FvH4_6g01020

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000189
Physical Location & Seq
Forward (+)
566032 .. 567547
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01020.t1

Sequence Viewer

Length: 843 bp
ATGGATATGACGCAGCATCTAGATTTTCAAGCGTTGCCGGAAGGATGCATTGCCAACGTGATCTCATTGACCAGTCCTCCAGATGCGTGTAGGCTATCGGTGCTTTCTAGGGTTATCAAATTGGCAGCGGAATCCGACGCCGTTTGGGATAAGTTCCTTCCGCCGGAGACCCATGAGATCCTATCCCACTCCGCCACCGCTTCCGCTGCCAAATTCAAGAAGGAGCTCTACATGTCTCTCAGCCACACCCCGGTCCTCATTGACGATGCCGCTATGAGCTTTTCTCTGGAAAAATGGACGGGAAAGAAATGTTACATGATAGCTGCAAAGTGCCTTCGGATTGCTTGGGGTGATACTCCTCAATATTGGCAATGGAAAACTCTGCCTAACACCAGGTTCGACGAAGTGGCTGAGCTTCAGTGGCTTGGTTGGTTTGAAATTCGTGGGAGAATTGCTACACGCATGCTTTCTCCATCAATTCTATATAAAGCTTATCTTGTGTACAAGTTTACTGAAGGCGCATGGGGCTTTGAAAACAATCCTATGGTGGTGGCGGTTTCTGCAAGAGCTTATGGCTTTGATTATGAATGCCCTACTTTGAGTGAAATGCTTGAAGGAGGAGAGCTTAAGCACACTGCCATTCTTGCACATCCCGAGAGAATATCCAATAATGAAGCTCATGATCAGAAGTTTCCATCGAAAAGGACAGATGGCTGGTTGGAGATGAAGCTGGGTGAATTTTTCTGTCAAGGAGGAGAAGAGGGAGAGCTGGAGATGATTTGTTGTGAGCTCATTGGCAGCAAGAGTGGCATCATTGTGCAAGGGATTGAGATCAGACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

281

Amino Acids

31.58

Weight (kDa)

