Rmu_sc0023110.1_g000001

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023110.1
OG0000189
Physical Location & Seq
Forward (+)
470 .. 1151
682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023110.1_g000001.1.cds

Sequence Viewer

Length: 546 bp
atgatagctgcaaagcgccttcggattgcttggggtgatacttctaattattggacatggaaatctctgcccgagtccaggtttaaggaggctgtcgagcttcgtcttgtatgttggcttgaaatccgtgggagaattgaaacgcgcatgctgtccccatccacaacgtataaagcttatctggtgtacaagttaactaaacgcacttatggactagactggcctgccgtggtcacagttggtgcaagagcttatggatttgattatgaatgccctggtttgaaggaaataactgcaggcattaagcatactgcgattctggtgccccaaagaaaaatagaaggacatctcacaagacatcatgaaatcaatgaagttaaatttccaaatgaaagcagggcggatgggtggctggagatggagctgggtgagtttcactgtcaaggagacgaagacggggagttggaaatgatttgttgtgagactagtatgggtaagagtggtctccttgttcaagggattgaggttagaccaaaaaggaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

181

Amino Acids

20.82

Weight (kDa)

7.65

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 322
AccII CGCG 1 cut(s) 145
AciI CCGC 1 cut(s) 401
AcsI RAATTY 1 cut(s) 380
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 4 cut(s) 122, 140, 283, 515
AhlI ACTAGT 1 cut(s) 485
AjnI CCWGG 2 cut(s) 77, 274
AluBI AGCT 5 cut(s) 8, 100, 176, 251, 424
AluI AGCT 5 cut(s) 8, 100, 176, 251, 424
Alw26I GTCTC 3 cut(s) 441, 476, 509
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 380
AspLEI GCGC 2 cut(s) 18, 147
AsuHPI GGTGA 2 cut(s) 47, 440
AvaI CYCGRG 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 327
BanI GGYRCC 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 459
BccI CCATC 3 cut(s) 166, 398, 412
BceAI ACGGC 1 cut(s) 212
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BciT130I CCWGG 2 cut(s) 79, 276
BcoDI GTCTC 3 cut(s) 441, 476, 509
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 3 cut(s) 215, 486, 544
BfmI CTRYAG 1 cut(s) 294
BfoI RGCGCY 1 cut(s) 19
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme1390I CCNGG 2 cut(s) 79, 276
BmeT110I CYCGRG 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 2 cut(s) 79, 276
BpiI GAAGAC 1 cut(s) 459
BpmI CTGGAG 1 cut(s) 434
BsaI GGTCTC 1 cut(s) 509
BsaJI CCNNGG 3 cut(s) 127, 228, 274
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 224
BseBI CCWGG 2 cut(s) 79, 276
BseDI CCNNGG 3 cut(s) 127, 228, 274
BseGI GGATG 2 cut(s) 158, 409
BseLI CCNNNNNNNGG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 224
BseSI GKGCMC 1 cut(s) 327
BseYI CCCAGC 1 cut(s) 424
Bsh1236I CGCG 1 cut(s) 145
BshFI GGCC 1 cut(s) 223
BshNI GGYRCC 1 cut(s) 322
BsiHKCI CYCGRG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 78
BsmAI GTCTC 3 cut(s) 441, 476, 509
BsmBI CGTCTC 1 cut(s) 441
BsmFI GGGAC 1 cut(s) 139
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 1 cut(s) 223
Bso31I GGTCTC 1 cut(s) 509
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 327
Bsp1407I TGTACA 1 cut(s) 186
BspACI CCGC 1 cut(s) 401
BspANI GGCC 1 cut(s) 223
BspFNI CGCG 1 cut(s) 145
BspHI TCATGA 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 324
BspMAI CTGCAG 1 cut(s) 298
BspT107I GGYRCC 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 509
BsrGI TGTACA 1 cut(s) 186
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 3 cut(s) 127, 228, 274
Bst2UI CCWGG 2 cut(s) 79, 276
Bst4CI ACNGT 2 cut(s) 238, 440
BstAUI TGTACA 1 cut(s) 186
BstC8I GCNNGC 3 cut(s) 149, 225, 298
BstDSI CCRYGG 2 cut(s) 127, 228
BstF5I GGATG 2 cut(s) 158, 409
BstFNI CGCG 1 cut(s) 145
BstH2I RGCGCY 1 cut(s) 19
BstHHI GCGC 2 cut(s) 18, 147
BstMAI GTCTC 3 cut(s) 441, 476, 509
BstNI CCWGG 2 cut(s) 79, 276
BstNSI RCATGY 1 cut(s) 151
