Rroxscaffold_6G00428000

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000189
Physical Location & Seq
Forward (+)
48506014 .. 48507621
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428000.1

Sequence Viewer

Length: 462 bp
ATGATATCTGCAAGAGAGCTTGGTATTGTCTGGAGCCATATTCCCCAGTTTTGGACATGGACTTCTCATCCTGAATCCAGGTTTCCGGAGGTGGCTGAGCTTCTTGAGGTTTGCTGGCTTGAAATCAATGGGAAACTTGAAACACGCTTGCTGTCCCCATCGACTCTGTACAAAGCTTACCTTGTGTTCAAGTTTACTCGAAGGGCCAATGGATTTGATCACCTACCTGCGGAGGTCACTGTAGGTCTGGAGGGAGGAGAACAGGGTAAACAGACTCAGTTTCTTCACAACGAAGGGGAGAGATCTGGGTGGTTGGAGATTGAGCTGGGTGAGTTTTTTTGTGAAGGGGAAGAAGATCAAGATGGGCTGTTGAAAATGCGTTGTGTGGCGAAGGAGGGTCTTAATTGGAAGAGCGGTCTTATTGTTCAAGGCATTGAGGTCAGGCCTAAGAGGAAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

153

Amino Acids

17.62

Weight (kDa)

5.45

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 1 - 149 4.2e-48 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 235
AccBSI CCGCTC 1 cut(s) 414
AccIII TCCGGA 1 cut(s) 85
AciI CCGC 2 cut(s) 230, 414
AfaI GTAC 2 cut(s) 170, 458
AfiI CCNNNNNNNGG 2 cut(s) 51, 229
AgsI TTSAA 5 cut(s) 122, 140, 190, 373, 428
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 4 cut(s) 19, 100, 176, 325
AluI AGCT 4 cut(s) 19, 100, 176, 325
Aor13HI TCCGGA 1 cut(s) 85
AoxI GGCC 2 cut(s) 204, 443
AspS9I GGNCC 1 cut(s) 204
AsuHPI GGTGA 2 cut(s) 212, 341
BccI CCATC 2 cut(s) 166, 356
BciT130I CCWGG 1 cut(s) 79
BclI TGATCA 1 cut(s) 217
BfaI CTAG 1 cut(s) 460
BfmI CTRYAG 1 cut(s) 240
BfuAI ACCTGC 1 cut(s) 235
BglII AGATCT 1 cut(s) 302
BlpI GCTNAGC 1 cut(s) 96
BmcAI AGTACT 1 cut(s) 458
Bme1390I CCNGG 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 79
BmrI ACTGGG 1 cut(s) 40
BmuI ACTGGG 1 cut(s) 40
BpmI CTGGAG 2 cut(s) 52, 269
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 85
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 229
Bse1I ACTGG 1 cut(s) 46
BseAI TCCGGA 1 cut(s) 85
BseBI CCWGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 2 cut(s) 51, 229
BseMII CTCAG 2 cut(s) 87, 290
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 270
BseYI CCCAGC 1 cut(s) 325
BshFI GGCC 2 cut(s) 206, 445
BsiSI CCGG 1 cut(s) 86
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 51, 229
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 2 cut(s) 206, 445
Bsp13I TCCGGA 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 168
Bsp143I GATC 3 cut(s) 217, 302, 355
Bsp1720I GCTNAGC 1 cut(s) 96
BspACI CCGC 2 cut(s) 230, 414
BspANI GGCC 2 cut(s) 206, 445
BspCNI CTCAG 2 cut(s) 88, 289
BspEI TCCGGA 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 35
BspMI ACCTGC 1 cut(s) 235
BspQI GCTCTTC 1 cut(s) 404
BsrBI CCGCTC 1 cut(s) 414
BsrGI TGTACA 1 cut(s) 168
BsrI ACTGG 1 cut(s) 46
BssMI GATC 3 cut(s) 217, 302, 355
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 404
BstAUI TGTACA 1 cut(s) 168
BstC8I GCNNGC 2 cut(s) 116, 149
BstDEI CTNAG 3 cut(s) 96, 276, 447
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 3 cut(s) 220, 305, 358
BstMBI GATC 3 cut(s) 217, 302, 355
BstNI CCWGG 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 77
