Rw2G004010

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000189
Physical Location & Seq
Forward (+)
3774415 .. 3775394
980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G004010.1

Sequence Viewer

Length: 915 bp
ATGAAGAAGAAGAGAAACAGAGTGACGGAGAAGGTGAAGAAGAACTCAGAGAAGAAGGAGGAATCACCTGCGACGGAGATGCAGCAACAGCCACTGCTGGACTTGCAAGCTTTGCCGGAAGGATGCATAGCCCACGTAATCTCGTTGACAAGTCCTCCAGATGCATGCAGGCTCTCCTCGCTTTCTAAGGCTATCAGGTCAGCGGCTGAATCCGACGCCGTTTGGGAGAAGTTCATTCCGAAGGAGCTCTACATGGCTCGGTGCGACACCCCCGTCCTCATTGACGAGGGCTACACGAGCTTTTCACTAGACAAATGGAGTGGGAAGGAGTGCTATATGATAGCTGCAAAGCGCCTTCGGATTGCTTGGGGTGATACTCGTCGATATTGGAGATGGAAATCTCTGACTCAGTCCAGGTTTAAGGAGGTGGCCGAGCTTCGTGTCGTATGTTGGCTTGAAATCCGTGGGAGAATTGAAACGCGCATGCTGTCCCCATCCACGACTTATAAAGCTTATCTGGTGTACAAGTTAATTGAAAGCACTGAACGAGACTGGGCCTGTGAGCCTGTCGTGGTCACAGTAGGTGCAAGAGCTTATGGGTTTGATTATGAGTGCCCTGGTTTGAAGGAAATAACTGCAGGCATTAAGCACACTGCGTTTCTGGGCCCCAAAGAGAAATACAAGCACAGGCTGCACAGCAAAGGGAAATACAAGCACAGTTTGCAAGAAATCGGTGAAGCTAAATTTCCAAATGAAAGCAGGGCGGATGGGTGGCTGGAGATGGAGCTGGGTGAGTATCACTGTCAAGGGGATGAAGACGGGGAATTGGAGATGATTTGTTGTGAGATTGAGACTGGTATGGGTAAGGGTGGTCTCATTGTTCAAGGGATTGAGGTCAGACCGAAAAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

304

Amino Acids

34.82

Weight (kDa)

8.55

Isoelectric Point (pI)

