Rorug02G0614700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000189
Physical Location & Seq
Reverse (-)
73228903 .. 73229295
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0614700.1

Sequence Viewer

Length: 393 bp
ATGGACACCGGAGCGGCGGGAGTGGGTCTCGCCGCGTCGTCGTCGTCGGCGGAGGACCCGTCGTCTCGGGGGATCGCCGCTCAACGCCGTCCAGGCGTGGAGCTTCGGCGTGTCACGCCGATACCAGCACCTGCTCGACAAAACGACGCCGCACGTCCTCCACCGCTAGCTCGCAACCCTCGGCGTGGCCTTGGTCTACGTCCTCCGCGTCTACTTCGTCCAGGGATTCTACATCATGTCATACGGCTTGGGGATCTACCTCCTCAACTTGCTCATCGGCTTTCTCTCTCCTCAGGTCGACCCGAAGATCCACGACCTTTCCTACGACCCCAGCCTCCCGACCCGCGGATCCGACAAGTTCCGCCCCTTCGTTCAACGCCTCCCCGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

130

Amino Acids

14.05

Weight (kDa)

12.0

Isoelectric Point (pI)

76.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 139
Acc36I ACCTGC 1 cut(s) 139
AccBSI CCGCTC 2 cut(s) 14, 80
AccI GTMKAC 3 cut(s) 196, 211, 298
AccII CGCG 3 cut(s) 35, 208, 346
AclWI GGATC 5 cut(s) 80, 261, 302, 343, 356
AcyI GRCGYC 1 cut(s) 147
AfiI CCNNNNNNNGG 2 cut(s) 185, 345
AgsI TTSAA 1 cut(s) 375
AhdI GACNNNNNGTC 1 cut(s) 61
AjiI CACGTC 1 cut(s) 155
AjnI CCWGG 2 cut(s) 91, 220
AluBI AGCT 2 cut(s) 103, 170
AluI AGCT 2 cut(s) 103, 170
Alw26I GTCTC 2 cut(s) 32, 69
AlwI GGATC 5 cut(s) 80, 261, 302, 343, 356
AlwNI CAGNNNCTG 1 cut(s) 131
Ama87I CYCGRG 2 cut(s) 66, 384
AoxI GGCC 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 55
AsuNHI GCTAGC 1 cut(s) 166
AvaI CYCGRG 2 cut(s) 66, 384
AvaII GGWCC 1 cut(s) 55
AxyI CCTNAGG 1 cut(s) 292
BamHI GGATCC 1 cut(s) 348
BceAI ACGGC 2 cut(s) 72, 260
BciT130I CCWGG 2 cut(s) 93, 222
BcoDI GTCTC 2 cut(s) 32, 69
BfaI CTAG 1 cut(s) 167
BfuAI ACCTGC 1 cut(s) 139
BglI GCCNNNNNGGC 1 cut(s) 93
BisI GCNGC 4 cut(s) 15, 33, 78, 150
BlsI GCNGC 4 cut(s) 16, 34, 79, 151
Bme1390I CCNGG 2 cut(s) 93, 222
Bme18I GGWCC 1 cut(s) 55
BmeRI GACNNNNNGTC 1 cut(s) 61
BmeT110I CYCGRG 2 cut(s) 66, 384
BmgBI CACGTC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 57, 350
BmrFI CCNGG 2 cut(s) 93, 222
BmtI GCTAGC 1 cut(s) 170
BplI GAGNNNNNCTC 2 cut(s) 12, 44
BsaHI GRCGYC 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 4 cut(s) 179, 190, 221, 344
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 345
Bse21I CCTNAGG 1 cut(s) 292
BseBI CCWGG 2 cut(s) 93, 222
BseDI CCNNGG 4 cut(s) 179, 190, 221, 344
BseLI CCNNNNNNNGG 2 cut(s) 185, 345
BseMII CTCAG 1 cut(s) 306
BseRI GAGGAG 2 cut(s) 252, 280
BseYI CCCAGC 1 cut(s) 330
Bsh1236I CGCG 3 cut(s) 35, 208, 346
BshFI GGCC 1 cut(s) 189
BsiHKCI CYCGRG 2 cut(s) 66, 384
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 2 cut(s) 185, 345
BsmAI GTCTC 2 cut(s) 32, 69
BsmBI CGTCTC 1 cut(s) 69
BsnI GGCC 1 cut(s) 189
Bso31I GGTCTC 1 cut(s) 32
BsoBI CYCGRG 2 cut(s) 66, 384
Bsp143I GATC 4 cut(s) 72, 253, 307, 348
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 305
BspFNI CGCG 3 cut(s) 35, 208, 346
BspLI GGNNCC 2 cut(s) 57, 350
BspMI ACCTGC 1 cut(s) 139
BspOI GCTAGC 1 cut(s) 170
BspPI GGATC 5 cut(s) 80, 261, 302, 343, 356
BspTNI GGTCTC 1 cut(s) 32
BsrBI CCGCTC 2 cut(s) 14, 80
BssECI CCNNGG 4 cut(s) 179, 190, 221, 344
BssMI GATC 4 cut(s) 72, 253, 307, 348
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 190
Bst2UI CCWGG 2 cut(s) 93, 222
BstACI GRCGYC 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 168, 172
BstDEI CTNAG 1 cut(s) 292
BstDSI CCRYGG 1 cut(s) 344
BstFNI CGCG 3 cut(s) 35, 208, 346
BstKTI GATC 4 cut(s) 75, 256, 310, 351
BstMAI GTCTC 2 cut(s) 32, 69
BstMBI GATC 4 cut(s) 72, 253, 307, 348
BstMWI GCNNNNNNNGC 2 cut(s) 93, 115
BstNI CCWGG 2 cut(s) 93, 222
BstSCI CCNGG 2 cut(s) 91, 220
BstUI CGCG 3 cut(s) 35, 208, 346
BstX2I RGATCY 3 cut(s) 253, 307, 348
BstYI RGATCY 3 cut(s) 253, 307, 348
Bsu36I CCTNAGG 1 cut(s) 292
BsuRI GGCC 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 344
BtrI CACGTC 1 cut(s) 155
