033, 2058
BciT130I CCWGG 2 cut(s) 1240, 2700
BclI TGATCA 2 cut(s) 30, 1020
BcnI CCSGG 2 cut(s) 1072, 2210
BcoDI GTCTC 9 cut(s) 364, 370, 967, 1044, 1164, 1253, 1623, 1919, 2571
BfaI CTAG 3 cut(s) 1163, 1398, 2594
BfmI CTRYAG 2 cut(s) 861, 2637
BfoI RGCGCY 2 cut(s) 1649, 2091
BfuAI ACCTGC 1 cut(s) 1268
BglI GCCNNNNNGGC 1 cut(s) 660
BlnI CCTAGG 1 cut(s) 1397
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 4 cut(s) 1072, 1240, 2210, 2700
Bme18I GGWCC 3 cut(s) 1280, 1334, 2702
BmeT110I CYCGRG 1 cut(s) 2472
BmgBI CACGTC 1 cut(s) 343
BmgT120I GGNCC 6 cut(s) 1280, 1334, 1437, 1678, 1805, 2702
BmiI GGNNCC 8 cut(s) 760, 1035, 1335, 1608, 1743, 2006, 2023, 2728
BmrFI CCNGG 4 cut(s) 1072, 1240, 2210, 2700
BmrI ACTGGG 3 cut(s) 92, 764, 2010
BmsI GCATC 3 cut(s) 917, 1855, 2026
BmuI ACTGGG 3 cut(s) 92, 764, 2010
BpiI GAAGAC 2 cut(s) 798, 1074
BpmI CTGGAG 2 cut(s) 448, 921
Bpu10I CCTNAGC 1 cut(s) 1185
BpuEI CTTGAG 2 cut(s) 573, 839
BpuMI CCSGG 2 cut(s) 1072, 2210
BsaBI GATNNNNATC 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 698
BsaJI CCNNGG 8 cut(s) 444, 568, 717, 1238, 1397, 2029, 2521, 2730
BsaWI WCCGGW 3 cut(s) 1057, 1264, 2556
BsaXI ACNNNNNCTCC 6 cut(s) 235, 265, 281, 311, 446, 476
Bsc4I CCNNNNNNNGG 6 cut(s) 445, 1245, 1456, 1603, 2071, 2427
Bse118I RCCGGY 1 cut(s) 654
Bse1I ACTGG 7 cut(s) 98, 759, 938, 1305, 1337, 2005, 2690
Bse3DI GCAATG 3 cut(s) 631, 1875, 1878
Bse8I GATNNNNATC 1 cut(s) 32
BseAI TCCGGA 1 cut(s) 2556
BseBI CCWGG 2 cut(s) 1240, 2700
BseDI CCNNGG 8 cut(s) 444, 568, 717, 1238, 1397, 2029, 2521, 2730
BseGI GGATG 7 cut(s) 300, 1870, 2179, 2218, 2311, 2548, 2740
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 6 cut(s) 445, 1245, 1456, 1603, 2071, 2427
BseMI GCAATG 3 cut(s) 631, 1875, 1878
BseMII CTCAG 7 cut(s) 25, 855, 1458, 1634, 1803, 2175, 2303
BseNI ACTGG 7 cut(s) 98, 759, 938, 1305, 1337, 2005, 2690
BseX3I CGGCCG 1 cut(s) 447
BseXI GCAGC 6 cut(s) 17, 364, 538, 1949, 2275, 2728
BseYI CCCAGC 3 cut(s) 679, 1807, 2336
BsgI GTGCAG 2 cut(s) 363, 1142
Bsh1236I CGCG 1 cut(s) 1452
Bsh1285I CGRYCG 1 cut(s) 450