55.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 109 - 301 1.6e-47 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 507
AarI CACCTGC 1 cut(s) 76
AasI GACNNNNNNGTC 1 cut(s) 272
Acc36I ACCTGC 1 cut(s) 76
AccII CGCG 1 cut(s) 481
AciI CCGC 2 cut(s) 203, 764
AcoI YGGCCR 1 cut(s) 429
AcsI RAATTY 1 cut(s) 743
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 1 cut(s) 524
AgsI TTSAA 5 cut(s) 458, 476, 536, 625, 884
AjnI CCWGG 2 cut(s) 413, 616
AluBI AGCT 9 cut(s) 110, 247, 300, 344, 436, 512, 593, 740, 787
AluI AGCT 9 cut(s) 110, 247, 300, 344, 436, 512, 593, 740, 787
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 3 cut(s) 543, 845, 878
AlwNI CAGNNNCTG 2 cut(s) 94, 206
AoxI GGCC 3 cut(s) 429, 555, 664
ApaI GGGCCC 1 cut(s) 668
ApeKI GCWGC 3 cut(s) 82, 344, 691
ApoI RAATTY 1 cut(s) 743
AspLEI GCGC 2 cut(s) 354, 483
AspS9I GGNCC 3 cut(s) 555, 664, 665
AsuHPI GGTGA 5 cut(s) 46, 57, 383, 746, 803
BaeGI GKGCMC 2 cut(s) 617, 668
BanII GRGCYC 2 cut(s) 249, 668
BarI GAAGNNNNNNTAC 2 cut(s) 233, 265
BauI CACGAG 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 822
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 3 cut(s) 94, 331, 678
BccI CCATC 4 cut(s) 387, 502, 761, 775
BceAI ACGGC 1 cut(s) 203
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BciT130I CCWGG 2 cut(s) 415, 618
BcoDI GTCTC 3 cut(s) 543, 845, 878
BfaI CTAG 2 cut(s) 308, 913
BfmI CTRYAG 1 cut(s) 636
BfoI RGCGCY 1 cut(s) 355
BfuAI ACCTGC 1 cut(s) 76
BisI GCNGC 4 cut(s) 83, 204, 345, 692
BlsI GCNGC 4 cut(s) 84, 205, 346, 693
Bme1390I CCNGG 2 cut(s) 415, 618
BmgT120I GGNCC 3 cut(s) 555, 664, 665
BmiI GGNNCC 2 cut(s) 666, 667
BmrFI CCNGG 2 cut(s) 415, 618
BmrI ACTGGG 1 cut(s) 562
BmsI GCATC 3 cut(s) 69, 113, 151
BmuI ACTGGG 1 cut(s) 562
BpiI GAAGAC 1 cut(s) 822
BpmI CTGGAG 2 cut(s) 141, 797
BsaAI YACGTR 1 cut(s) 136
BsaBI GATNNNNATC 1 cut(s) 397
BsaHI GRCGYC 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 878
BsaJI CCNNGG 2 cut(s) 463, 616
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bse1I ACTGG 2 cut(s) 557, 859
Bse8I GATNNNNATC 1 cut(s) 397
BseBI CCWGG 2 cut(s) 415, 618
BseDI CCNNGG 2 cut(s) 463, 616
BseGI GGATG 4 cut(s) 128, 494, 772, 817
BseJI GATNNNNATC 1 cut(s) 397
BseMII CTCAG 2 cut(s) 60, 422
BseNI ACTGG 2 cut(s) 557, 859
BseRI GAGGAG 1 cut(s) 166
BseSI GKGCMC 2 cut(s) 617, 668
BseXI GCAGC 3 cut(s) 94, 331, 678
BseYI CCCAGC 1 cut(s) 787
BsgI GTGCAG 1 cut(s) 677
Bsh1236I CGCG 1 cut(s) 481
BshFI GGCC 3 cut(s) 431, 557, 666
BsiHKAI GWGCWC 1 cut(s) 249
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 475
BsmAI GTCTC 3 cut(s) 543, 845, 878
BsmFI GGGAC 1 cut(s) 475
BsnI GGCC 3 cut(s) 431, 557, 666
Bso31I GGTCTC 1 cut(s) 878
Bsp120I GGGCCC 1 cut(s) 664
Bsp1286I GDGCHC 3 cut(s) 249, 617, 668
Bsp1407I TGTACA 1 cut(s) 522
BspACI CCGC 2 cut(s) 203, 764
BspANI GGCC 3 cut(s) 431, 557, 666
BspCNI CTCAG 2 cut(s) 59, 421
BspFNI CGCG 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 666, 667
BspMAI CTGCAG 1 cut(s) 640
BspMI ACCTGC 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 878