BstSFI CTRYAG 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BsuRI GGCC 2 cut(s) 206, 445
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 116, 149
Cfr13I GGNCC 1 cut(s) 204
Csp6I GTAC 2 cut(s) 169, 457
CviAII CATG 1 cut(s) 57
CviQI GTAC 2 cut(s) 169, 457
DdeI CTNAG 3 cut(s) 96, 276, 447
DpnI GATC 3 cut(s) 219, 304, 357
DpnII GATC 3 cut(s) 217, 302, 355
Eam1104I CTCTTC 1 cut(s) 404
EarI CTCTTC 1 cut(s) 404
Eco147I AGGCCT 1 cut(s) 445
Eco32I GATATC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 77
EcoRV GATATC 1 cut(s) 6
FaeI CATG 1 cut(s) 60
FaiI YATR 2 cut(s) 39, 58
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FaqI GGGAC 1 cut(s) 139
FatI CATG 1 cut(s) 56
FbaI TGATCA 1 cut(s) 217
FokI GGATG 1 cut(s) 54
FspBI CTAG 1 cut(s) 460
GsaI CCCAGC 1 cut(s) 329
GsuI CTGGAG 2 cut(s) 52, 269
HaeIII GGCC 2 cut(s) 206, 445
HapII CCGG 1 cut(s) 86
Hin1II CATG 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 3 cut(s) 74, 163, 274
HpaII CCGG 1 cut(s) 86
HphI GGTGA 2 cut(s) 212, 341
Hpy166II GTNNAC 2 cut(s) 195, 269
Hpy188III TCNNGA 6 cut(s) 31, 71, 86, 104, 248, 359
Hpy8I GTNNAC 2 cut(s) 195, 269
HpyAV CCTTC 4 cut(s) 195, 287, 338, 385
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 1 cut(s) 11
HpyF3I CTNAG 3 cut(s) 96, 276, 447
Hsp92II CATG 1 cut(s) 60
Kpn2I TCCGGA 1 cut(s) 85
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 3 cut(s) 217, 302, 355
LguI GCTCTTC 1 cut(s) 404
LmnI GCTCC 1 cut(s) 33
MaeI CTAG 1 cut(s) 460
MaeIII GTNAC 1 cut(s) 235
MalI GATC 3 cut(s) 219, 304, 357
MbiI CCGCTC 1 cut(s) 414
MboI GATC 3 cut(s) 217, 302, 355
MboII GAAGA 4 cut(s) 275, 362, 365, 421
MflI RGATCY 1 cut(s) 302
MluCI AATT 1 cut(s) 403
MlyI GAGTC 2 cut(s) 157, 268
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 8 cut(s) 82, 100, 226, 244, 248, 388, 430, 444
MroI TCCGGA 1 cut(s) 85
MseI TTAA 1 cut(s) 402
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 79
MvaI CCWGG 1 cut(s) 79
NdeII GATC 3 cut(s) 217, 302, 355
NlaIII CATG 1 cut(s) 60
NlaIV GGNNCC 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 235
PceI AGGCCT 1 cut(s) 445
PciSI GCTCTTC 1 cut(s) 404
PfeI GAWTC 1 cut(s) 74
PleI GAGTC 2 cut(s) 157, 268
PpsI GAGTC 2 cut(s) 157, 268
Psp6I CCWGG 1 cut(s) 77
PspFI CCCAGC 1 cut(s) 325
PspGI CCWGG 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 35
PspPI GGNCC 1 cut(s) 204
PsuI RGATCY 1 cut(s) 302
RsaI GTAC 2 cut(s) 170, 458
RsaNI GTAC 2 cut(s) 169, 457
SapI GCTCTTC 1 cut(s) 404
SaqAI TTAA 1 cut(s) 402
Sau3AI GATC 3 cut(s) 217, 302, 355
Sau96I GGNCC 1 cut(s) 204
ScaI AGTACT 1 cut(s) 458
SchI GAGTC 2 cut(s) 157, 268
ScrFI CCNGG 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 1 cut(s) 403
SseBI AGGCCT 1 cut(s) 445
SsiI CCGC 2 cut(s) 230, 414
SspMI CTAG 1 cut(s) 460
StuI AGGCCT 1 cut(s) 445
StyD4I CCNGG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 2 cut(s) 161, 199
TasI AATT 1 cut(s) 403
TatI WGTACW 2 cut(s) 168, 456
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspRI CASTG 1 cut(s) 244
XspI CTAG 1 cut(s) 460
ZrmI AGTACT 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.