BshFI GGCC 8 cut(s) 449, 461, 1045, 1402, 1439, 1679, 1806, 2238
BshNI GGYRCC 2 cut(s) 1033, 2021
BsiEI CGRYCG 1 cut(s) 450
BsiHKAI GWGCWC 6 cut(s) 855, 1183, 1312, 1484, 1995, 2271
BsiHKCI CYCGRG 1 cut(s) 2472
BslFI GGGAC 5 cut(s) 801, 969, 1054, 1347, 1439
BslI CCNNNNNNNGG 6 cut(s) 445, 1245, 1456, 1603, 2071, 2427
BsmAI GTCTC 9 cut(s) 364, 370, 967, 1044, 1164, 1253, 1623, 1919, 2571
BsmBI CGTCTC 2 cut(s) 364, 1044
BsmFI GGGAC 5 cut(s) 801, 969, 1054, 1347, 1439
BsmI GAATGC 2 cut(s) 1279, 2486
BsnI GGCC 8 cut(s) 449, 461, 1045, 1402, 1439, 1679, 1806, 2238
BsoBI CYCGRG 1 cut(s) 2472
Bsp1286I GDGCHC 7 cut(s) 686, 855, 1183, 1312, 1484, 1995, 2271
Bsp13I TCCGGA 1 cut(s) 2556
Bsp1407I TGTACA 1 cut(s) 1875
Bsp143I GATC 7 cut(s) 30, 1020, 1465, 1506, 1606, 2130, 2596
Bsp19I CCATGG 1 cut(s) 2521
BspANI GGCC 8 cut(s) 449, 461, 1045, 1402, 1439, 1679, 1806, 2238
BspCNI CTCAG 7 cut(s) 24, 854, 1457, 1633, 1804, 2176, 2304
BspEI TCCGGA 1 cut(s) 2556
BspFNI CGCG 1 cut(s) 1452
BspHI TCATGA 1 cut(s) 2670
BspLI GGNNCC 8 cut(s) 760, 1035, 1335, 1608, 1743, 2006, 2023, 2728
BspMI ACCTGC 1 cut(s) 1268
BspPI GGATC 3 cut(s) 1473, 1601, 1614
BspT107I GGYRCC 2 cut(s) 1033, 2021
BsrBI CCGCTC 1 cut(s) 587
BsrDI GCAATG 3 cut(s) 631, 1875, 1878
BsrFI RCCGGY 1 cut(s) 654
BsrGI TGTACA 1 cut(s) 1875
BsrI ACTGG 7 cut(s) 98, 759, 938, 1305, 1337, 2005, 2690
BssAI RCCGGY 1 cut(s) 654
BssECI CCNNGG 8 cut(s) 444, 568, 717, 1238, 1397, 2029, 2521, 2730
BssMI GATC 7 cut(s) 30, 1020, 1465, 1506, 1606, 2130, 2596
BssNI GRCGYC 1 cut(s) 698
BssSI CACGAG 2 cut(s) 619, 1311
BssT1I CCWWGG 3 cut(s) 717, 1397, 2521
Bst2BI CACGAG 2 cut(s) 619, 1311
Bst2UI CCWGG 2 cut(s) 1240, 2700
Bst4CI ACNGT 9 cut(s) 222, 502, 961, 972, 1038, 1598, 2030, 2569, 2683
Bst6I CTCTTC 3 cut(s) 325, 777, 2445
BstACI GRCGYC 1 cut(s) 698
BstAPI GCANNNNNTGC 1 cut(s) 2333
BstAUI TGTACA 1 cut(s) 1875
BstC8I GCNNGC 8 cut(s) 631, 665, 686, 838, 1047, 1441, 2240, 2605
BstDEI CTNAG 8 cut(s) 11, 841, 1185, 1444, 1620, 1812, 2184, 2312
BstDSI CCRYGG 2 cut(s) 2029, 2521
BstF5I GGATG 7 cut(s) 300, 1870, 2179, 2218, 2311, 2548, 2740