BsrGI TGTACA 1 cut(s) 522
BsrI ACTGG 2 cut(s) 557, 859
BssECI CCNNGG 2 cut(s) 463, 616
BssNI GRCGYC 1 cut(s) 216
BssSI CACGAG 1 cut(s) 295
Bst2BI CACGAG 1 cut(s) 295
Bst2UI CCWGG 2 cut(s) 415, 618
Bst4CI ACNGT 3 cut(s) 580, 719, 803
Bst6I CTCTTC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 216
BstAPI GCANNNNNTGC 3 cut(s) 112, 691, 721
BstAUI TGTACA 1 cut(s) 522
BstBAI YACGTR 1 cut(s) 136
BstC8I GCNNGC 5 cut(s) 108, 166, 170, 485, 640
BstDEI CTNAG 3 cut(s) 46, 186, 408
BstDSI CCRYGG 1 cut(s) 463
BstF5I GGATG 4 cut(s) 128, 494, 772, 817
BstFNI CGCG 1 cut(s) 481
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 2 cut(s) 354, 483
BstMAI GTCTC 3 cut(s) 543, 845, 878
BstMWI GCNNNNNNNGC 7 cut(s) 88, 103, 112, 178, 297, 691, 721
BstNI CCWGG 2 cut(s) 415, 618
BstNSI RCATGY 2 cut(s) 168, 487
BstSCI CCNGG 2 cut(s) 413, 616
BstSFI CTRYAG 1 cut(s) 636
BstSLI GKGCMC 2 cut(s) 617, 668
BstUI CGCG 1 cut(s) 481
BstV1I GCAGC 3 cut(s) 94, 331, 678
BstV2I GAAGAC 1 cut(s) 822
BsuRI GGCC 3 cut(s) 431, 557, 666
BtgI CCRYGG 1 cut(s) 463
BtsCI GGATG 4 cut(s) 128, 494, 772, 817
BtsI GCAGTG 2 cut(s) 92, 651
BtsIMutI CAGTG 4 cut(s) 92, 540, 651, 799
BveI ACCTGC 1 cut(s) 76
Cac8I GCNNGC 5 cut(s) 108, 166, 170, 485, 640
CaiI CAGNNNCTG 2 cut(s) 94, 206
CfoI GCGC 2 cut(s) 354, 483
Cfr13I GGNCC 3 cut(s) 555, 664, 665
CseI GACGC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 523
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviAII CATG 3 cut(s) 165, 253, 484
CviQI GTAC 1 cut(s) 523
DdeI CTNAG 3 cut(s) 46, 186, 408
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
EaeI YGGCCR 1 cut(s) 429
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
EciI GGCGGA 1 cut(s) 779
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 2 cut(s) 249, 668
Eco31I GGTCTC 1 cut(s) 878
Eco53kI GAGCTC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 665
EcoRII CCWGG 2 cut(s) 413, 616
EcoT22I ATGCAT 2 cut(s) 128, 166
EcoT38I GRGCYC 2 cut(s) 249, 668
FaeI CATG 3 cut(s) 168, 256, 487
FaqI GGGAC 1 cut(s) 475
FatI CATG 3 cut(s) 164, 252, 483
Fnu4HI GCNGC 4 cut(s) 83, 204, 345, 692
FokI GGATG 4 cut(s) 135, 481, 779, 824
FriOI GRGCYC 2 cut(s) 249, 668
Fsp4HI GCNGC 4 cut(s) 83, 204, 345, 692
FspBI CTAG 2 cut(s) 308, 913
GlaI GCGC 2 cut(s) 353, 482
GluI GCNGC 4 cut(s) 83, 204, 345, 692
GsaI CCCAGC 1 cut(s) 791
GsuI CTGGAG 2 cut(s) 141, 797
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 3 cut(s) 431, 557, 666
HapII CCGG 1 cut(s) 116
HgaI GACGC 1 cut(s) 224
HhaI GCGC 2 cut(s) 354, 483
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 3 cut(s) 168, 256, 487
Hin6I GCGC 2 cut(s) 352, 481
HinP1I GCGC 2 cut(s) 352, 481
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HindIII AAGCTT 2 cut(s) 108, 510
HinfI GANTC 3 cut(s) 62, 209, 406
HpaII CCGG 1 cut(s) 116
HphI GGTGA 5 cut(s) 46, 57, 383, 746, 803
Hpy166II GTNNAC 2 cut(s) 147, 523
Hpy188I TCNGA 6 cut(s) 49, 214, 240, 360, 405, 899
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 2 cut(s) 147, 523
Hpy99I CGWCG 3 cut(s) 76, 218, 384
