RLG00000023974

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000189
Physical Location & Seq
Reverse (-)
30610885 .. 30611574
690 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023974

Sequence Viewer

Length: 435 bp
ATGGAGAACGCAGCGGTGATGATGGACTTGCAGGAGTTGCCGGAAGGCTGCATAGCCAACGTGATGTCGCTGACGACTCCTCAAGACGCGTGCAGACTATTGTTGAGTTCGAGGAATTTCAAGTCGGCGGCGGACTCCGATGCTGTTTGGGTCAAGTTCCTTCCGCATGAGACCAATGAGATCCTATCCCACTCCGAATCTGCAATCCACACCAAATCCAAGAAGGTGCTTTACTTCACTCTCTCTCACAACCCCATCCTCATCGACAATAGCAAGATGATGTTGCTCTACAAGCAAAAGAAGAGTCCCAAGGGCAACAGGGTTCTTGATCATCATTACTGTGTTGGGCAGTGCCGGCCCGATCTGATTTGTCGTCAACGAGGAGATGCTTGTCGCTGTGGTCATCATTACCGCCTTGAAATCCTATGCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

145

Amino Acids

16.36

Weight (kDa)

8.43

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 89
AciI CCGC 5 cut(s) 14, 128, 131, 164, 412
AclWI GGATC 1 cut(s) 175
AcsI RAATTY 1 cut(s) 115
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 2 cut(s) 121, 419
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 1 cut(s) 175
AoxI GGCC 1 cut(s) 356
ApeKI GCWGC 2 cut(s) 11, 48
ApoI RAATTY 1 cut(s) 115
ArsI GACNNNNNNTTYG 2 cut(s) 289, 321
AspS9I GGNCC 1 cut(s) 357
AsuHPI GGTGA 1 cut(s) 28
BarI GAAGNNNNNNTAC 2 cut(s) 215, 247
BbvI GCAGC 2 cut(s) 23, 35
BccI CCATC 2 cut(s) 16, 263
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 164
BisI GCNGC 3 cut(s) 12, 49, 129
BlsI GCNGC 3 cut(s) 13, 50, 130
BmgT120I GGNCC 1 cut(s) 357
BmsI GCATC 2 cut(s) 130, 376
BpuEI CTTGAG 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 309
Bse118I RCCGGY 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 1 cut(s) 255
BseRI GAGGAG 2 cut(s) 69, 396
BseXI GCAGC 2 cut(s) 23, 35
BsgI GTGCAG 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 1 cut(s) 358
BsiSI CCGG 2 cut(s) 41, 355
BslFI GGGAC 1 cut(s) 291
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 291
BsnI GGCC 1 cut(s) 358
Bso31I GGTCTC 1 cut(s) 164
Bsp143I GATC 3 cut(s) 180, 328, 361
BspACI CCGC 5 cut(s) 14, 128, 131, 164, 412
BspANI GGCC 1 cut(s) 358
BspFNI CGCG 1 cut(s) 89
BspPI GGATC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 354
BssAI RCCGGY 1 cut(s) 354
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 3 cut(s) 180, 328, 361
BssT1I CCWWGG 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 341
Bst6I CTCTTC 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 91, 356
BstF5I GGATG 1 cut(s) 255
BstFNI CGCG 1 cut(s) 89
BstKTI GATC 3 cut(s) 183, 331, 364
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 3 cut(s) 180, 328, 361
BstMWI GCNNNNNNNGC 3 cut(s) 37, 292, 355
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 2 cut(s) 23, 35
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BsuRI GGCC 1 cut(s) 358
BtsCI GGATG 1 cut(s) 255
BtsI GCAGTG 1 cut(s) 356
BtsIMutI CAGTG 1 cut(s) 356
Cac8I GCNNGC 2 cut(s) 91, 356
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 357
CseI GACGC 1 cut(s) 95
CviAII CATG 1 cut(s) 167
CviJI RGCY 3 cut(s) 48, 56, 358
CviKI_1 RGCY 3 cut(s) 48, 56, 358
DpnI GATC 3 cut(s) 182, 330, 363
DpnII GATC 3 cut(s) 180, 328, 361
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
EciI GGCGGA 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 309
FaeI CATG 1 cut(s) 170
FaiI YATR 3 cut(s) 53, 168, 427
FaqI GGGAC 1 cut(s) 291
FatI CATG 1 cut(s) 166
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 3 cut(s) 12, 49, 129
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 3 cut(s) 12, 49, 129
GluI GCNGC 3 cut(s) 12, 49, 129
HaeIII GGCC 1 cut(s) 358
HapII CCGG 2 cut(s) 41, 355
HgaI GACGC 1 cut(s) 95
Hin1II CATG 1 cut(s) 170
HincII GTYRAC 1 cut(s) 377
HindII GTYRAC 1 cut(s) 377
HinfI GANTC 4 cut(s) 76, 134, 197, 304
HpaII CCGG 2 cut(s) 41, 355
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 3 cut(s) 139, 196, 366
Hpy188III TCNNGA 2 cut(s) 83, 326
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 3 cut(s) 38, 170, 217
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 4 cut(s) 31, 51, 93, 203
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 292, 355
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 1 cut(s) 170
KroI GCCGGC 1 cut(s) 354
KroNI GCCGGC 1 cut(s) 356
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 3 cut(s) 180, 328, 361
LmnI GCTCC 1 cut(s) 434
LpnPI CCDG 4 cut(s) 17, 54, 304, 368
Lsp1109I GCAGC 2 cut(s) 23, 35
LweI GCATC 2 cut(s) 130, 376
MaeII ACGT 1 cut(s) 60
MalI GATC 3 cut(s) 182, 330, 363
MboI GATC 3 cut(s) 180, 328, 361
MboII GAAGA 1 cut(s) 313
MflI RGATCY 1 cut(s) 180
MluCI AATT 1 cut(s) 115
MluI ACGCGT 1 cut(s) 87
MlyI GAGTC 3 cut(s) 70, 128, 313
MnlI CCTC 4 cut(s) 90, 105, 269, 374
MroNI GCCGGC 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 2 cut(s) 41, 355
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 3 cut(s) 37, 292, 355
NaeI GCCGGC 1 cut(s) 356
NdeII GATC 3 cut(s) 180, 328, 361
NgoMIV GCCGGC 1 cut(s) 354
NlaIII CATG 1 cut(s) 170
PdiI GCCGGC 1 cut(s) 356
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 3 cut(s) 13, 50, 130
PleI GAGTC 3 cut(s) 70, 128, 312
PpsI GAGTC 3 cut(s) 70, 128, 312
PspPI GGNCC 1 cut(s) 357
PsuI RGATCY 1 cut(s) 180
RseI CAYNNNNRTG 1 cut(s) 339
SatI GCNGC 3 cut(s) 12, 49, 129
Sau3AI GATC 3 cut(s) 180, 328, 361
Sau96I GGNCC 1 cut(s) 357
SchI GAGTC 3 cut(s) 70, 128, 313
SetI ASST 2 cut(s) 63, 228
SfaNI GCATC 2 cut(s) 130, 376
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 1 cut(s) 115
SsiI CCGC 5 cut(s) 14, 128, 131, 164, 412
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 1 cut(s) 63
TaqI TCGA 2 cut(s) 110, 264
TasI AATT 1 cut(s) 115
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 197
TscAI CASTG 1 cut(s) 356
TseI GCWGC 2 cut(s) 11, 48
TspRI CASTG 1 cut(s) 356
XapI RAATTY 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.