BstFNI CGCG 1 cut(s) 1452
BstH2I RGCGCY 2 cut(s) 1649, 2091
BstHHI GCGC 3 cut(s) 1454, 1648, 2090
BstKTI GATC 7 cut(s) 33, 1023, 1468, 1509, 1609, 2133, 2599
BstMAI GTCTC 9 cut(s) 364, 370, 967, 1044, 1164, 1253, 1623, 1919, 2571
BstMBI GATC 7 cut(s) 30, 1020, 1465, 1506, 1606, 2130, 2596
BstMCI CGRYCG 1 cut(s) 450
BstNI CCWGG 2 cut(s) 1240, 2700
BstNSI RCATGY 1 cut(s) 2607
BstSCI CCNGG 4 cut(s) 1070, 1238, 2208, 2698
BstSFI CTRYAG 2 cut(s) 861, 2637
BstUI CGCG 1 cut(s) 1452
BstV1I GCAGC 6 cut(s) 17, 364, 538, 1949, 2275, 2728
BstV2I GAAGAC 2 cut(s) 798, 1074
BstX2I RGATCY 1 cut(s) 1606
BstYI RGATCY 1 cut(s) 1606
BstZI CGGCCG 1 cut(s) 447
BsuRI GGCC 8 cut(s) 449, 461, 1045, 1402, 1439, 1679, 1806, 2238
BtgI CCRYGG 2 cut(s) 2029, 2521
BtgZI GCGATG 4 cut(s) 331, 337, 373, 2049
BtrI CACGTC 1 cut(s) 343
BtsCI GGATG 7 cut(s) 300, 1870, 2179, 2218, 2311, 2548, 2740
BtsI GCAGTG 3 cut(s) 1071, 1836, 1995
BtsIMutI CAGTG 5 cut(s) 957, 1071, 1312, 1836, 1995
BveI ACCTGC 1 cut(s) 1268
Cac8I GCNNGC 8 cut(s) 631, 665, 686, 838, 1047, 1441, 2240, 2605
CaiI CAGNNNCTG 1 cut(s) 679
CciI TCATGA 1 cut(s) 2670
CfoI GCGC 3 cut(s) 1454, 1648, 2090
Cfr10I RCCGGY 1 cut(s) 654
Cfr13I GGNCC 6 cut(s) 1280, 1334, 1437, 1678, 1805, 2702
CseI GACGC 3 cut(s) 598, 706, 1153
Csp6I GTAC 7 cut(s) 15, 531, 1841, 1876, 2123, 2309, 2709
CviAII CATG 9 cut(s) 749, 918, 1030, 2011, 2042, 2422, 2522, 2604, 2671
CviQI GTAC 7 cut(s) 15, 531, 1841, 1876, 2123, 2309, 2709
DdeI CTNAG 8 cut(s) 11, 841, 1185, 1444, 1620, 1812, 2184, 2312
DpnI GATC 7 cut(s) 32, 1022, 1467, 1508, 1608, 2132, 2598
DpnII GATC 7 cut(s) 30, 1020, 1465, 1506, 1606, 2130, 2596
EaeI YGGCCR 1 cut(s) 447
EagI CGGCCG 1 cut(s) 447
Eam1104I CTCTTC 3 cut(s) 325, 777, 2445
EarI CTCTTC 3 cut(s) 325, 777, 2445
EciI GGCGGA 3 cut(s) 169, 470, 1203
Ecl136II GAGCTC 2 cut(s) 1482, 2269
EclXI CGGCCG 1 cut(s) 447
Eco130I CCWWGG 3 cut(s) 717, 1397, 2521
Eco147I AGGCCT 1 cut(s) 461
Eco24I GRGCYC 3 cut(s) 686, 1484, 2271
Eco47I GGWCC 3 cut(s) 1280, 1334, 2702
Eco52I CGGCCG 1 cut(s) 447
Eco53kI GAGCTC 2 cut(s) 1482, 2269
Eco57I CTGAAG 4 cut(s) 1239, 1844, 2087, 2163