HpyAV CCTTC 7 cut(s) 25, 49, 113, 235, 319, 365, 619
HpyCH4III ACNGT 3 cut(s) 580, 719, 803
HpyCH4IV ACGT 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 7 cut(s) 88, 103, 112, 178, 297, 691, 721
HpyF3I CTNAG 3 cut(s) 46, 186, 408
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 3 cut(s) 168, 256, 487
HspAI GCGC 2 cut(s) 352, 481
LmnI GCTCC 2 cut(s) 244, 784
Lsp1109I GCAGC 3 cut(s) 94, 331, 678
LweI GCATC 3 cut(s) 69, 113, 151
MaeI CTAG 2 cut(s) 308, 913
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 22, 574
MboII GAAGA 7 cut(s) 16, 19, 22, 49, 52, 64, 827
MhlI GDGCHC 3 cut(s) 249, 617, 668
MluCI AATT 4 cut(s) 471, 531, 743, 824
MlyI GAGTC 1 cut(s) 400
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 7 cut(s) 52, 165, 187, 280, 287, 418, 886
Mph1103I ATGCAT 2 cut(s) 128, 166
MseI TTAA 3 cut(s) 420, 530, 645
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 2 cut(s) 415, 618
MvaI CCWGG 2 cut(s) 415, 618
MvnI CGCG 1 cut(s) 481
MwoI GCNNNNNNNGC 7 cut(s) 88, 103, 112, 178, 297, 691, 721
NlaIII CATG 3 cut(s) 168, 256, 487
NlaIV GGNNCC 2 cut(s) 666, 667
NmeAIII GCCGAG 1 cut(s) 457
NmuCI GTSAC 2 cut(s) 22, 574
NsiI ATGCAT 2 cut(s) 128, 166
NspI RCATGY 2 cut(s) 168, 487
PaeI GCATGC 2 cut(s) 168, 487
PaqCI CACCTGC 1 cut(s) 76
PfeI GAWTC 2 cut(s) 62, 209
PflFI GACNNNGTC 1 cut(s) 409
PkrI GCNGC 4 cut(s) 84, 205, 346, 693
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
Ppu21I YACGTR 1 cut(s) 136
PsiI TTATAA 1 cut(s) 507
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 413, 616
PspFI CCCAGC 1 cut(s) 787
PspGI CCWGG 2 cut(s) 413, 616
PspN4I GGNNCC 2 cut(s) 666, 667
PspOMI GGGCCC 1 cut(s) 664
PspPI GGNCC 3 cut(s) 555, 664, 665
PstI CTGCAG 1 cut(s) 640
PstNI CAGNNNCTG 2 cut(s) 94, 206
PsyI GACNNNGTC 1 cut(s) 409
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 3 cut(s) 420, 530, 645
SatI GCNGC 4 cut(s) 83, 204, 345, 692
Sau96I GGNCC 3 cut(s) 555, 664, 665
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 2 cut(s) 415, 618
SduI GDGCHC 3 cut(s) 249, 617, 668
SfaNI GCATC 3 cut(s) 69, 113, 151
SfcI CTRYAG 1 cut(s) 636
SphI GCATGC 2 cut(s) 168, 487
Sse9I AATT 4 cut(s) 471, 531, 743, 824
SsiI CCGC 2 cut(s) 203, 764
SspMI CTAG 2 cut(s) 308, 913
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 2 cut(s) 413, 616
TaaI ACNGT 3 cut(s) 580, 719, 803
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 382
TasI AATT 4 cut(s) 471, 531, 743, 824
TatI WGTACW 1 cut(s) 522
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 2 cut(s) 62, 209
Tru1I TTAA 3 cut(s) 420, 530, 645
Tru9I TTAA 3 cut(s) 420, 530, 645
TscAI CASTG 4 cut(s) 99, 547, 658, 806
TseFI GTSAC 2 cut(s) 22, 574
TseI GCWGC 3 cut(s) 82, 344, 691
Tsp45I GTSAC 2 cut(s) 22, 574
TspDTI ATGAA 4 cut(s) 17, 223, 768, 828
TspGWI ACGGA 3 cut(s) 41, 89, 452
TspRI CASTG 4 cut(s) 99, 547, 658, 806
Tth111I GACNNNGTC 1 cut(s) 409
XapI RAATTY 1 cut(s) 743
XceI RCATGY 2 cut(s) 168, 487
XspI CTAG 2 cut(s) 308, 913
Zsp2I ATGCAT 2 cut(s) 128, 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.