5.35

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 102 - 280 2e-44 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 128, 161, 192, 198, 204, 270, 554
AclWI GGATC 1 cut(s) 172
AcsI RAATTY 3 cut(s) 212, 438, 737
AcuI CTGAAG 2 cut(s) 401, 534
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 2 cut(s) 163, 250
AflII CTTAAG 1 cut(s) 626
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 5 cut(s) 29, 217, 437, 533, 614
AjnI CCWGG 1 cut(s) 392
Alw21I GWGCWC 2 cut(s) 228, 792
Alw26I GTCTC 2 cut(s) 161, 240
AlwI GGATC 1 cut(s) 172
Ama87I CYCGRG 1 cut(s) 653
ApeKI GCWGC 5 cut(s) 13, 125, 206, 323, 798
ApoI RAATTY 3 cut(s) 212, 438, 737
AspLEI GCGC 1 cut(s) 521
AspS9I GGNCC 1 cut(s) 253
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 2 cut(s) 362, 746
AvaI CYCGRG 1 cut(s) 653
AvaII GGWCC 1 cut(s) 253
BanII GRGCYC 2 cut(s) 228, 792
BarI GAAGNNNNNNTAC 2 cut(s) 212, 244
Bbv12I GWGCWC 2 cut(s) 228, 792
BbvI GCAGC 5 cut(s) 25, 137, 193, 310, 810
BccI CCATC 3 cut(s) 481, 703, 704
BceAI ACGGC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 394
BclI TGATCA 1 cut(s) 682
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 2 cut(s) 161, 240
BfaI CTAG 2 cut(s) 20, 108
BfrI CTTAAG 1 cut(s) 626
BisI GCNGC 6 cut(s) 14, 126, 207, 270, 324, 799
BlpI GCTNAGC 1 cut(s) 411
BlsI GCNGC 6 cut(s) 15, 127, 208, 271, 325, 800
Bme1390I CCNGG 2 cut(s) 251, 394
Bme18I GGWCC 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 653
BmgT120I GGNCC 1 cut(s) 253
BmrFI CCNGG 2 cut(s) 251, 394
BmsI GCATC 5 cut(s) 25, 35, 73, 256, 819
BplI GAGNNNNNCTC 2 cut(s) 268, 300
BpmI CTGGAG 2 cut(s) 63, 791
Bpu1102I GCTNAGC 1 cut(s) 411
BpuMI CCSGG 1 cut(s) 251
BsaBI GATNNNNATC 1 cut(s) 830
BsaHI GRCGYC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 249
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 250
Bse1I ACTGG 1 cut(s) 72
Bse3DI GCAATG 2 cut(s) 48, 377
Bse8I GATNNNNATC 1 cut(s) 830
BseBI CCWGG 1 cut(s) 394
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 2 cut(s) 50, 649
BseJI GATNNNNATC 1 cut(s) 830
BseLI CCNNNNNNNGG 2 cut(s) 163, 250
BseMI GCAATG 2 cut(s) 48, 377
BseMII CTCAG 2 cut(s) 253, 402
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 3 cut(s) 348, 633, 768
BseXI GCAGC 5 cut(s) 25, 137, 193, 310, 810
BseYI CCCAGC 1 cut(s) 730
BsiHKAI GWGCWC 2 cut(s) 228, 792
BsiHKCI CYCGRG 1 cut(s) 653
BsiSI CCGG 3 cut(s) 38, 164, 251
BslI CCNNNNNNNGG 2 cut(s) 163, 250
BsmAI GTCTC 2 cut(s) 161, 240
BsmI GAATGC 1 cut(s) 593
Bso31I GGTCTC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 653
Bsp1286I GDGCHC 2 cut(s) 228, 792
Bsp1407I TGTACA 1 cut(s) 501
Bsp143I GATC 4 cut(s) 60, 177, 682, 831
Bsp1720I GCTNAGC 1 cut(s) 411
BspACI CCGC 7 cut(s) 128, 161, 192, 198, 204, 270, 554
BspCNI CTCAG 2 cut(s) 252, 403
BspHI TCATGA 1 cut(s) 679
BspPI GGATC 1 cut(s) 172
BspTI CTTAAG 1 cut(s) 626
BspTNI GGTCTC 1 cut(s) 161
BsrDI GCAATG 2 cut(s) 48, 377