Eco88I CYCGRG 1 cut(s) 2472
EcoICRI GAGCTC 2 cut(s) 1482, 2269
EcoO109I RGGNCCY 1 cut(s) 1678
EcoRII CCWGG 2 cut(s) 1238, 2698
EcoT14I CCWWGG 3 cut(s) 717, 1397, 2521
EcoT22I ATGCAT 1 cut(s) 1852
EcoT38I GRGCYC 3 cut(s) 686, 1484, 2271
ErhI CCWWGG 3 cut(s) 717, 1397, 2521
Esp3I CGTCTC 2 cut(s) 364, 1044
FaeI CATG 9 cut(s) 752, 921, 1033, 2014, 2045, 2425, 2525, 2607, 2674
FaqI GGGAC 5 cut(s) 801, 969, 1054, 1347, 1439
FatI CATG 9 cut(s) 748, 917, 1029, 2010, 2041, 2421, 2521, 2603, 2670
FauI CCCGC 2 cut(s) 292, 498
FbaI TGATCA 2 cut(s) 30, 1020
FblI GTMKAC 2 cut(s) 1091, 1902
FokI GGATG 7 cut(s) 287, 1877, 2186, 2225, 2318, 2535, 2747
FriOI GRGCYC 3 cut(s) 686, 1484, 2271
FspBI CTAG 3 cut(s) 1163, 1398, 2594
GlaI GCGC 3 cut(s) 1453, 1647, 2089
GsaI CCCAGC 3 cut(s) 683, 1811, 2340
GsuI CTGGAG 2 cut(s) 448, 921
HaeII RGCGCY 2 cut(s) 1649, 2091
HaeIII GGCC 8 cut(s) 449, 461, 1045, 1402, 1439, 1679, 1806, 2238
HgaI GACGC 3 cut(s) 598, 706, 1153
HhaI GCGC 3 cut(s) 1454, 1648, 2090
Hin1I GRCGYC 1 cut(s) 698
Hin1II CATG 9 cut(s) 752, 921, 1033, 2014, 2045, 2425, 2525, 2607, 2674
Hin6I GCGC 3 cut(s) 1452, 1646, 2088
HinP1I GCGC 3 cut(s) 1452, 1646, 2088
HincII GTYRAC 1 cut(s) 2195
HindII GTYRAC 1 cut(s) 2195
HindIII AAGCTT 4 cut(s) 991, 1251, 1799, 1976
Hpy166II GTNNAC 7 cut(s) 520, 1092, 1283, 1352, 1528, 1903, 2195
Hpy8I GTNNAC 7 cut(s) 520, 1092, 1283, 1352, 1528, 1903, 2195
Hpy99I CGWCG 9 cut(s) 455, 506, 515, 602, 614, 738, 767, 830, 1090
HpyCH4III ACNGT 9 cut(s) 222, 502, 961, 972, 1038, 1598, 2030, 2569, 2683
HpyCH4IV ACGT 2 cut(s) 342, 825
HpyF3I CTNAG 8 cut(s) 11, 841, 1185, 1444, 1620, 1812, 2184, 2312
HpySE526I ACGT 2 cut(s) 342, 825
Hsp92I GRCGYC 1 cut(s) 698
Hsp92II CATG 9 cut(s) 752, 921, 1033, 2014, 2045, 2425, 2525, 2607, 2674
HspAI GCGC 3 cut(s) 1452, 1646, 2088
Kpn2I TCCGGA 1 cut(s) 2556
Ksp22I TGATCA 2 cut(s) 30, 1020
Kzo9I GATC 7 cut(s) 30, 1020, 1465, 1506, 1606, 2130, 2596
LmnI GCTCC 8 cut(s) 691, 738, 833, 888, 1054, 1186, 1487, 1747
Lsp1109I GCAGC 6 cut(s) 17, 364, 538, 1949, 2275, 2728
LweI GCATC 3 cut(s) 917, 1855, 2026
