Rh3DG027200

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000189
Physical Location & Seq
Forward (+)
1823570 .. 1825264
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG027200.1

Sequence Viewer

Length: 636 bp
ATGGATTTGCTGCGGTTGCCGGAGGGTTGCATAGCCAACATCGTATCGTTGACGACTCCTGAAGATGCCTGCCGCCTGTCGTTGCTCTGTAAGATTTTCAAGTCAGCGGCGGAATCCGACTCCGTTTGGGACAGGTTCCTTCCGCCTGAGACACCCAAGATCCTGTCCGAGTCCGGCGAATCTGGATTATTGGCCGCCAAATCCAAGAAGGAGCTTTACCTCGCTCTCTGCGACAAACCTGTCCTCATCAACGACGGTAAATTGAGCTTTTCACTGGAGAAATGGAGTGGGAAAAAATGTTACATGATATCTGCAAAAGAGCTTGATATTGTCTGGAGCCATATTCCCCGGTTTTGGAGATGGACTTCTCATCCTGAATCCAGGGCCAATGGATTTGATCACCTACCTGCGGACGTCACTGTAGGTCTGGAGGGAGGAGAACAGAGTAAACAGACTCAGTTTCTTCACAACGAAGGGGAGAGATCTGGGTGGTTGGAGATTGAGCTGGGTGAGTTTTTTTGTGAAGGGGAAGAAGATGGGCTGTTGAAAATGCGTTGTGTGGCGAAGGAGGGTCTTAATTGGAAGAGCGGTCTTATTGTTCAAGGCATTGAGGTCAGGCCTAAGAGGAAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

211

Amino Acids

23.77

Weight (kDa)