BsrGI TGTACA 1 cut(s) 501
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 4 cut(s) 60, 177, 682, 831
BssNI GRCGYC 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 394
Bst6I CTCTTC 1 cut(s) 753
BstACI GRCGYC 1 cut(s) 138
BstAFI CTTAAG 1 cut(s) 626
BstAUI TGTACA 1 cut(s) 501
BstC8I GCNNGC 1 cut(s) 464
BstDEI CTNAG 2 cut(s) 239, 411
BstF5I GGATG 2 cut(s) 50, 649
BstHHI GCGC 1 cut(s) 521
BstKTI GATC 4 cut(s) 63, 180, 685, 834
BstMAI GTCTC 2 cut(s) 161, 240
BstMBI GATC 4 cut(s) 60, 177, 682, 831
BstMWI GCNNNNNNNGC 7 cut(s) 100, 206, 421, 525, 560, 644, 807
BstNI CCWGG 1 cut(s) 394
BstNSI RCATGY 2 cut(s) 235, 466
BstSCI CCNGG 2 cut(s) 249, 392
BstV1I GCAGC 5 cut(s) 25, 137, 193, 310, 810
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
BtsCI GGATG 2 cut(s) 50, 649
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 2 cut(s) 425, 633
Cac8I GCNNGC 1 cut(s) 464
CciI TCATGA 1 cut(s) 679
CfoI GCGC 1 cut(s) 521
Cfr13I GGNCC 1 cut(s) 253
CseI GACGC 2 cut(s) 19, 146
CsiI ACCWGGT 1 cut(s) 392
Csp6I GTAC 1 cut(s) 502
CviAII CATG 7 cut(s) 173, 232, 316, 463, 522, 680, 840
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 2 cut(s) 239, 411
DpnI GATC 4 cut(s) 62, 179, 684, 833
DpnII GATC 4 cut(s) 60, 177, 682, 831
Eam1104I CTCTTC 1 cut(s) 753
EarI CTCTTC 1 cut(s) 753
EciI GGCGGA 2 cut(s) 150, 181
Ecl136II GAGCTC 2 cut(s) 226, 790
Eco24I GRGCYC 2 cut(s) 228, 792
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 253
Eco53kI GAGCTC 2 cut(s) 226, 790
Eco57I CTGAAG 2 cut(s) 401, 534
Eco88I CYCGRG 1 cut(s) 653
EcoICRI GAGCTC 2 cut(s) 226, 790
EcoRII CCWGG 1 cut(s) 392
EcoT22I ATGCAT 1 cut(s) 50
EcoT38I GRGCYC 2 cut(s) 228, 792
FaeI CATG 7 cut(s) 176, 235, 319, 466, 525, 683, 843
FalI AAGNNNNNCTT 2 cut(s) 480, 512
FatI CATG 7 cut(s) 172, 231, 315, 462, 521, 679, 839
FbaI TGATCA 1 cut(s) 682
Fnu4HI GCNGC 6 cut(s) 14, 126, 207, 270, 324, 799
FokI GGATG 2 cut(s) 57, 636
FriOI GRGCYC 2 cut(s) 228, 792
Fsp4HI GCNGC 6 cut(s) 14, 126, 207, 270, 324, 799
FspBI CTAG 2 cut(s) 20, 108
GlaI GCGC 1 cut(s) 520
GluI GCNGC 6 cut(s) 14, 126, 207, 270, 324, 799
GsaI CCCAGC 1 cut(s) 734
GsuI CTGGAG 2 cut(s) 63, 791
HapII CCGG 3 cut(s) 38, 164, 251
HgaI GACGC 2 cut(s) 19, 146
HhaI GCGC 1 cut(s) 521
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 7 cut(s) 176, 235, 319, 466, 525, 683, 843
Hin6I GCGC 1 cut(s) 519
HinP1I GCGC 1 cut(s) 519
HindIII AAGCTT 1 cut(s) 489
HinfI GANTC 1 cut(s) 131
HpaII CCGG 3 cut(s) 38, 164, 251
HphI GGTGA 2 cut(s) 362, 746
Hpy166II GTNNAC 2 cut(s) 502, 510
Hpy188I TCNGA 4 cut(s) 136, 339, 687, 836
Hpy188III TCNNGA 6 cut(s) 20, 80, 217, 287, 653, 680
Hpy8I GTNNAC 2 cut(s) 502, 510
Hpy99I CGWCG 2 cut(s) 140, 404
HpyAV CCTTC 6 cut(s) 35, 167, 214, 344, 509, 608
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 5 cut(s) 48, 326, 563, 647, 820
HpyF10VI GCNNNNNNNGC 7 cut(s) 100, 206, 421, 525, 560, 644, 807
HpyF3I CTNAG 2 cut(s) 239, 411
