Rmu_sc0005298.1_g000008

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005298.1
OG0000189
Physical Location & Seq
Reverse (-)
40800 .. 42316
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005298.1_g000008.1.cds

Sequence Viewer

Length: 993 bp
atggatctgcagcagttgccggaggtttgcgttgccaacatcgtatcgttgacgactcccgaagatgccttccgcctgtcgttgctctctaagatgttcaagtcagcggcggaatccgacgccgtttgggacaggttcattccgcctgagacacccgagatcctgtccgagtccggcgaatctggattattggccgccaaatccaagaaggagctttacctcgctctctgcaacaaacgtttcctcatcgacgacggtaaattgagcttttcactggacaaacggagtgggaaaaaatgttacatgatatctgcaagagagcttggtattatctggggcgatgctccccagtattggagatggacttctcatcctgaatccaggtttcaggaggtggctgagcttcttgatgtttgctggcttgaaatcaatgggaaacttgaaacacgcgtgctgtccccatcgactctgtacaaagcttacctttcgttcaagtttactccagaggcttatggatttaaacatctgcctgcggaggtcactataggtctggagggaggagaacataatgcagaaggagagagcgatgataccgaaggagatagcgatgactctaaaggactgagtgaagatgcggacggagagagcaaagacaccgaattagagagtgacgagacccaaggaaaaagtgacggtgccaaaggggagacctgtgacaccgaagtgcctaaagtagtgttcaatgacgaccgataccagacggaggatagataccagagggagagatccgggttgtcggagattgagctgtgtgatcgatcccagtgggaccgataccagatggagagacccgggtggttggagattgagctgggtgagtttttttgtgaagggggagaagatgggctgttgaaaatgcgttgtttggcccgggggggggtggtcattggaagagtggtcttattgttcaaggcattgaggtcagacctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

330

Amino Acids

37.13

Weight (kDa)