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 2 cut(s) 168, 172
CaiI CAGNNNCTG 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 55
Cfr42I CCGCGG 1 cut(s) 347
CseI GACGC 3 cut(s) 24, 155, 197
CviAII CATG 1 cut(s) 236
CviJI RGCY 6 cut(s) 103, 170, 189, 247, 280, 334
CviKI_1 RGCY 6 cut(s) 103, 170, 189, 247, 280, 334
DdeI CTNAG 1 cut(s) 292
DpnI GATC 4 cut(s) 74, 255, 309, 350
DpnII GATC 4 cut(s) 72, 253, 307, 348
DriI GACNNNNNGTC 1 cut(s) 61
Eam1105I GACNNNNNGTC 1 cut(s) 61
EciI GGCGGA 2 cut(s) 65, 351
Eco130I CCWWGG 1 cut(s) 190
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 55
Eco81I CCTNAGG 1 cut(s) 292
Eco88I CYCGRG 2 cut(s) 66, 384
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 91, 220
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 1 cut(s) 239
FaiI YATR 2 cut(s) 237, 242
FatI CATG 1 cut(s) 235
FauI CCCGC 2 cut(s) 10, 351
FblI GTMKAC 3 cut(s) 196, 211, 298
Fnu4HI GCNGC 4 cut(s) 15, 33, 78, 150
Fsp4HI GCNGC 4 cut(s) 15, 33, 78, 150
FspBI CTAG 1 cut(s) 167
GluI GCNGC 4 cut(s) 15, 33, 78, 150
GsaI CCCAGC 1 cut(s) 334
HaeIII GGCC 1 cut(s) 189
HapII CCGG 1 cut(s) 9
HgaI GACGC 3 cut(s) 24, 155, 197
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 1 cut(s) 239
HincII GTYRAC 1 cut(s) 299
HindII GTYRAC 1 cut(s) 299
HinfI GANTC 1 cut(s) 226
HpaII CCGG 1 cut(s) 9
Hpy166II GTNNAC 3 cut(s) 197, 212, 299
Hpy188I TCNGA 1 cut(s) 353
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 3 cut(s) 197, 212, 299
Hpy99I CGWCG 6 cut(s) 40, 43, 46, 49, 64, 149
HpyAV CCTTC 1 cut(s) 377
HpyCH4IV ACGT 2 cut(s) 154, 199
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 115
HpyF3I CTNAG 1 cut(s) 292
HpySE526I ACGT 2 cut(s) 154, 199
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 1 cut(s) 239
KspI CCGCGG 1 cut(s) 347
Kzo9I GATC 4 cut(s) 72, 253, 307, 348
LmnI GCTCC 2 cut(s) 11, 100
LpnPI CCDG 9 cut(s) 22, 78, 105, 138, 144, 207, 234, 279, 344
MaeI CTAG 1 cut(s) 167
MaeII ACGT 2 cut(s) 154, 199
MaeIII GTNAC 1 cut(s) 112
MalI GATC 4 cut(s) 74, 255, 309, 350
MbiI CCGCTC 2 cut(s) 14, 80
MboI GATC 4 cut(s) 72, 253, 307, 348
MboII GAAGA 1 cut(s) 317
MflI RGATCY 3 cut(s) 253, 307, 348
MmeI TCCRAC 1 cut(s) 376
MnlI CCTC 9 cut(s) 46, 168, 189, 213, 270, 273, 301, 345, 390
MseI TTAA 1 cut(s) 391
MspA1I CMGCKG 1 cut(s) 346
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 2 cut(s) 93, 222
MvaI CCWGG 2 cut(s) 93, 222
MvnI CGCG 3 cut(s) 35, 208, 346
MwoI GCNNNNNNNGC 2 cut(s) 93, 115
NdeII GATC 4 cut(s) 72, 253, 307, 348
NheI GCTAGC 1 cut(s) 166
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 2 cut(s) 57, 350
NmeAIII GCCGAG 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 112
PaqCI CACCTGC 1 cut(s) 139
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PfeI GAWTC 1 cut(s) 226
PkrI GCNGC 4 cut(s) 16, 34, 79, 151
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 2 cut(s) 91, 220
PspFI CCCAGC 1 cut(s) 330
PspGI CCWGG 2 cut(s) 91, 220
PspN4I GGNNCC 2 cut(s) 57, 350
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 131
PsuI RGATCY 3 cut(s) 253, 307, 348
SacII CCGCGG 1 cut(s) 347
SalI GTCGAC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 391
SatI GCNGC 4 cut(s) 15, 33, 78, 150
Sau3AI GATC 4 cut(s) 72, 253, 307, 348
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 2 cut(s) 93, 222
SetI ASST 8 cut(s) 105, 133, 157, 172, 202, 262, 298, 319
Sfr303I CCGCGG 1 cut(s) 347
SgrBI CCGCGG 1 cut(s) 347
SinI GGWCC 1 cut(s) 55
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 2 cut(s) 91, 220
StyI CCWWGG 1 cut(s) 190
TaiI ACGT 2 cut(s) 157, 202
TaqI TCGA 2 cut(s) 136, 298
TauI GCSGC 4 cut(s) 17, 35, 80, 152
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 1 cut(s) 391
Tru9I TTAA 1 cut(s) 391
TseFI GTSAC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 55
XmiI GTMKAC 3 cut(s) 196, 211, 298
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.