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 7 cut(s) 176, 235, 319, 466, 525, 683, 843
HspAI GCGC 1 cut(s) 519
Ksp22I TGATCA 1 cut(s) 682
Kzo9I GATC 4 cut(s) 60, 177, 682, 831
LmnI GCTCC 1 cut(s) 223
Lsp1109I GCAGC 5 cut(s) 25, 137, 193, 310, 810
LweI GCATC 5 cut(s) 25, 35, 73, 256, 819
MabI ACCWGGT 1 cut(s) 392
MaeI CTAG 2 cut(s) 20, 108
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 311
MalI GATC 4 cut(s) 62, 179, 684, 833
MboI GATC 4 cut(s) 60, 177, 682, 831
MboII GAAGA 1 cut(s) 770
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 2 cut(s) 228, 792
MluCI AATT 6 cut(s) 119, 212, 438, 450, 477, 737
MmeI TCCRAC 2 cut(s) 159, 699
MnlI CCTC 6 cut(s) 87, 266, 369, 611, 746, 754
Mph1103I ATGCAT 1 cut(s) 50
MseI TTAA 1 cut(s) 627
MslI CAYNNNNRTG 1 cut(s) 815
MspA1I CMGCKG 2 cut(s) 128, 206
MspCI CTTAAG 1 cut(s) 626
MspI CCGG 3 cut(s) 38, 164, 251
MspR9I CCNGG 2 cut(s) 251, 394
Mva1269I GAATGC 1 cut(s) 593
MvaI CCWGG 1 cut(s) 394
MwoI GCNNNNNNNGC 7 cut(s) 100, 206, 421, 525, 560, 644, 807
NciI CCSGG 1 cut(s) 251
NdeII GATC 4 cut(s) 60, 177, 682, 831
NlaIII CATG 7 cut(s) 176, 235, 319, 466, 525, 683, 843
NsiI ATGCAT 1 cut(s) 50
NspI RCATGY 2 cut(s) 235, 466
PaeI GCATGC 1 cut(s) 466
PagI TCATGA 1 cut(s) 679
PciI ACATGT 1 cut(s) 231
PctI GAATGC 1 cut(s) 593
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 6 cut(s) 15, 127, 208, 271, 325, 800
PscI ACATGT 1 cut(s) 231
Psp124BI GAGCTC 2 cut(s) 228, 792
Psp6I CCWGG 1 cut(s) 392
PspFI CCCAGC 1 cut(s) 730
PspGI CCWGG 1 cut(s) 392
PspPI GGNCC 1 cut(s) 253
PsuI RGATCY 1 cut(s) 177
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
RseI CAYNNNNRTG 1 cut(s) 815
SacI GAGCTC 2 cut(s) 228, 792
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 6 cut(s) 14, 126, 207, 270, 324, 799
Sau3AI GATC 4 cut(s) 60, 177, 682, 831
Sau96I GGNCC 1 cut(s) 253
ScrFI CCNGG 2 cut(s) 251, 394
SduI GDGCHC 2 cut(s) 228, 792
SexAI ACCWGGT 1 cut(s) 392
SfaNI GCATC 5 cut(s) 25, 35, 73, 256, 819
SinI GGWCC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 815
SmlI CTYRAG 1 cut(s) 626
SmoI CTYRAG 1 cut(s) 626
SphI GCATGC 1 cut(s) 466
Sse9I AATT 6 cut(s) 119, 212, 438, 450, 477, 737
SsiI CCGC 7 cut(s) 128, 161, 192, 198, 204, 270, 554
SspI AATATT 1 cut(s) 365
SspMI CTAG 2 cut(s) 20, 108
SstI GAGCTC 2 cut(s) 228, 792
StyD4I CCNGG 2 cut(s) 249, 392
TaiI ACGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 399, 698
TasI AATT 6 cut(s) 119, 212, 438, 450, 477, 737
TatI WGTACW 1 cut(s) 501
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 2 cut(s) 425, 640
TseI GCWGC 5 cut(s) 13, 125, 206, 323, 798
TspDTI ATGAA 3 cut(s) 600, 687, 740
TspRI CASTG 2 cut(s) 425, 640
Vha464I CTTAAG 1 cut(s) 626
VpaK11BI GGWCC 1 cut(s) 253
XapI RAATTY 3 cut(s) 212, 438, 737
XbaI TCTAGA 1 cut(s) 19
XceI RCATGY 2 cut(s) 235, 466
XspI CTAG 2 cut(s) 20, 108
Zsp2I ATGCAT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.