BstSCI CCNGG 2 cut(s) 77, 274
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 327
BstUI CGCG 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 459
BsuRI GGCC 1 cut(s) 223
BtgI CCRYGG 2 cut(s) 127, 228
BtsCI GGATG 2 cut(s) 158, 409
BtsIMutI CAGTG 1 cut(s) 436
Cac8I GCNNGC 3 cut(s) 149, 225, 298
CciI TCATGA 1 cut(s) 361
CfoI GCGC 2 cut(s) 18, 147
Csp6I GTAC 1 cut(s) 187
CviAII CATG 3 cut(s) 57, 148, 362
CviJI RGCY 9 cut(s) 8, 92, 100, 118, 176, 223, 251, 412, 424
CviKI_1 RGCY 9 cut(s) 8, 92, 100, 118, 176, 223, 251, 412, 424
CviQI GTAC 1 cut(s) 187
EciI GGCGGA 1 cut(s) 416
Eco31I GGTCTC 1 cut(s) 509
Eco88I CYCGRG 1 cut(s) 71
EcoRII CCWGG 2 cut(s) 77, 274
Esp3I CGTCTC 1 cut(s) 441
FaeI CATG 3 cut(s) 60, 151, 365
FaqI GGGAC 1 cut(s) 139
FatI CATG 3 cut(s) 56, 147, 361
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 2 cut(s) 145, 416
Fsp4HI GCNGC 1 cut(s) 9
FspBI CTAG 3 cut(s) 215, 486, 544
GlaI GCGC 2 cut(s) 17, 146
GluI GCNGC 1 cut(s) 9
GsaI CCCAGC 1 cut(s) 428
GsuI CTGGAG 1 cut(s) 434
HaeII RGCGCY 1 cut(s) 19
HaeIII GGCC 1 cut(s) 223
HhaI GCGC 2 cut(s) 18, 147
Hin1II CATG 3 cut(s) 60, 151, 365
Hin6I GCGC 2 cut(s) 16, 145
HinP1I GCGC 2 cut(s) 16, 145
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 2 cut(s) 74, 316
HpaI GTTAAC 1 cut(s) 195
HphI GGTGA 2 cut(s) 47, 440
Hpy166II GTNNAC 2 cut(s) 187, 195
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 1 cut(s) 362
Hpy8I GTNNAC 2 cut(s) 187, 195
HpyAV CCTTC 3 cut(s) 29, 277, 335
HpyCH4III ACNGT 2 cut(s) 238, 440
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 3 cut(s) 11, 245, 296
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 3 cut(s) 60, 151, 365
HspAI GCGC 2 cut(s) 16, 145
KspAI GTTAAC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 421
MaeI CTAG 3 cut(s) 215, 486, 544
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 232
MboII GAAGA 1 cut(s) 464
MhlI GDGCHC 1 cut(s) 327
MluCI AATT 3 cut(s) 46, 135, 380
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 2 cut(s) 82, 517
MseI TTAA 4 cut(s) 84, 194, 303, 378
MspR9I CCNGG 2 cut(s) 79, 276
Mva1269I GAATGC 1 cut(s) 275
MvaI CCWGG 2 cut(s) 79, 276
MvnI CGCG 1 cut(s) 145
NlaIII CATG 3 cut(s) 60, 151, 365
NlaIV GGNNCC 1 cut(s) 324
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 1 cut(s) 151
PaeI GCATGC 1 cut(s) 151
PagI TCATGA 1 cut(s) 361
PctI GAATGC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp6I CCWGG 2 cut(s) 77, 274
PspFI CCCAGC 1 cut(s) 424
PspGI CCWGG 2 cut(s) 77, 274
PspN4I GGNNCC 1 cut(s) 324
PstI CTGCAG 1 cut(s) 298
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SaqAI TTAA 4 cut(s) 84, 194, 303, 378
SatI GCNGC 1 cut(s) 9
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 2 cut(s) 79, 276
SduI GDGCHC 1 cut(s) 327
SetI ASST 8 cut(s) 10, 83, 102, 170, 178, 253, 426, 528
SfcI CTRYAG 1 cut(s) 294
SpeI ACTAGT 1 cut(s) 485
SphI GCATGC 1 cut(s) 151
Sse9I AATT 3 cut(s) 46, 135, 380
SsiI CCGC 1 cut(s) 401
SspMI CTAG 3 cut(s) 215, 486, 544
StyD4I CCNGG 2 cut(s) 77, 274
TaaI ACNGT 2 cut(s) 238, 440
TaiI ACGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 96
TasI AATT 3 cut(s) 46, 135, 380
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 4 cut(s) 84, 194, 303, 378
Tru9I TTAA 4 cut(s) 84, 194, 303, 378
TscAI CASTG 1 cut(s) 443
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 4 cut(s) 282, 378, 387, 405
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 1 cut(s) 443
XapI RAATTY 1 cut(s) 380
XceI RCATGY 1 cut(s) 151
XspI CTAG 3 cut(s) 215, 486, 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.