RchiOBHm_Chr3g0450261

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000189
Physical Location & Seq
Forward (+)
1849365 .. 1851034
1670 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41760

Sequence Viewer

Length: 759 bp
ATGGATCTGCACCAGTTACCGGAGGGCTGCATAGCCAAGATAGTATCGTTGACGACTCCTGAAGATGCCTGCCGCCTGTCGTTGCTCTGTAAGATTTTCAAGTCTGCGGCGGAATCCGACGCCGTTTGGGACAAGTTCCTTCCGCCTGAGACACCCACGATCCTGTCCCAGTCCGGCGAATCTGGACTATTGGCCGCCAGTTCCAAGAAGGAGCTTTACCTCGCTCTCTGCAACAAACCTGTCCTCATCAACGACGGTAAATTGAGCTTTTCACTGGACAAATGGAGTGGGAAAAAATGTTACATGATATCTGCAAGAGAGCTTGGTATTGTCTGGGGCGATACTCCCCAGTATTGGAGATGGACTTCTCATCCTGAATCCAGGTTTCCGGAGGTGGCTGAGCTTCTTGTTGTTTGCTGGCTTGAAATCTATGGGAAACTTGAAACACGCTTGCTGACCCCATCGACTCTGTACAAAGCTTACCTTGTGTTCAAGTTTACTCGAAGGGCTTTTGGATTTGAACACGTACGTGCTGAGGTCACTATAGGTCTGGAGGGAGGAGAACAGAGTAAACAGACTCTGGTTTTTCCCAACGAAGGGGAGAGACCCGGGTGGTTGGAGATTGAGTTGGGTGAGTTTTTCTGTGAAGGGGGAGAAGATGGGCTGTTGAAATTGCATTGTTTGGCGAATGAGGCTAATAATGGGAGGAGCGGTCTTGTTGTTCAAGGCATTGAGGTCAGGCCTAAGAGGAACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

252

Amino Acids

28.23

Weight (kDa)