4.59

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 695
AccII CGCG 1 cut(s) 450
AciI CCGC 7 cut(s) 73, 107, 110, 143, 195, 533, 635
AclI AACGTT 1 cut(s) 238
AclWI GGATC 4 cut(s) 12, 154, 780, 813
AcoI YGGCCR 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 4 cut(s) 354, 763, 936, 937
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 7 cut(s) 100, 425, 443, 493, 742, 913, 970
AjnI CCWGG 1 cut(s) 380
AleI CACNNNNGTG 1 cut(s) 722
AluBI AGCT 7 cut(s) 214, 267, 322, 403, 479, 808, 871
AluI AGCT 7 cut(s) 214, 267, 322, 403, 479, 808, 871
Alw26I GTCTC 4 cut(s) 143, 668, 701, 841
AlwI GGATC 4 cut(s) 12, 154, 780, 813
Ama87I CYCGRG 3 cut(s) 155, 851, 930
AoxI GGCC 2 cut(s) 192, 927
ApeKI GCWGC 1 cut(s) 10
AspS9I GGNCC 2 cut(s) 829, 928
AsuC2I CCSGG 5 cut(s) 790, 852, 853, 931, 932
AsuHPI GGTGA 1 cut(s) 887
AvaI CYCGRG 3 cut(s) 155, 851, 930
AvaII GGWCC 1 cut(s) 829
BanI GGYRCC 1 cut(s) 695
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BbvI GCAGC 1 cut(s) 22
BccI CCATC 4 cut(s) 354, 469, 835, 896
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 382
BcnI CCSGG 5 cut(s) 790, 852, 853, 931, 932
BcoDI GTCTC 4 cut(s) 143, 668, 701, 841
BfmI CTRYAG 2 cut(s) 8, 543
BisI GCNGC 3 cut(s) 11, 108, 195
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 3 cut(s) 12, 109, 196
Bme1390I CCNGG 6 cut(s) 382, 790, 852, 853, 931, 932
Bme18I GGWCC 1 cut(s) 829
BmeT110I CYCGRG 3 cut(s) 155, 851, 930
BmgT120I GGNCC 2 cut(s) 829, 928
BmiI GGNNCC 2 cut(s) 697, 830
BmrFI CCNGG 6 cut(s) 382, 790, 852, 853, 931, 932
BmrI ACTGGG 2 cut(s) 343, 817
BmsI GCATC 3 cut(s) 55, 331, 622
BmuI ACTGGG 2 cut(s) 343, 817
BpmI CTGGAG 2 cut(s) 486, 572
Bpu1102I GCTNAGC 1 cut(s) 399
BpuMI CCSGG 5 cut(s) 790, 852, 853, 931, 932
Bsa29I ATCGAT 1 cut(s) 817
BsaHI GRCGYC 1 cut(s) 120
BsaI GGTCTC 3 cut(s) 668, 701, 841
BsaJI CCNNGG 4 cut(s) 679, 851, 930, 931
Bsc4I CCNNNNNNNGG 4 cut(s) 354, 763, 936, 937
Bse1I ACTGG 3 cut(s) 279, 349, 823
BseBI CCWGG 1 cut(s) 382
BseCI ATCGAT 1 cut(s) 817
BseDI CCNNGG 4 cut(s) 679, 851, 930, 931
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 4 cut(s) 354, 763, 936, 937
BseMII CTCAG 3 cut(s) 138, 390, 614
BseNI ACTGG 3 cut(s) 279, 349, 823
BseRI GAGGAG 1 cut(s) 573
BseXI GCAGC 1 cut(s) 22
BseYI CCCAGC 1 cut(s) 871
Bsh1236I CGCG 1 cut(s) 450
Bsh1285I CGRYCG 1 cut(s) 751
BshFI GGCC 2 cut(s) 194, 929
BshNI GGYRCC 1 cut(s) 695
BshVI ATCGAT 1 cut(s) 817
BsiEI CGRYCG 1 cut(s) 751
BsiHKCI CYCGRG 3 cut(s) 155, 851, 930
BsiSI CCGG 5 cut(s) 20, 174, 789, 852, 931
BslFI GGGAC 3 cut(s) 143, 442, 842
BslI CCNNNNNNNGG 4 cut(s) 354, 763, 936, 937
BsmAI GTCTC 4 cut(s) 143, 668, 701, 841
BsmFI GGGAC 3 cut(s) 143, 442, 842
BsnI GGCC 2 cut(s) 194, 929
Bso31I GGTCTC 3 cut(s) 668, 701, 841
BsoBI CYCGRG 3 cut(s) 155, 851, 930
Bsp1407I TGTACA 1 cut(s) 471
Bsp143I GATC 5 cut(s) 4, 159, 785, 814, 818
Bsp1720I GCTNAGC 1 cut(s) 399
BspACI CCGC 7 cut(s) 73, 107, 110, 143, 195, 533, 635
BspANI GGCC 2 cut(s) 194, 929
BspCNI CTCAG 3 cut(s) 139, 391, 615
BspDI ATCGAT 1 cut(s) 817
BspFNI CGCG 1 cut(s) 450
