Rw3G002090

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000189
Physical Location & Seq
Forward (+)
1836454 .. 1837398
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002090.1

Sequence Viewer

Length: 570 bp
ATGTTCAAATCAGCGGCGGAATCCGACGCCGTTTGGGACAGGTTCATTCCGCCTGAGACACCCGAGACCCTGTCCGAGTCCGGCGAATCTGGATTATTGGCCGCCAAATCCAAGAAGGAGCTTTACCTCGCTCTCTGCAACAAACGTTTCCTCATCGACGACGGTAAATTGAGCTTTTCACTGGACAAACGGAGTGGGAAAAAATGTTACATGATATCTGCAAGAGAGCTTGGTATTATCTGGGGCGATGCTCCCCAGTATTGGAGATGGACTTCTCATCCTGAATCCAGGTTTCAGGAGGTGGCTGAGCTTCTTGATGTTTGCTGGCTTGAAATCAATGGGAAACTTGAAACACGCGTGCTGTCCCCATCGACTCTGTACAAAGCTTACCTTTCGTTCAAGTTTACTCCAGAGGCTTATGGATTTAAACATCTGCCTGCGGAGGTCACTATAGGTCTGGAGGGAGGAGAACATAGTAAACAGACTGTGTTTTTTCCCAACGAAGGAGAGATGGACTACTCAGAAGAAGAGATGGACTTCTCAGAAGGAGAGAGCGATGACTCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

189

Amino Acids

21.49

Weight (kDa)