5.72

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 44 4.3e-06 F-box domain
PP2 PF14299 98 - 248 4.2e-48 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 711
AccIII TCCGGA 1 cut(s) 388
AciI CCGC 6 cut(s) 73, 107, 110, 143, 195, 711
AclWI GGATC 2 cut(s) 12, 154
AcoI YGGCCR 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 2 cut(s) 473, 528
AfiI CCNNNNNNNGG 4 cut(s) 19, 354, 596, 597
AflIII ACRYGT 1 cut(s) 523
AgsI TTSAA 7 cut(s) 100, 425, 443, 493, 521, 670, 725
AjnI CCWGG 1 cut(s) 380
AleI CACNNNNGTG 1 cut(s) 528
AluBI AGCT 5 cut(s) 214, 267, 322, 403, 479
AluI AGCT 5 cut(s) 214, 267, 322, 403, 479
Alw26I GTCTC 2 cut(s) 143, 598
AlwI GGATC 2 cut(s) 12, 154
AlwNI CAGNNNCTG 1 cut(s) 580
Ama87I CYCGRG 1 cut(s) 608
Aor13HI TCCGGA 1 cut(s) 388
AoxI GGCC 2 cut(s) 192, 740
ApeKI GCWGC 1 cut(s) 27
AsuC2I CCSGG 2 cut(s) 609, 610
AsuHPI GGTGA 1 cut(s) 644
AvaI CYCGRG 1 cut(s) 608
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BbvCI CCTCAGC 1 cut(s) 534
BbvI GCAGC 1 cut(s) 14
BccI CCATC 3 cut(s) 354, 469, 653
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 382
BcnI CCSGG 2 cut(s) 609, 610
BcoDI GTCTC 2 cut(s) 143, 598
BfaI CTAG 1 cut(s) 757
BfmI CTRYAG 1 cut(s) 543
BisI GCNGC 4 cut(s) 28, 73, 108, 195
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 4 cut(s) 29, 74, 109, 196
Bme1390I CCNGG 3 cut(s) 382, 609, 610
BmeT110I CYCGRG 1 cut(s) 608
BmrFI CCNGG 3 cut(s) 382, 609, 610
BmrI ACTGGG 2 cut(s) 163, 343
BmsI GCATC 1 cut(s) 55
BmuI ACTGGG 2 cut(s) 163, 343
BpmI CTGGAG 1 cut(s) 572
Bpu10I CCTNAGC 1 cut(s) 534
Bpu1102I GCTNAGC 1 cut(s) 399
BpuMI CCSGG 2 cut(s) 609, 610
BsaAI YACGTR 2 cut(s) 526, 530
BsaHI GRCGYC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 598
BsaJI CCNNGG 1 cut(s) 608
BsaWI WCCGGW 2 cut(s) 19, 388
BsaXI ACNNNNNCTCC 4 cut(s) 611, 641, 697, 727
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 354, 596, 597
Bse1I ACTGG 5 cut(s) 13, 169, 198, 279, 349
BseAI TCCGGA 1 cut(s) 388
BseBI CCWGG 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 608
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 4 cut(s) 19, 354, 596, 597
BseMII CTCAG 3 cut(s) 138, 390, 525
BseNI ACTGG 5 cut(s) 13, 169, 198, 279, 349
BseRI GAGGAG 2 cut(s) 573, 721
BseXI GCAGC 1 cut(s) 14
BshFI GGCC 2 cut(s) 194, 742
BsiHKCI CYCGRG 1 cut(s) 608
BsiSI CCGG 4 cut(s) 20, 174, 389, 609
BsiWI CGTACG 1 cut(s) 526
BslFI GGGAC 2 cut(s) 143, 151
BslI CCNNNNNNNGG 4 cut(s) 19, 354, 596, 597
BsmAI GTCTC 2 cut(s) 143, 598
BsmFI GGGAC 2 cut(s) 143, 151
BsnI GGCC 2 cut(s) 194, 742
Bso31I GGTCTC 1 cut(s) 598
BsoBI CYCGRG 1 cut(s) 608
Bsp13I TCCGGA 1 cut(s) 388
Bsp1407I TGTACA 1 cut(s) 471
Bsp143I GATC 2 cut(s) 4, 159
Bsp1720I GCTNAGC 1 cut(s) 399
BspACI CCGC 6 cut(s) 73, 107, 110, 143, 195, 711
BspANI GGCC 2 cut(s) 194, 742
BspCNI CTCAG 3 cut(s) 139, 391, 526
BspEI TCCGGA 1 cut(s) 388
BspPI GGATC 2 cut(s) 12, 154
BspTNI GGTCTC 1 cut(s) 598
BsrBI CCGCTC 1 cut(s) 711
BsrGI TGTACA 1 cut(s) 471
BsrI ACTGG 5 cut(s) 13, 169, 198, 279, 349
BssECI CCNNGG 1 cut(s) 608
BssMI GATC 2 cut(s) 4, 159
BssNI GRCGYC 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 382
Bst4CI ACNGT 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 120
BstAUI TGTACA 1 cut(s) 471
BstBAI YACGTR 2 cut(s) 526, 530
BstC8I GCNNGC 3 cut(s) 70, 419, 452
BstDEI CTNAG 4 cut(s) 147, 399, 534, 744
BstF5I GGATG 1 cut(s) 370
BstKTI GATC 2 cut(s) 7, 162
BstMAI GTCTC 2 cut(s) 143, 598
BstMBI GATC 2 cut(s) 4, 159
BstMWI GCNNNNNNNGC 1 cut(s) 692
BstNI CCWGG 1 cut(s) 382
BstSCI CCNGG 3 cut(s) 380, 607, 608
BstSFI CTRYAG 1 cut(s) 543
BstV1I GCAGC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 194, 742
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 1 cut(s) 272
Cac8I GCNNGC 3 cut(s) 70, 419, 452
CaiI CAGNNNCTG 1 cut(s) 580
Cfr9I CCCGGG 1 cut(s) 608