BspLI GGNNCC 2 cut(s) 697, 830
BspMAI CTGCAG 1 cut(s) 12
BspPI GGATC 4 cut(s) 12, 154, 780, 813
BspT107I GGYRCC 1 cut(s) 695
BspTNI GGTCTC 3 cut(s) 668, 701, 841
BsrGI TGTACA 1 cut(s) 471
BsrI ACTGG 3 cut(s) 279, 349, 823
BssECI CCNNGG 4 cut(s) 679, 851, 930, 931
BssMI GATC 5 cut(s) 4, 159, 785, 814, 818
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 679
Bst2UI CCWGG 1 cut(s) 382
Bst4CI ACNGT 2 cut(s) 257, 695
Bst6I CTCTTC 1 cut(s) 946
BstACI GRCGYC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 16
BstAUI TGTACA 1 cut(s) 471
BstC8I GCNNGC 3 cut(s) 419, 452, 531
BstDEI CTNAG 4 cut(s) 90, 147, 399, 623
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 1 cut(s) 450
BstKTI GATC 5 cut(s) 7, 162, 788, 817, 821
BstMAI GTCTC 4 cut(s) 143, 668, 701, 841
BstMBI GATC 5 cut(s) 4, 159, 785, 814, 818
BstMCI CGRYCG 1 cut(s) 751
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 1 cut(s) 382
BstSCI CCNGG 6 cut(s) 380, 788, 850, 851, 929, 930
BstSFI CTRYAG 2 cut(s) 8, 543
BstUI CGCG 1 cut(s) 450
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 3 cut(s) 4, 159, 785
BstYI RGATCY 3 cut(s) 4, 159, 785
Bsu15I ATCGAT 1 cut(s) 817
BsuRI GGCC 2 cut(s) 194, 929
BsuTUI ATCGAT 1 cut(s) 817
BtgZI GCGATG 3 cut(s) 354, 600, 621
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 2 cut(s) 272, 830
Cac8I GCNNGC 3 cut(s) 419, 452, 531
Cfr13I GGNCC 2 cut(s) 829, 928
Cfr9I CCCGGG 2 cut(s) 851, 930
ClaI ATCGAT 1 cut(s) 817
CseI GACGC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 472
CspCI CAANNNNNGTGG 2 cut(s) 268, 303
CviAII CATG 1 cut(s) 304
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 4 cut(s) 90, 147, 399, 623
DpnI GATC 5 cut(s) 6, 161, 787, 816, 820
DpnII GATC 5 cut(s) 4, 159, 785, 814, 818
DraI TTTAAA 1 cut(s) 520
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 946
EarI CTCTTC 1 cut(s) 946
EciI GGCGGA 3 cut(s) 62, 125, 132
Eco130I CCWWGG 1 cut(s) 679
Eco31I GGTCTC 3 cut(s) 668, 701, 841
Eco32I GATATC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 829
Eco88I CYCGRG 3 cut(s) 155, 851, 930
EcoRII CCWGG 1 cut(s) 380
EcoRV GATATC 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 679
ErhI CCWWGG 1 cut(s) 679
FaeI CATG 1 cut(s) 307
FaiI YATR 5 cut(s) 305, 513, 545, 567, 991
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 3 cut(s) 143, 442, 842
FatI CATG 1 cut(s) 303
Fnu4HI GCNGC 3 cut(s) 11, 108, 195
FokI GGATG 1 cut(s) 357
Fsp4HI GCNGC 3 cut(s) 11, 108, 195
GluI GCNGC 3 cut(s) 11, 108, 195
GsaI CCCAGC 1 cut(s) 875
GsuI CTGGAG 2 cut(s) 486, 572
HaeIII GGCC 2 cut(s) 194, 929
HapII CCGG 5 cut(s) 20, 174, 789, 852, 931
HgaI GACGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 1 cut(s) 307
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 477
HinfI GANTC 7 cut(s) 55, 113, 170, 179, 377, 466, 611
HpaII CCGG 5 cut(s) 20, 174, 789, 852, 931
HphI GGTGA 1 cut(s) 887
Hpy166II GTNNAC 2 cut(s) 51, 498
Hpy188I TCNGA 4 cut(s) 118, 169, 799, 985
Hpy188III TCNNGA 7 cut(s) 59, 183, 374, 389, 407, 503, 551
Hpy8I GTNNAC 2 cut(s) 51, 498
