RchiOBHm_Chr3g0448471

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000189
Physical Location & Seq
Forward (+)
702975 .. 705600
2626 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41591

Sequence Viewer

Length: 675 bp
ATGGATATACATATAGTGATTGTCAAGGTTGATTTGCTAGGGCTAGCTGCCCTGTGTTATCTTCATGTTCTTGCACGTACCGGTGGATACATCTTTTCACTGGACAAATGGAGTGGGAAGAAGTGCTATATGATAGCTGCAAAGCGCCTTCGGATTGCATGGGGTGATACTCCTAATTATTGGACACGGAAATCTCTGCTTGAGTCCAGGTTTAAGGAGGCGGCCAAGCTTCATTTTGTATGCTGGCTTGAAATCCGTGGGAGAATTGAAACACACATGCTGTCCCCATCCACAACGTATAAAGCTTATCTGGTGTACAAGTTAACTAAACGCACTTATGGACTAGACTGGCCTGCCGTGGTCAAAGTTGGTGCAAGAGCTTATGGATTTGATTATGAATGCCCTGGTTTGAAGGAAATAACTACAGGTATTAAGCACACTGCGATTCTGGTGCCCCAAAGAAAAATACAAGGACATCTCGCAAGACATCATGAAATCAATGAAGTTAGATTTCCAAATGAAAGCAGGGCGGATGGGTGGCTGGAGATGGAGCTGGGTGAGTTTCACTGTCAAGGAGACGAAGACGTGAAGTTGGAAATGATTTGTTGTGAGACTAGTATGGGTAAGAGTGGTCTCCTTGTTCAAGGGATTGAGGTTAGACCAAAAAGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

224

Amino Acids

25.68

Weight (kDa)

9.1

Isoelectric Point (pI)