MaeI CTAG 3 cut(s) 1163, 1398, 2594
MaeII ACGT 2 cut(s) 342, 825
MaeIII GTNAC 4 cut(s) 65, 370, 1294, 1654
MalI GATC 7 cut(s) 32, 1022, 1467, 1508, 1608, 2132, 2598
MbiI CCGCTC 1 cut(s) 587
MboI GATC 7 cut(s) 30, 1020, 1465, 1506, 1606, 2130, 2596
MfeI CAATTG 1 cut(s) 2664
MflI RGATCY 1 cut(s) 1606
MhlI GDGCHC 7 cut(s) 686, 855, 1183, 1312, 1484, 1995, 2271
MlyI GAGTC 4 cut(s) 823, 1007, 1255, 2411
MmeI TCCRAC 6 cut(s) 140, 534, 786, 978, 1769, 2702
Mph1103I ATGCAT 1 cut(s) 1852
MroI TCCGGA 1 cut(s) 2556
MroXI GAANNNNTTC 2 cut(s) 2411, 2429
MseI TTAA 9 cut(s) 1472, 1650, 1733, 1797, 1854, 1911, 1974, 2372, 2625
MslI CAYNNNNRTG 3 cut(s) 26, 916, 2570
MspA1I CMGCKG 2 cut(s) 377, 1811
MspR9I CCNGG 4 cut(s) 1072, 1240, 2210, 2700
MunI CAATTG 1 cut(s) 2664
Mva1269I GAATGC 2 cut(s) 1279, 2486
MvaI CCWGG 2 cut(s) 1240, 2700
MvnI CGCG 1 cut(s) 1452
NciI CCSGG 2 cut(s) 1072, 2210
NcoI CCATGG 1 cut(s) 2521
NdeII GATC 7 cut(s) 30, 1020, 1465, 1506, 1606, 2130, 2596
NlaIII CATG 9 cut(s) 752, 921, 1033, 2014, 2045, 2425, 2525, 2607, 2674
NlaIV GGNNCC 8 cut(s) 760, 1035, 1335, 1608, 1743, 2006, 2023, 2728
NmeAIII GCCGAG 5 cut(s) 425, 549, 1021, 1540, 2510
NmuCI GTSAC 3 cut(s) 65, 370, 1294
NsiI ATGCAT 1 cut(s) 1852
NspI RCATGY 1 cut(s) 2607
OliI CACNNNNGTG 1 cut(s) 2570
PaeI GCATGC 1 cut(s) 2607
PagI TCATGA 1 cut(s) 2670
PceI AGGCCT 1 cut(s) 461
PcsI WCGNNNNNNNCGW 2 cut(s) 354, 606
PctI GAATGC 2 cut(s) 1279, 2486
PdmI GAANNNNTTC 2 cut(s) 2411, 2429
PflMI CCANNNNNTGG 1 cut(s) 1245
PfoI TCCNGGA 2 cut(s) 2208, 2698
PleI GAGTC 4 cut(s) 822, 1007, 1255, 2411
PpsI GAGTC 4 cut(s) 822, 1007, 1255, 2411
PshBI ATTAAT 1 cut(s) 2372
Psp124BI GAGCTC 2 cut(s) 1484, 2271
Psp6I CCWGG 2 cut(s) 1238, 2698
PspFI CCCAGC 3 cut(s) 679, 1807, 2336
PspGI CCWGG 2 cut(s) 1238, 2698
PspN4I GGNNCC 8 cut(s) 760, 1035, 1335, 1608, 1743, 2006, 2023, 2728
PspPI GGNCC 6 cut(s) 1280, 1334, 1437, 1678, 1805, 2702
PsrI GAACNNNNNNTAC 2 cut(s) 548, 580
PstNI CAGNNNCTG 1 cut(s) 679
PsuI RGATCY 1 cut(s) 1606
PvuII CAGCTG 1 cut(s) 1811
RsaI GTAC 7 cut(s) 16, 532, 1842, 1877, 2124, 2310, 2710