Hpy99I CGWCG 3 cut(s) 122, 254, 257
HpyAV CCTTC 5 cut(s) 79, 202, 569, 590, 884
HpyCH4III ACNGT 2 cut(s) 257, 695
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 4 cut(s) 10, 231, 314, 572
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 4 cut(s) 90, 147, 399, 623
HpySE526I ACGT 1 cut(s) 238
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 1 cut(s) 307
Kzo9I GATC 5 cut(s) 4, 159, 785, 814, 818
LmnI GCTCC 2 cut(s) 211, 349
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 3 cut(s) 55, 331, 622
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 5 cut(s) 299, 538, 668, 689, 713
MalI GATC 5 cut(s) 6, 161, 787, 816, 820
MboI GATC 5 cut(s) 4, 159, 785, 814, 818
MboII GAAGA 4 cut(s) 74, 641, 911, 963
MflI RGATCY 3 cut(s) 4, 159, 785
MluCI AATT 2 cut(s) 260, 659
MluI ACGCGT 1 cut(s) 448
MlyI GAGTC 4 cut(s) 49, 179, 460, 605
MmeI TCCRAC 3 cut(s) 141, 777, 840
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 1 cut(s) 722
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 5 cut(s) 20, 174, 789, 852, 931
MspR9I CCNGG 6 cut(s) 382, 790, 852, 853, 931, 932
MvaI CCWGG 1 cut(s) 382
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 16
NciI CCSGG 5 cut(s) 790, 852, 853, 931, 932
NdeII GATC 5 cut(s) 4, 159, 785, 814, 818
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 2 cut(s) 697, 830
NmuCI GTSAC 4 cut(s) 538, 668, 689, 713
OliI CACNNNNGTG 1 cut(s) 722
PfeI GAWTC 3 cut(s) 113, 179, 377
PkrI GCNGC 3 cut(s) 12, 109, 196
PleI GAGTC 4 cut(s) 49, 178, 460, 605
PpsI GAGTC 4 cut(s) 49, 178, 460, 605
Psp1406I AACGTT 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 380
PspFI CCCAGC 1 cut(s) 871
PspGI CCWGG 1 cut(s) 380
PspN4I GGNNCC 2 cut(s) 697, 830
PspPI GGNCC 2 cut(s) 829, 928
PstI CTGCAG 1 cut(s) 12
PsuI RGATCY 3 cut(s) 4, 159, 785
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
RseI CAYNNNNRTG 1 cut(s) 722
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 3 cut(s) 11, 108, 195
Sau3AI GATC 5 cut(s) 4, 159, 785, 814, 818
Sau96I GGNCC 2 cut(s) 829, 928
SchI GAGTC 4 cut(s) 49, 179, 460, 605
ScrFI CCNGG 6 cut(s) 382, 790, 852, 853, 931, 932
SfaNI GCATC 3 cut(s) 55, 331, 622
SfcI CTRYAG 2 cut(s) 8, 543
SinI GGWCC 1 cut(s) 829
SmaI CCCGGG 2 cut(s) 853, 932
SmiMI CAYNNNNRTG 1 cut(s) 722
Sse9I AATT 2 cut(s) 260, 659
SsiI CCGC 7 cut(s) 73, 107, 110, 143, 195, 533, 635
StyD4I CCNGG 6 cut(s) 380, 788, 850, 851, 929, 930
StyI CCWWGG 1 cut(s) 679
TaaI ACNGT 2 cut(s) 257, 695
TaiI ACGT 1 cut(s) 241
TaqI TCGA 3 cut(s) 249, 464, 817
TaqII GACCGA 2 cut(s) 765, 846
TasI AATT 2 cut(s) 260, 659
TatI WGTACW 1 cut(s) 471
TauI GCSGC 2 cut(s) 110, 197
TfiI GAWTC 3 cut(s) 113, 179, 377
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 2 cut(s) 279, 830
TseFI GTSAC 4 cut(s) 538, 668, 689, 713
TseI GCWGC 1 cut(s) 10
Tsp45I GTSAC 4 cut(s) 538, 668, 689, 713
TspDTI ATGAA 1 cut(s) 127
TspGWI ACGGA 3 cut(s) 298, 654, 776
TspMI CCCGGG 2 cut(s) 851, 930
TspRI CASTG 2 cut(s) 279, 830
VpaK11BI GGWCC 1 cut(s) 829
XmaI CCCGGG 2 cut(s) 851, 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.