Rmu_co8363919.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8363919.1
OG0000189
Physical Location & Seq
Forward (+)
1 .. 1093
1093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8363919.1_g000001.1.cds

Sequence Viewer

Length: 398 bp
agcttttcattggacaaatggagtggtaagaaatgttatatgatagcttcaaagggacttcggattgcttggggtgatactcctcgatattgggaatggatttctctgcccgagtccaggtttgaggaggttgctaagcttcgggtggttggttggtttgaaattcgtgggagaattgctactcgcatgctttctccatccactctatataaagcttatcttgtgtacaagtttaatgaacgcccatggacgtttgacaaccatcccacggcggtggccgtttccgcaaggtcttatggctttgattacgaatgcccgagtttgagtgaaatggttgaaggaggagagctcaagtacactgcctttctggcgcagccggaaagagaaattagtgaaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

132

Amino Acids

15.38

Weight (kDa)

7.7

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 272, 285
AcoI YGGCCR 1 cut(s) 276
AcsI RAATTY 1 cut(s) 162
AfaI GTAC 2 cut(s) 227, 356
AfiI CCNNNNNNNGG 2 cut(s) 117, 268
AgsI TTSAA 3 cut(s) 51, 161, 338
AjnI CCWGG 1 cut(s) 116
AleI CACNNNNGTG 1 cut(s) 272
AluBI AGCT 5 cut(s) 3, 47, 139, 215, 349
AluI AGCT 5 cut(s) 3, 47, 139, 215, 349
Alw21I GWGCWC 1 cut(s) 351
Ama87I CYCGRG 2 cut(s) 110, 316
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 373
ApoI RAATTY 1 cut(s) 162
AspLEI GCGC 1 cut(s) 373
AsuHPI GGTGA 1 cut(s) 86
AvaI CYCGRG 2 cut(s) 110, 316
BanII GRGCYC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 385
BccI CCATC 2 cut(s) 205, 270
BceAI ACGGC 2 cut(s) 263, 285
BciT130I CCWGG 1 cut(s) 118
BglI GCCNNNNNGGC 1 cut(s) 368
BisI GCNGC 1 cut(s) 374
BlpI GCTNAGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 375
Bme1390I CCNGG 1 cut(s) 118
BmeT110I CYCGRG 2 cut(s) 110, 316
BmrFI CCNGG 1 cut(s) 118
BplI GAGNNNNNCTC 2 cut(s) 333, 365
Bpu1102I GCTNAGC 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 335
BsaJI CCNNGG 2 cut(s) 245, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 268
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 245, 267
BseGI GGATG 2 cut(s) 197, 262
BseLI CCNNNNNNNGG 2 cut(s) 117, 268
BseRI GAGGAG 3 cut(s) 72, 140, 357
BseXI GCAGC 1 cut(s) 385
BshFI GGCC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 351
BsiHKCI CYCGRG 2 cut(s) 110, 316
BsiSI CCGG 1 cut(s) 377
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 2 cut(s) 117, 268
BsmFI GGGAC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 317
BsnI GGCC 1 cut(s) 278
BsoBI CYCGRG 2 cut(s) 110, 316
Bsp1286I GDGCHC 1 cut(s) 351
Bsp1407I TGTACA 1 cut(s) 225
Bsp1720I GCTNAGC 1 cut(s) 135
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 2 cut(s) 272, 285
BspANI GGCC 1 cut(s) 278
BsrGI TGTACA 1 cut(s) 225
BssECI CCNNGG 2 cut(s) 245, 267
BssT1I CCWWGG 1 cut(s) 245
Bst2UI CCWGG 1 cut(s) 118
BstAUI TGTACA 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 1 cut(s) 135
BstDSI CCRYGG 2 cut(s) 245, 267
BstF5I GGATG 2 cut(s) 197, 262
BstHHI GCGC 1 cut(s) 373
BstMWI GCNNNNNNNGC 2 cut(s) 284, 368
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 385
BstXI CCANNNNNNTGG 1 cut(s) 274
BsuRI GGCC 1 cut(s) 278
BtgI CCRYGG 2 cut(s) 245, 267
BtsCI GGATG 2 cut(s) 197, 262
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 188