30.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 40 - 221 6.3e-46 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 451
AciI CCGC 2 cut(s) 221, 530
AcoI YGGCCR 1 cut(s) 222
AfaI GTAC 2 cut(s) 79, 317
AgeI ACCGGT 1 cut(s) 80
AgsI TTSAA 4 cut(s) 251, 269, 412, 644
AhlI ACTAGT 1 cut(s) 614
AjiI CACGTC 1 cut(s) 586
AjnI CCWGG 2 cut(s) 206, 403
AluBI AGCT 6 cut(s) 47, 137, 229, 305, 380, 553
AluI AGCT 6 cut(s) 47, 137, 229, 305, 380, 553
Alw26I GTCTC 3 cut(s) 570, 605, 638
AoxI GGCC 2 cut(s) 222, 350
ApeKI GCWGC 2 cut(s) 47, 137
AsiGI ACCGGT 1 cut(s) 80
AspLEI GCGC 1 cut(s) 147
AsuHPI GGTGA 2 cut(s) 176, 569
AsuNHI GCTAGC 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 456
BanI GGYRCC 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 588
BbvI GCAGC 2 cut(s) 34, 124
BccI CCATC 3 cut(s) 295, 527, 541
BceAI ACGGC 1 cut(s) 341
BcgI CGANNNNNNTGC 2 cut(s) 433, 467
BciT130I CCWGG 2 cut(s) 208, 405
BciVI GTATCC 1 cut(s) 80
BcoDI GTCTC 3 cut(s) 570, 605, 638
BcuI ACTAGT 1 cut(s) 614
BfaI CTAG 5 cut(s) 38, 44, 344, 615, 673
BfmI CTRYAG 1 cut(s) 423
BfoI RGCGCY 1 cut(s) 148
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 3 cut(s) 48, 138, 222
BlsI GCNGC 3 cut(s) 49, 139, 223
Bme1390I CCNGG 2 cut(s) 208, 405
BmgBI CACGTC 1 cut(s) 586
BmiI GGNNCC 1 cut(s) 453
BmrFI CCNGG 2 cut(s) 208, 405
BmtI GCTAGC 1 cut(s) 47
BpiI GAAGAC 1 cut(s) 588
BpmI CTGGAG 1 cut(s) 563
BpuEI CTTGAG 1 cut(s) 221
BsaAI YACGTR 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 638
BsaJI CCNNGG 3 cut(s) 256, 357, 403
BsaWI WCCGGW 1 cut(s) 80
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 105, 353
BseBI CCWGG 2 cut(s) 208, 405
BseDI CCNNGG 3 cut(s) 256, 357, 403
BseGI GGATG 2 cut(s) 287, 538
BseNI ACTGG 2 cut(s) 105, 353
BseSI GKGCMC 1 cut(s) 456
BseXI GCAGC 2 cut(s) 34, 124
BseYI CCCAGC 1 cut(s) 553
BshFI GGCC 2 cut(s) 224, 352
BshNI GGYRCC 1 cut(s) 451
BshTI ACCGGT 1 cut(s) 80
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 1 cut(s) 268
BsmAI GTCTC 3 cut(s) 570, 605, 638
BsmBI CGTCTC 1 cut(s) 570
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 2 cut(s) 224, 352
Bso31I GGTCTC 1 cut(s) 638
Bsp1286I GDGCHC 1 cut(s) 456
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 1 cut(s) 669
BspACI CCGC 2 cut(s) 221, 530
BspANI GGCC 2 cut(s) 224, 352
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 1 cut(s) 453
BspOI GCTAGC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 451
BspTNI GGTCTC 1 cut(s) 638
BsrFI RCCGGY 1 cut(s) 80
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 2 cut(s) 105, 353
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 3 cut(s) 256, 357, 403
BssMI GATC 1 cut(s) 669
Bst2UI CCWGG 2 cut(s) 208, 405
Bst4CI ACNGT 1 cut(s) 569
BstAUI TGTACA 1 cut(s) 315
BstBAI YACGTR 1 cut(s) 77
BstC8I GCNNGC 3 cut(s) 45, 245, 354
BstDSI CCRYGG 2 cut(s) 256, 357
BstF5I GGATG 2 cut(s) 287, 538
BstH2I RGCGCY 1 cut(s) 148
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 1 cut(s) 672
BstMAI GTCTC 3 cut(s) 570, 605, 638
BstMBI GATC 1 cut(s) 669
BstNI CCWGG 2 cut(s) 208, 405
BstNSI RCATGY 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 206, 403
BstSFI CTRYAG 1 cut(s) 423
BstSLI GKGCMC 1 cut(s) 456
BstV1I GCAGC 2 cut(s) 34, 124
BstV2I GAAGAC 1 cut(s) 588
BstX2I RGATCY 1 cut(s) 669
BstYI RGATCY 1 cut(s) 669
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 2 cut(s) 224, 352
BtgI CCRYGG 2 cut(s) 256, 357
BtrI CACGTC 1 cut(s) 586
BtsCI GGATG 2 cut(s) 287, 538
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 3 cut(s) 98, 438, 565
Cac8I GCNNGC 3 cut(s) 45, 245, 354
CciI TCATGA 1 cut(s) 490