CseI GACGC 1 cut(s) 128
Csp6I GTAC 2 cut(s) 472, 527
CspCI CAANNNNNGTGG 2 cut(s) 268, 303
CviAII CATG 1 cut(s) 304
CviQI GTAC 2 cut(s) 472, 527
DdeI CTNAG 4 cut(s) 147, 399, 534, 744
DpnI GATC 2 cut(s) 6, 161
DpnII GATC 2 cut(s) 4, 159
EaeI YGGCCR 1 cut(s) 192
EciI GGCGGA 2 cut(s) 125, 132
Eco147I AGGCCT 1 cut(s) 742
Eco31I GGTCTC 1 cut(s) 598
Eco32I GATATC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 81
Eco88I CYCGRG 1 cut(s) 608
EcoRII CCWGG 1 cut(s) 380
EcoRV GATATC 1 cut(s) 309
FaeI CATG 1 cut(s) 307
FaiI YATR 4 cut(s) 32, 305, 432, 545
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 2 cut(s) 143, 151
FatI CATG 1 cut(s) 303
Fnu4HI GCNGC 4 cut(s) 28, 73, 108, 195
FokI GGATG 1 cut(s) 357
Fsp4HI GCNGC 4 cut(s) 28, 73, 108, 195
FspBI CTAG 1 cut(s) 757
GluI GCNGC 4 cut(s) 28, 73, 108, 195
GsuI CTGGAG 1 cut(s) 572
HaeIII GGCC 2 cut(s) 194, 742
HapII CCGG 4 cut(s) 20, 174, 389, 609
HgaI GACGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 1 cut(s) 307
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 477
HinfI GANTC 6 cut(s) 55, 113, 179, 377, 466, 577
HpaII CCGG 4 cut(s) 20, 174, 389, 609
HphI GGTGA 1 cut(s) 644
Hpy166II GTNNAC 3 cut(s) 51, 498, 572
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 5 cut(s) 59, 183, 374, 389, 551
Hpy8I GTNNAC 3 cut(s) 51, 498, 572
Hpy99I CGWCG 2 cut(s) 122, 257
HpyAV CCTTC 5 cut(s) 149, 202, 498, 590, 641
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 2 cut(s) 525, 529
HpyCH4V TGCA 5 cut(s) 10, 30, 231, 314, 676
HpyF10VI GCNNNNNNNGC 1 cut(s) 692
HpyF3I CTNAG 4 cut(s) 147, 399, 534, 744
HpySE526I ACGT 2 cut(s) 525, 529
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 1 cut(s) 307
Kpn2I TCCGGA 1 cut(s) 388
Kzo9I GATC 2 cut(s) 4, 159
LmnI GCTCC 2 cut(s) 211, 708
Lsp1109I GCAGC 1 cut(s) 14
LweI GCATC 1 cut(s) 55
MaeI CTAG 1 cut(s) 757
MaeII ACGT 2 cut(s) 525, 529
MaeIII GTNAC 3 cut(s) 15, 299, 538
MalI GATC 2 cut(s) 6, 161
MbiI CCGCTC 1 cut(s) 711
MboI GATC 2 cut(s) 4, 159
MboII GAAGA 2 cut(s) 74, 668
MflI RGATCY 1 cut(s) 4
MluCI AATT 2 cut(s) 260, 671
MlyI GAGTC 3 cut(s) 49, 460, 571
MmeI TCCRAC 2 cut(s) 141, 597
MroI TCCGGA 1 cut(s) 388
MslI CAYNNNNRTG 1 cut(s) 528
MspI CCGG 4 cut(s) 20, 174, 389, 609
MspR9I CCNGG 3 cut(s) 382, 609, 610
MvaI CCWGG 1 cut(s) 382
MwoI GCNNNNNNNGC 1 cut(s) 692
NciI CCSGG 2 cut(s) 609, 610
NdeII GATC 2 cut(s) 4, 159
NlaIII CATG 1 cut(s) 307
NmuCI GTSAC 1 cut(s) 538
OliI CACNNNNGTG 1 cut(s) 528
PceI AGGCCT 1 cut(s) 742
PfeI GAWTC 3 cut(s) 113, 179, 377
Pfl23II CGTACG 1 cut(s) 526
PkrI GCNGC 4 cut(s) 29, 74, 109, 196
PleI GAGTC 3 cut(s) 49, 460, 571
PpsI GAGTC 3 cut(s) 49, 460, 571
Ppu21I YACGTR 2 cut(s) 526, 530
Psp6I CCWGG 1 cut(s) 380
PspGI CCWGG 1 cut(s) 380
PspLI CGTACG 1 cut(s) 526
PstNI CAGNNNCTG 1 cut(s) 580
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 2 cut(s) 473, 528
RsaNI GTAC 2 cut(s) 472, 527
RseI CAYNNNNRTG 1 cut(s) 528
SatI GCNGC 4 cut(s) 28, 73, 108, 195
Sau3AI GATC 2 cut(s) 4, 159
SchI GAGTC 3 cut(s) 49, 460, 571
ScrFI CCNGG 3 cut(s) 382, 609, 610
SfaNI GCATC 1 cut(s) 55
SfcI CTRYAG 1 cut(s) 543
SmaI CCCGGG 1 cut(s) 610
SmiMI CAYNNNNRTG 1 cut(s) 528
Sse9I AATT 2 cut(s) 260, 671
SseBI AGGCCT 1 cut(s) 742
SsiI CCGC 6 cut(s) 73, 107, 110, 143, 195, 711
SspMI CTAG 1 cut(s) 757
StuI AGGCCT 1 cut(s) 742
StyD4I CCNGG 3 cut(s) 380, 607, 608
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 2 cut(s) 528, 532
TaqI TCGA 2 cut(s) 464, 502
TasI AATT 2 cut(s) 260, 671
TatI WGTACW 1 cut(s) 471
TauI GCSGC 3 cut(s) 75, 110, 197
TfiI GAWTC 3 cut(s) 113, 179, 377
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 1 cut(s) 27
Tsp45I GTSAC 1 cut(s) 538
TspMI CCCGGG 1 cut(s) 608
TspRI CASTG 1 cut(s) 279
XmaI CCCGGG 1 cut(s) 608
XspI CTAG 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.