RsaNI GTAC 7 cut(s) 15, 531, 1841, 1876, 2123, 2309, 2709
RseI CAYNNNNRTG 3 cut(s) 26, 916, 2570
SacI GAGCTC 2 cut(s) 1484, 2271
SaqAI TTAA 9 cut(s) 1472, 1650, 1733, 1797, 1854, 1911, 1974, 2372, 2625
Sau3AI GATC 7 cut(s) 30, 1020, 1465, 1506, 1606, 2130, 2596
Sau96I GGNCC 6 cut(s) 1280, 1334, 1437, 1678, 1805, 2702
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 4 cut(s) 823, 1007, 1255, 2411
ScrFI CCNGG 4 cut(s) 1072, 1240, 2210, 2700
SduI GDGCHC 7 cut(s) 686, 855, 1183, 1312, 1484, 1995, 2271
SfaNI GCATC 3 cut(s) 917, 1855, 2026
SfcI CTRYAG 2 cut(s) 861, 2637
SinI GGWCC 3 cut(s) 1280, 1334, 2702
SmiMI CAYNNNNRTG 3 cut(s) 26, 916, 2570
SmlI CTYRAG 2 cut(s) 588, 854
SmoI CTYRAG 2 cut(s) 588, 854
SphI GCATGC 1 cut(s) 2607
SseBI AGGCCT 1 cut(s) 461
SspI AATATT 2 cut(s) 1627, 2516
SspMI CTAG 3 cut(s) 1163, 1398, 2594
SstI GAGCTC 2 cut(s) 1484, 2271
StuI AGGCCT 1 cut(s) 461
StyD4I CCNGG 4 cut(s) 1070, 1238, 2208, 2698
StyI CCWWGG 3 cut(s) 717, 1397, 2521
TaaI ACNGT 9 cut(s) 222, 502, 961, 972, 1038, 1598, 2030, 2569, 2683
TaiI ACGT 2 cut(s) 345, 828
TaqI TCGA 7 cut(s) 435, 635, 1001, 1478, 1509, 2055, 2415
TatI WGTACW 5 cut(s) 14, 1875, 2122, 2308, 2708
TauI GCSGC 6 cut(s) 250, 401, 423, 426, 703, 1219
Tru1I TTAA 9 cut(s) 1472, 1650, 1733, 1797, 1854, 1911, 1974, 2372, 2625
Tru9I TTAA 9 cut(s) 1472, 1650, 1733, 1797, 1854, 1911, 1974, 2372, 2625
TscAI CASTG 5 cut(s) 964, 1071, 1312, 1836, 1995
TseFI GTSAC 3 cut(s) 65, 370, 1294
TseI GCWGC 6 cut(s) 5, 377, 526, 1937, 2288, 2716
Tsp45I GTSAC 3 cut(s) 65, 370, 1294
TspGWI ACGGA 4 cut(s) 358, 528, 751, 1727
TspRI CASTG 5 cut(s) 964, 1071, 1312, 1836, 1995
Van91I CCANNNNNTGG 1 cut(s) 1245
VpaK11BI GGWCC 3 cut(s) 1280, 1334, 2702
VspI ATTAAT 1 cut(s) 2372
XapI RAATTY 2 cut(s) 156, 1817
XbaI TCTAGA 1 cut(s) 2593
XceI RCATGY 1 cut(s) 2607
XcmI CCANNNNNNNNNTGG 1 cut(s) 1242
XmaJI CCTAGG 1 cut(s) 1397
XmiI GTMKAC 2 cut(s) 1091, 1902
XmnI GAANNNNTTC 2 cut(s) 2411, 2429
XspI CTAG 3 cut(s) 1163, 1398, 2594
ZrmI AGTACT 1 cut(s) 16
Zsp2I ATGCAT 1 cut(s) 1852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.