4.78

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 67 - 165 3.1e-37 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 357
AciI CCGC 5 cut(s) 14, 17, 50, 102, 440
AclI AACGTT 1 cut(s) 145
AcoI YGGCCR 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 2 cut(s) 261, 503
AflIII ACRYGT 1 cut(s) 355
AgsI TTSAA 4 cut(s) 7, 332, 350, 400
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 5 cut(s) 121, 174, 229, 310, 386
AluI AGCT 5 cut(s) 121, 174, 229, 310, 386
Alw26I GTCTC 2 cut(s) 50, 59
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 1 cut(s) 99
AvaI CYCGRG 1 cut(s) 62
BarI GAAGNNNNNNTAC 2 cut(s) 107, 139
BccI CCATC 4 cut(s) 261, 376, 505, 526
BceAI ACGGC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 289
BcoDI GTCTC 2 cut(s) 50, 59
BfmI CTRYAG 1 cut(s) 450
BisI GCNGC 2 cut(s) 15, 102
BlpI GCTNAGC 1 cut(s) 306
BlsI GCNGC 2 cut(s) 16, 103
Bme1390I CCNGG 1 cut(s) 289
BmeT110I CYCGRG 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 289
BmrI ACTGGG 1 cut(s) 250
BmsI GCATC 1 cut(s) 238
BmuI ACTGGG 1 cut(s) 250
BpmI CTGGAG 2 cut(s) 393, 479
Bpu1102I GCTNAGC 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 59
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 503
Bse1I ACTGG 2 cut(s) 186, 256
BseBI CCWGG 1 cut(s) 289
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 2 cut(s) 261, 503
BseMII CTCAG 4 cut(s) 45, 297, 534, 555
BseNI ACTGG 2 cut(s) 186, 256
BseRI GAGGAG 1 cut(s) 480
Bsh1236I CGCG 1 cut(s) 357
BshFI GGCC 1 cut(s) 101
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 2 cut(s) 50, 349
BslI CCNNNNNNNGG 2 cut(s) 261, 503
BsmAI GTCTC 2 cut(s) 50, 59
BsmFI GGGAC 2 cut(s) 50, 349
BsnI GGCC 1 cut(s) 101
Bso31I GGTCTC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 62
Bsp1407I TGTACA 1 cut(s) 378
Bsp1720I GCTNAGC 1 cut(s) 306
BspACI CCGC 5 cut(s) 14, 17, 50, 102, 440
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 4 cut(s) 46, 298, 533, 554
BspFNI CGCG 1 cut(s) 357
BspTNI GGTCTC 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 378
BsrI ACTGG 2 cut(s) 186, 256
BssNI GRCGYC 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 2 cut(s) 164, 487
Bst6I CTCTTC 1 cut(s) 522
BstACI GRCGYC 1 cut(s) 27
BstAUI TGTACA 1 cut(s) 378
BstC8I GCNNGC 3 cut(s) 326, 359, 438
BstDEI CTNAG 4 cut(s) 54, 306, 520, 541
BstF5I GGATG 1 cut(s) 277
BstFNI CGCG 1 cut(s) 357
BstMAI GTCTC 2 cut(s) 50, 59
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 450
BstUI CGCG 1 cut(s) 357
BsuRI GGCC 1 cut(s) 101
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 3 cut(s) 326, 359, 438
CseI GACGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 379
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviAII CATG 1 cut(s) 211
CviJI RGCY 9 cut(s) 101, 121, 174, 229, 305, 310, 328, 386, 416
CviKI_1 RGCY 9 cut(s) 101, 121, 174, 229, 305, 310, 328, 386, 416
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 4 cut(s) 54, 306, 520, 541
DraI TTTAAA 1 cut(s) 427
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 522
EciI GGCGGA 2 cut(s) 32, 39
Eco31I GGTCTC 1 cut(s) 59
Eco32I GATATC 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 287
EcoRV GATATC 1 cut(s) 216
FaeI CATG 1 cut(s) 214
FaiI YATR 4 cut(s) 212, 420, 452, 474
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 2 cut(s) 50, 349
FatI CATG 1 cut(s) 210
Fnu4HI GCNGC 2 cut(s) 15, 102
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 2 cut(s) 15, 102
GluI GCNGC 2 cut(s) 15, 102
GsuI CTGGAG 2 cut(s) 393, 479
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 384
HinfI GANTC 6 cut(s) 20, 77, 86, 284, 373, 560
HpaII CCGG 1 cut(s) 81
Hpy166II GTNNAC 2 cut(s) 405, 479
Hpy188I TCNGA 4 cut(s) 25, 76, 523, 544
Hpy188III TCNNGA 6 cut(s) 90, 281, 296, 314, 410, 458
Hpy8I GTNNAC 2 cut(s) 405, 479
Hpy99I CGWCG 3 cut(s) 29, 161, 164
HpyAV CCTTC 3 cut(s) 109, 497, 539
HpyCH4III ACNGT 2 cut(s) 164, 487
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 2 cut(s) 138, 221
HpyF3I CTNAG 4 cut(s) 54, 306, 520, 541
HpySE526I ACGT 1 cut(s) 145
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 1 cut(s) 214
LmnI GCTCC 2 cut(s) 118, 256
LweI GCATC 1 cut(s) 238
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 2 cut(s) 206, 445
MboII GAAGA 2 cut(s) 536, 539
MluCI AATT 1 cut(s) 167
MluI ACGCGT 1 cut(s) 355
MlyI GAGTC 3 cut(s) 86, 367, 554
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 7 cut(s) 137, 161, 292, 406, 436, 454, 458
MseI TTAA 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 289
MvaI CCWGG 1 cut(s) 289
MvnI CGCG 1 cut(s) 357
NlaIII CATG 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 445
PfeI GAWTC 3 cut(s) 20, 86, 284
PflFI GACNNNGTC 1 cut(s) 70
PkrI GCNGC 2 cut(s) 16, 103
PleI GAGTC 3 cut(s) 85, 367, 554
PpsI GAGTC 3 cut(s) 85, 367, 554
Psp1406I AACGTT 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PsyI GACNNNGTC 1 cut(s) 70
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 2 cut(s) 15, 102
SchI GAGTC 3 cut(s) 86, 367, 554
ScrFI CCNGG 1 cut(s) 289
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 1 cut(s) 450
Sse9I AATT 1 cut(s) 167
SsiI CCGC 5 cut(s) 14, 17, 50, 102, 440
StyD4I CCNGG 1 cut(s) 287
TaaI ACNGT 2 cut(s) 164, 487
TaiI ACGT 1 cut(s) 148
TaqI TCGA 2 cut(s) 156, 371
TasI AATT 1 cut(s) 167
TatI WGTACW 1 cut(s) 378
TauI GCSGC 2 cut(s) 17, 104
TfiI GAWTC 3 cut(s) 20, 86, 284
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 1 cut(s) 186
TseFI GTSAC 1 cut(s) 445
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 1 cut(s) 34
TspGWI ACGGA 1 cut(s) 205
TspRI CASTG 1 cut(s) 186
Tth111I GACNNNGTC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.