CfoI GCGC 1 cut(s) 373
Csp6I GTAC 2 cut(s) 226, 355
CspCI CAANNNNNGTGG 2 cut(s) 4, 39
CviAII CATG 2 cut(s) 187, 246
CviJI RGCY 8 cut(s) 3, 47, 139, 215, 278, 300, 349, 376
CviKI_1 RGCY 8 cut(s) 3, 47, 139, 215, 278, 300, 349, 376
CviQI GTAC 2 cut(s) 226, 355
DdeI CTNAG 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 276
Ecl136II GAGCTC 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 351
Eco53kI GAGCTC 1 cut(s) 349
Eco88I CYCGRG 2 cut(s) 110, 316
EcoICRI GAGCTC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 2 cut(s) 190, 249
FaiI YATR 7 cut(s) 39, 41, 188, 208, 210, 247, 297
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FaqI GGGAC 1 cut(s) 69
FatI CATG 2 cut(s) 186, 245
Fnu4HI GCNGC 1 cut(s) 374
FokI GGATG 2 cut(s) 184, 249
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 1 cut(s) 374
GlaI GCGC 1 cut(s) 372
GluI GCNGC 1 cut(s) 374
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 377
HhaI GCGC 1 cut(s) 373
Hin1II CATG 2 cut(s) 190, 249
Hin6I GCGC 1 cut(s) 371
HinP1I GCGC 1 cut(s) 371
HindIII AAGCTT 2 cut(s) 137, 213
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 377
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 226, 357
Hpy188I TCNGA 1 cut(s) 63
Hpy8I GTNNAC 2 cut(s) 226, 357
HpyAV CCTTC 1 cut(s) 332
HpyCH4IV ACGT 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 368
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 1 cut(s) 251
Hsp92II CATG 2 cut(s) 190, 249
HspAI GCGC 1 cut(s) 371
LpnPI CCDG 4 cut(s) 103, 130, 353, 390
Lsp1109I GCAGC 1 cut(s) 385
MaeII ACGT 1 cut(s) 251
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 3 cut(s) 162, 174, 387
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 4 cut(s) 93, 118, 121, 335
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 1 cut(s) 272
MspI CCGG 1 cut(s) 377
MspR9I CCNGG 1 cut(s) 118
Mva1269I GAATGC 1 cut(s) 317
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 284, 368
NcoI CCATGG 1 cut(s) 245
NlaIII CATG 2 cut(s) 190, 249
NspI RCATGY 1 cut(s) 190
OliI CACNNNNGTG 1 cut(s) 272
PaeI GCATGC 1 cut(s) 190
PctI GAATGC 1 cut(s) 317
PkrI GCNGC 1 cut(s) 375
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Psp124BI GAGCTC 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
RsaI GTAC 2 cut(s) 227, 356
RsaNI GTAC 2 cut(s) 226, 355
RseI CAYNNNNRTG 1 cut(s) 272
SacI GAGCTC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 374
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 351
SetI ASST 8 cut(s) 49, 122, 132, 141, 217, 254, 293, 351
SmiMI CAYNNNNRTG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SphI GCATGC 1 cut(s) 190
Sse9I AATT 3 cut(s) 162, 174, 387
SsiI CCGC 2 cut(s) 272, 285
SstI GAGCTC 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 245
TaiI ACGT 1 cut(s) 254
TaqI TCGA 1 cut(s) 85
TasI AATT 3 cut(s) 162, 174, 387
TatI WGTACW 2 cut(s) 225, 354
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 1 cut(s) 364
TseI GCWGC 1 cut(s) 373
TspDTI ATGAA 1 cut(s) 252
TspRI CASTG 1 cut(s) 364
XapI RAATTY 1 cut(s) 162
XceI RCATGY 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.