Rmu_sc0011979.1_g000006

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011979.1
OG0000189
Physical Location & Seq
Forward (+)
25957 .. 26233
277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011979.1_g000006.1.cds

Sequence Viewer

Length: 277 bp
atggagaacgcggcggtgatgatggacttgccggaaggctgcatagccaaagtgatcggcctaacaactcctggagacgcgtgcaggctgtcgttgacttcgacggatttcaagtcggcggcggactccgacgctgtttgggacaagttccttccgcctgataccagtgagatgctatcccgctccgaatctgcagtcgacgccaaatccaaaaaggagcttttcctcactctctctcacaaccccatcctcatcgacgatggcaagatggtaaaaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

92

Amino Acids

9.92

Weight (kDa)

4.64

Isoelectric Point (pI)

35.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 198
AccII CGCG 2 cut(s) 11, 80
AciI CCGC 6 cut(s) 11, 14, 119, 122, 155, 181
AcyI GRCGYC 1 cut(s) 201
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 1 cut(s) 112
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 69
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 39
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
AsuHPI GGTGA 1 cut(s) 28
BbvI GCAGC 1 cut(s) 26
BccI CCATC 4 cut(s) 16, 254, 254, 262
BciT130I CCWGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 3 cut(s) 12, 40, 120
BlsI GCNGC 3 cut(s) 13, 41, 121
Bme1390I CCNGG 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 26
BsgI GTGCAG 1 cut(s) 103
Bsh1236I CGCG 2 cut(s) 11, 80
BshFI GGCC 1 cut(s) 60
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 6 cut(s) 11, 14, 119, 122, 155, 181
BspANI GGCC 1 cut(s) 60
BspFNI CGCG 2 cut(s) 11, 80
BspMAI CTGCAG 1 cut(s) 196
BsrBI CCGCTC 1 cut(s) 183
BsrI ACTGG 1 cut(s) 165
BssMI GATC 1 cut(s) 54
BssNI GRCGYC 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 82, 86
BstF5I GGATG 1 cut(s) 246
BstFNI CGCG 2 cut(s) 11, 80
BstKTI GATC 1 cut(s) 57
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 192
BstUI CGCG 2 cut(s) 11, 80
BstV1I GCAGC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 2 cut(s) 82, 86
CseI GACGC 3 cut(s) 86, 140, 209
CviJI RGCY 5 cut(s) 39, 47, 60, 88, 220
CviKI_1 RGCY 5 cut(s) 39, 47, 60, 88, 220
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
EciI GGCGGA 2 cut(s) 137, 144
EcoRII CCWGG 1 cut(s) 70
Esp3I CGTCTC 1 cut(s) 69
FaiI YATR 1 cut(s) 44
FaqI GGGAC 1 cut(s) 155
FauI CCCGC 1 cut(s) 188
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 3 cut(s) 12, 40, 120
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 3 cut(s) 12, 40, 120
GluI GCNGC 3 cut(s) 12, 40, 120
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 1 cut(s) 60
HapII CCGG 1 cut(s) 32
HgaI GACGC 3 cut(s) 86, 140, 209
Hin1I GRCGYC 1 cut(s) 201
HincII GTYRAC 2 cut(s) 96, 199
HindII GTYRAC 2 cut(s) 96, 199
HinfI GANTC 2 cut(s) 125, 188
HpaII CCGG 1 cut(s) 32
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 96, 199
Hpy188I TCNGA 2 cut(s) 130, 187
Hpy8I GTNNAC 2 cut(s) 96, 199
Hpy99I CGWCG 4 cut(s) 106, 134, 203, 260
HpyAV CCTTC 2 cut(s) 29, 161
HpyCH4V TGCA 3 cut(s) 42, 84, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
Hsp92I GRCGYC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 54
LmnI GCTCC 2 cut(s) 188, 217
LpnPI CCDG 6 cut(s) 45, 57, 70, 84, 171, 178
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 1 cut(s) 162
MalI GATC 1 cut(s) 56
MbiI CCGCTC 1 cut(s) 183
MboI GATC 1 cut(s) 54
MluI ACGCGT 1 cut(s) 78
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 2 cut(s) 236, 260
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 72
MvnI CGCG 2 cut(s) 11, 80
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 98
PfeI GAWTC 1 cut(s) 188
PfoI TCCNGGA 1 cut(s) 70
PkrI GCNGC 3 cut(s) 13, 41, 121
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PstI CTGCAG 1 cut(s) 196
SalI GTCGAC 1 cut(s) 197
SatI GCNGC 3 cut(s) 12, 40, 120
Sau3AI GATC 1 cut(s) 54
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 72
SetI ASST 1 cut(s) 222
SfaNI GCATC 1 cut(s) 162
SfcI CTRYAG 1 cut(s) 192
SsiI CCGC 6 cut(s) 11, 14, 119, 122, 155, 181
StyD4I CCNGG 1 cut(s) 70
TaqI TCGA 3 cut(s) 101, 198, 255
TauI GCSGC 2 cut(s) 14, 122
TfiI GAWTC 1 cut(s) 188
TscAI CASTG 1 cut(s) 172
TseI GCWGC 1 cut(s) 39
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.