Rh3DG012500

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000189
Physical Location & Seq
Forward (+)
736138 .. 736877
740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG012500.1

Sequence Viewer

Length: 408 bp
ATGCAGCACATGCTGTCCCCATCCACAACGTATAAAGCTTATCTGGTGTACAAGTTAACTAAACGCACTTATGGACTAGACTGGCCTGCCGTGGTCAAAGTTGGTGCAAGAGCTTATGGATTTGATTATGAATGCCCTGGTTTGAAGGAAATGACTACAGGCATTAAGCACACTGCGATTCTGGTGCCCCAAAGAAAAATACAAGGACATCTCGCAAGACATCATGAAATCAATGAAGTTAGATTTCCAAATGAAAGCAGGGCGGATGGGTGGCTGGAGATGGAGCTGGGTGAGTTTCACTGTCAAGGAGACGAAGACGTGAAGTTGGAAATGATTTGTTGTGAGACTAGTTTGGGTAAGAGTGGTCTCCTTGTTCAAGGGATTGAGGTTAGACCAAAAAGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

135

Amino Acids

15.39

Weight (kDa)

7.71

Isoelectric Point (pI)

32.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 3 - 132 5.9e-20 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AciI CCGC 1 cut(s) 263
AfaI GTAC 1 cut(s) 50
AgsI TTSAA 2 cut(s) 145, 377
AhlI ACTAGT 1 cut(s) 347
AjiI CACGTC 1 cut(s) 319
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 3 cut(s) 38, 113, 286
AluI AGCT 3 cut(s) 38, 113, 286
Alw26I GTCTC 3 cut(s) 303, 338, 371
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 302
BaeGI GKGCMC 1 cut(s) 189
BanI GGYRCC 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 16
BccI CCATC 3 cut(s) 28, 260, 274
BceAI ACGGC 1 cut(s) 74
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 1 cut(s) 138
BcoDI GTCTC 3 cut(s) 303, 338, 371
BcuI ACTAGT 1 cut(s) 347
BfaI CTAG 3 cut(s) 77, 348, 406
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 138
BmgBI CACGTC 1 cut(s) 319
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 296
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 2 cut(s) 90, 136
Bse1I ACTGG 1 cut(s) 86
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 90, 136
BseGI GGATG 2 cut(s) 20, 271
BseNI ACTGG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 1 cut(s) 16
BseYI CCCAGC 1 cut(s) 286
BshFI GGCC 1 cut(s) 85
BshNI GGYRCC 1 cut(s) 184
BsmAI GTCTC 3 cut(s) 303, 338, 371
BsmBI CGTCTC 1 cut(s) 303
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 1 cut(s) 85
Bso31I GGTCTC 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 189
Bsp1407I TGTACA 1 cut(s) 48
Bsp143I GATC 1 cut(s) 402
BspACI CCGC 1 cut(s) 263
BspANI GGCC 1 cut(s) 85
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 184
BspTNI GGTCTC 1 cut(s) 371
BsrGI TGTACA 1 cut(s) 48
BsrI ACTGG 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 90, 136
BssMI GATC 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 302
BstAPI GCANNNNNTGC 1 cut(s) 10
BstAUI TGTACA 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 87
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 20, 271
BstKTI GATC 1 cut(s) 405
BstMAI GTCTC 3 cut(s) 303, 338, 371
BstMBI GATC 1 cut(s) 402
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 136
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 402
BstYI RGATCY 1 cut(s) 402
BsuRI GGCC 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 90
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 2 cut(s) 20, 271
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 171, 298
Cac8I GCNNGC 1 cut(s) 87
CciI TCATGA 1 cut(s) 223
Csp6I GTAC 1 cut(s) 49
CviAII CATG 2 cut(s) 10, 224
CviJI RGCY 5 cut(s) 38, 85, 113, 274, 286
CviKI_1 RGCY 5 cut(s) 38, 85, 113, 274, 286
CviQI GTAC 1 cut(s) 49
DpnI GATC 1 cut(s) 404
DpnII GATC 1 cut(s) 402
EciI GGCGGA 1 cut(s) 278
Eco31I GGTCTC 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 136
Esp3I CGTCTC 1 cut(s) 303
FaeI CATG 2 cut(s) 13, 227
FaiI YATR 6 cut(s) 11, 33, 72, 117, 129, 225
FatI CATG 2 cut(s) 9, 223
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 2 cut(s) 7, 278
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 3 cut(s) 77, 348, 406
GluI GCNGC 1 cut(s) 5
GsaI CCCAGC 1 cut(s) 290
GsuI CTGGAG 1 cut(s) 296
HaeIII GGCC 1 cut(s) 85
Hin1II CATG 2 cut(s) 13, 227
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 1 cut(s) 178
HpaI GTTAAC 1 cut(s) 57
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 2 cut(s) 49, 57
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 2 cut(s) 49, 57
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4IV ACGT 2 cut(s) 29, 318
HpyCH4V TGCA 2 cut(s) 4, 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpySE526I ACGT 2 cut(s) 29, 318
Hsp92II CATG 2 cut(s) 13, 227
KspAI GTTAAC 1 cut(s) 57
Kzo9I GATC 1 cut(s) 402
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 3 cut(s) 77, 348, 406
MaeII ACGT 2 cut(s) 29, 318
MalI GATC 1 cut(s) 404
MboI GATC 1 cut(s) 402
MboII GAAGA 1 cut(s) 326
MflI RGATCY 1 cut(s) 402
MhlI GDGCHC 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 1 cut(s) 379
MseI TTAA 2 cut(s) 56, 165
MspR9I CCNGG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 137
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 402
NlaIII CATG 2 cut(s) 13, 227
NlaIV GGNNCC 1 cut(s) 186
NspI RCATGY 1 cut(s) 13
PagI TCATGA 1 cut(s) 223
PctI GAATGC 1 cut(s) 137
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 286
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 186
PsuI RGATCY 1 cut(s) 402
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SaqAI TTAA 2 cut(s) 56, 165
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 402
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 189
SetI ASST 6 cut(s) 32, 40, 115, 288, 321, 390
SfcI CTRYAG 1 cut(s) 156
SpeI ACTAGT 1 cut(s) 347
SsiI CCGC 1 cut(s) 263
SspMI CTAG 3 cut(s) 77, 348, 406
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 302
TaiI ACGT 2 cut(s) 32, 321
TatI WGTACW 1 cut(s) 48
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 2 cut(s) 56, 165
Tru9I TTAA 2 cut(s) 56, 165
TscAI CASTG 2 cut(s) 178, 305
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 4 cut(s) 144, 240, 249, 267
TspRI CASTG 2 cut(s) 178, 305
XceI RCATGY 1 cut(s) 13
XspI CTAG 3 cut(s) 77, 348, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.