CfoI GCGC 1 cut(s) 147
Cfr10I RCCGGY 1 cut(s) 80
Csp6I GTAC 2 cut(s) 78, 316
CspAI ACCGGT 1 cut(s) 80
CspCI CAANNNNNGTGG 2 cut(s) 94, 129
CviAII CATG 4 cut(s) 65, 159, 277, 491
CviQI GTAC 2 cut(s) 78, 316
DpnI GATC 1 cut(s) 671
DpnII GATC 1 cut(s) 669
EaeI YGGCCR 1 cut(s) 222
EciI GGCGGA 1 cut(s) 545
Eco31I GGTCTC 1 cut(s) 638
EcoRII CCWGG 2 cut(s) 206, 403
Esp3I CGTCTC 1 cut(s) 570
FaeI CATG 4 cut(s) 68, 162, 280, 494
FaqI GGGAC 1 cut(s) 268
FatI CATG 4 cut(s) 64, 158, 276, 490
Fnu4HI GCNGC 3 cut(s) 48, 138, 222
FokI GGATG 2 cut(s) 274, 545
Fsp4HI GCNGC 3 cut(s) 48, 138, 222
FspBI CTAG 5 cut(s) 38, 44, 344, 615, 673
GlaI GCGC 1 cut(s) 146
GluI GCNGC 3 cut(s) 48, 138, 222
GsaI CCCAGC 1 cut(s) 557
GsuI CTGGAG 1 cut(s) 563
HaeII RGCGCY 1 cut(s) 148
HaeIII GGCC 2 cut(s) 224, 352
HapII CCGG 1 cut(s) 81
HhaI GCGC 1 cut(s) 147
Hin1II CATG 4 cut(s) 68, 162, 280, 494
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HindIII AAGCTT 2 cut(s) 227, 303
HinfI GANTC 2 cut(s) 203, 445
HpaI GTTAAC 1 cut(s) 324
HpaII CCGG 1 cut(s) 81
HphI GGTGA 2 cut(s) 176, 569
Hpy166II GTNNAC 2 cut(s) 316, 324
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 491
Hpy8I GTNNAC 2 cut(s) 316, 324
HpyAV CCTTC 2 cut(s) 158, 406
HpyCH4III ACNGT 1 cut(s) 569
HpyCH4IV ACGT 3 cut(s) 76, 296, 585
HpyCH4V TGCA 4 cut(s) 74, 140, 158, 374
HpySE526I ACGT 3 cut(s) 76, 296, 585
Hsp92II CATG 4 cut(s) 68, 162, 280, 494
HspAI GCGC 1 cut(s) 145
KspAI GTTAAC 1 cut(s) 324
Kzo9I GATC 1 cut(s) 669
LmnI GCTCC 1 cut(s) 550
Lsp1109I GCAGC 2 cut(s) 34, 124
MaeI CTAG 5 cut(s) 38, 44, 344, 615, 673
MaeII ACGT 3 cut(s) 76, 296, 585
MalI GATC 1 cut(s) 671
MboI GATC 1 cut(s) 669
MboII GAAGA 3 cut(s) 53, 130, 593
MflI RGATCY 1 cut(s) 669
MhlI GDGCHC 1 cut(s) 456
MluCI AATT 2 cut(s) 175, 264
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 573
MnlI CCTC 2 cut(s) 211, 646
MseI TTAA 3 cut(s) 213, 323, 432
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 2 cut(s) 208, 405
Mva1269I GAATGC 1 cut(s) 404
MvaI CCWGG 2 cut(s) 208, 405
NdeII GATC 1 cut(s) 669
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 4 cut(s) 68, 162, 280, 494
NlaIV GGNNCC 1 cut(s) 453
NspI RCATGY 1 cut(s) 280
PagI TCATGA 1 cut(s) 490
PctI GAATGC 1 cut(s) 404
PfeI GAWTC 1 cut(s) 445
PinAI ACCGGT 1 cut(s) 80
PkrI GCNGC 3 cut(s) 49, 139, 223
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Ppu21I YACGTR 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 206, 403
PspFI CCCAGC 1 cut(s) 553
PspGI CCWGG 2 cut(s) 206, 403
PspN4I GGNNCC 1 cut(s) 453
PsuI RGATCY 1 cut(s) 669
RsaI GTAC 2 cut(s) 79, 317
RsaNI GTAC 2 cut(s) 78, 316
SaqAI TTAA 3 cut(s) 213, 323, 432
SatI GCNGC 3 cut(s) 48, 138, 222
Sau3AI GATC 1 cut(s) 669
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 2 cut(s) 208, 405
SduI GDGCHC 1 cut(s) 456
SfcI CTRYAG 1 cut(s) 423
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SpeI ACTAGT 1 cut(s) 614
Sse9I AATT 2 cut(s) 175, 264
SsiI CCGC 2 cut(s) 221, 530
SspMI CTAG 5 cut(s) 38, 44, 344, 615, 673
StyD4I CCNGG 2 cut(s) 206, 403
TaaI ACNGT 1 cut(s) 569
TaiI ACGT 3 cut(s) 79, 299, 588
TasI AATT 2 cut(s) 175, 264
TatI WGTACW 1 cut(s) 315
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 1 cut(s) 445
Tru1I TTAA 3 cut(s) 213, 323, 432
Tru9I TTAA 3 cut(s) 213, 323, 432
TscAI CASTG 3 cut(s) 105, 445, 572
TseI GCWGC 2 cut(s) 47, 137
TspDTI ATGAA 6 cut(s) 53, 221, 411, 507, 516, 534
TspGWI ACGGA 2 cut(s) 202, 245
TspRI CASTG 3 cut(s) 105, 445, 572
XceI RCATGY 1 cut(s) 280
XspI CTAG 5 cut(s) 38, 44, 344, 615, 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.