5.69

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 44 4.7e-07 F-box domain
PP2 PF14299 98 - 129 8.3e-09 Phloem protein 2
PP2 PF14299 129 - 207 1.9e-14 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AatII GACGTC 1 cut(s) 417
Acc36I ACCTGC 1 cut(s) 415
AccBSI CCGCTC 1 cut(s) 588
AciI CCGC 8 cut(s) 13, 73, 107, 110, 143, 195, 410, 588
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 414
AfaI GTAC 1 cut(s) 632
AfiI CCNNNNNNNGG 2 cut(s) 354, 409
AgsI TTSAA 3 cut(s) 100, 547, 602
AjnI CCWGG 1 cut(s) 380
AluBI AGCT 4 cut(s) 214, 267, 322, 505
AluI AGCT 4 cut(s) 214, 267, 322, 505
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 1 cut(s) 154
AoxI GGCC 3 cut(s) 192, 384, 617
ApeKI GCWGC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 384
AsuC2I CCSGG 1 cut(s) 349
AsuHPI GGTGA 2 cut(s) 392, 521
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BccI CCATC 2 cut(s) 354, 530
BciT130I CCWGG 1 cut(s) 382
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 634
BfmI CTRYAG 1 cut(s) 420
BfuAI ACCTGC 1 cut(s) 415
BglII AGATCT 1 cut(s) 482
BisI GCNGC 4 cut(s) 11, 73, 108, 195
BlsI GCNGC 4 cut(s) 12, 74, 109, 196
BmcAI AGTACT 1 cut(s) 632
Bme1390I CCNGG 2 cut(s) 349, 382
BmgT120I GGNCC 1 cut(s) 384
BmiI GGNNCC 2 cut(s) 137, 338
BmrFI CCNGG 2 cut(s) 349, 382
BmsI GCATC 1 cut(s) 55
BpmI CTGGAG 3 cut(s) 296, 355, 449
BpuMI CCSGG 1 cut(s) 349
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 2 cut(s) 347, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 409
Bse1I ACTGG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 382
BseDI CCNNGG 2 cut(s) 347, 381
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 2 cut(s) 354, 409
BseMII CTCAG 2 cut(s) 138, 470
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 450
BseYI CCCAGC 1 cut(s) 505
BshFI GGCC 3 cut(s) 194, 386, 619
BsiSI CCGG 3 cut(s) 20, 174, 349
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 2 cut(s) 354, 409
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 3 cut(s) 194, 386, 619
Bsp143I GATC 3 cut(s) 159, 397, 482
BspACI CCGC 8 cut(s) 13, 73, 107, 110, 143, 195, 410, 588
BspANI GGCC 3 cut(s) 194, 386, 619
BspCNI CTCAG 2 cut(s) 139, 469
BspLI GGNNCC 2 cut(s) 137, 338
BspMI ACCTGC 1 cut(s) 415
BspPI GGATC 1 cut(s) 154
BspQI GCTCTTC 1 cut(s) 578
BsrBI CCGCTC 1 cut(s) 588
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 2 cut(s) 347, 381
BssMI GATC 3 cut(s) 159, 397, 482
BssNI GRCGYC 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 382
Bst4CI ACNGT 2 cut(s) 257, 421
Bst6I CTCTTC 1 cut(s) 578
BstACI GRCGYC 1 cut(s) 414
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 3 cut(s) 147, 456, 621
BstF5I GGATG 1 cut(s) 370
BstKTI GATC 3 cut(s) 162, 400, 485
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 3 cut(s) 159, 397, 482
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 1 cut(s) 382
BstSCI CCNGG 2 cut(s) 347, 380
BstSFI CTRYAG 1 cut(s) 420
BstX2I RGATCY 2 cut(s) 159, 482
BstYI RGATCY 2 cut(s) 159, 482
BsuRI GGCC 3 cut(s) 194, 386, 619
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 2 cut(s) 272, 417
BveI ACCTGC 1 cut(s) 415
Cac8I GCNNGC 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 384
Csp6I GTAC 1 cut(s) 631
CviAII CATG 1 cut(s) 304
CviQI GTAC 1 cut(s) 631
DdeI CTNAG 3 cut(s) 147, 456, 621
DpnI GATC 3 cut(s) 161, 399, 484
DpnII GATC 3 cut(s) 159, 397, 482
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 578
EciI GGCGGA 2 cut(s) 125, 132
Eco147I AGGCCT 1 cut(s) 619
Eco32I GATATC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 380
EcoRV GATATC 1 cut(s) 309
FaeI CATG 1 cut(s) 307
FaiI YATR 3 cut(s) 32, 305, 342
FaqI GGGAC 1 cut(s) 143
FatI CATG 1 cut(s) 303
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 4 cut(s) 11, 73, 108, 195
FokI GGATG 1 cut(s) 357
Fsp4HI GCNGC 4 cut(s) 11, 73, 108, 195
FspBI CTAG 1 cut(s) 634
GluI GCNGC 4 cut(s) 11, 73, 108, 195
GsaI CCCAGC 1 cut(s) 509
GsuI CTGGAG 3 cut(s) 296, 355, 449
HaeIII GGCC 3 cut(s) 194, 386, 619
HapII CCGG 3 cut(s) 20, 174, 349
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 1 cut(s) 307
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 7 cut(s) 55, 113, 119, 170, 179, 377, 454
HpaII CCGG 3 cut(s) 20, 174, 349
HphI GGTGA 2 cut(s) 392, 521
Hpy166II GTNNAC 2 cut(s) 51, 449
Hpy188I TCNGA 2 cut(s) 118, 169
Hpy188III TCNNGA 5 cut(s) 59, 183, 334, 374, 428
Hpy8I GTNNAC 2 cut(s) 51, 449
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 5 cut(s) 149, 202, 467, 518, 559
HpyCH4III ACNGT 2 cut(s) 257, 421
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 2 cut(s) 30, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 3 cut(s) 147, 456, 621
HpySE526I ACGT 1 cut(s) 414
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 3 cut(s) 159, 397, 482
LguI GCTCTTC 1 cut(s) 578
LmnI GCTCC 2 cut(s) 211, 336
LweI GCATC 1 cut(s) 55
MaeI CTAG 1 cut(s) 634
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 2 cut(s) 299, 415
MalI GATC 3 cut(s) 161, 399, 484
MbiI CCGCTC 1 cut(s) 588
MboI GATC 3 cut(s) 159, 397, 482
MboII GAAGA 5 cut(s) 74, 455, 542, 545, 595
MflI RGATCY 2 cut(s) 159, 482
MluCI AATT 2 cut(s) 260, 577
MlyI GAGTC 4 cut(s) 49, 113, 179, 448
MmeI TCCRAC 2 cut(s) 141, 474
MnlI CCTC 8 cut(s) 16, 230, 254, 424, 428, 562, 604, 618
MseI TTAA 1 cut(s) 576
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 3 cut(s) 20, 174, 349
MspR9I CCNGG 2 cut(s) 349, 382
MvaI CCWGG 1 cut(s) 382
MwoI GCNNNNNNNGC 1 cut(s) 16
NciI CCSGG 1 cut(s) 349
NdeII GATC 3 cut(s) 159, 397, 482
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 2 cut(s) 137, 338
NmuCI GTSAC 1 cut(s) 415
PceI AGGCCT 1 cut(s) 619
PciSI GCTCTTC 1 cut(s) 578
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PfeI GAWTC 3 cut(s) 113, 179, 377
PkrI GCNGC 4 cut(s) 12, 74, 109, 196
PleI GAGTC 4 cut(s) 49, 113, 178, 448
PpsI GAGTC 4 cut(s) 49, 113, 178, 448
Psp6I CCWGG 1 cut(s) 380
PspFI CCCAGC 1 cut(s) 505
PspGI CCWGG 1 cut(s) 380
PspN4I GGNNCC 2 cut(s) 137, 338
PspPI GGNCC 1 cut(s) 384
PsuI RGATCY 2 cut(s) 159, 482
RsaI GTAC 1 cut(s) 632
RsaNI GTAC 1 cut(s) 631
SapI GCTCTTC 1 cut(s) 578
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 4 cut(s) 11, 73, 108, 195
Sau3AI GATC 3 cut(s) 159, 397, 482
Sau96I GGNCC 1 cut(s) 384
ScaI AGTACT 1 cut(s) 632
SchI GAGTC 4 cut(s) 49, 113, 179, 448
ScrFI CCNGG 2 cut(s) 349, 382
SfaNI GCATC 1 cut(s) 55
SfcI CTRYAG 1 cut(s) 420
Sse9I AATT 2 cut(s) 260, 577
SseBI AGGCCT 1 cut(s) 619
SsiI CCGC 8 cut(s) 13, 73, 107, 110, 143, 195, 410, 588
SspMI CTAG 1 cut(s) 634
StuI AGGCCT 1 cut(s) 619
StyD4I CCNGG 2 cut(s) 347, 380
TaaI ACNGT 2 cut(s) 257, 421
TaiI ACGT 1 cut(s) 417
TasI AATT 2 cut(s) 260, 577
TatI WGTACW 1 cut(s) 630
TauI GCSGC 3 cut(s) 75, 110, 197
TfiI GAWTC 3 cut(s) 113, 179, 377
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TscAI CASTG 2 cut(s) 279, 424
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 415
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 2 cut(s) 279, 424
XspI CTAG 1 cut(s) 634
ZraI GACGTC 1 cut(s) 415
ZrmI AGTACT 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.