RLG00000025742

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000189
Physical Location & Seq
Reverse (-)
48010181 .. 48011375
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025742

Sequence Viewer

Length: 645 bp
ATGGATCTGCTGCAGCTGCCGGAGGGTTGCATAGCCAACATCGTATCGTTGACGACTCCTGAAGATGCCTGCCGCCTGTCTTTGCTCTGTAAGATTTTCAAGTCTGCGGCGGAATCCGACTCCGTTTGGGACAAGTTCCTTCCGCCTGAGACGCCCAAGATCCTGTCCGAGTCCGGCGAATCTGGATTATTGGCCTCCAAATCCAAGAAGGAGCTTTACCTCGCTCTCTGCAACAAACCTGTCCTCATCAACGACGGTAAATTGAGCTTTTCACTGGACAAATGGAGTGGGAAAAAATGTTACATGATTCTGCAAGAGAGCTTGGTATTACCTGGGGCGGTACTCCCCAGTATTGGACATGGACTTCTCATCCTGAATCCAGGTTTCCGGAGGGCTTATGGATTTGAACACCTACCTGCGGAGGTCACTATAGGTCTGGAGGGAGAAGAACAGAGTAACGAGACTCTCTTTCCTCACAACGAAGGGGAGAGACCCGGGTGGTTGGAGATTGAGCTGGGTGAGTTTTTCTGTGAAGAGGGAGAAGATCGGCTGTTGAAAATGCGTTGTTTGGCGAAGGAGGGTCTTCATTGGAAGAGCGGTCTTATTGTTCAAGGCATTGAGGTCAGGCCTAACAGGAAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

215

Amino Acids

23.81

Weight (kDa)

5.26

Isoelectric Point (pI)

52.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 44 5e-07 F-box domain
PP2 PF14299 131 - 210 6.9e-15 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 424
AccBSI CCGCTC 1 cut(s) 597
AccIII TCCGGA 1 cut(s) 387
AciI CCGC 7 cut(s) 73, 107, 110, 143, 338, 419, 597
AclWI GGATC 2 cut(s) 12, 154
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 152
AfaI GTAC 2 cut(s) 342, 641
AfiI CCNNNNNNNGG 2 cut(s) 353, 418
AgsI TTSAA 4 cut(s) 100, 407, 556, 611
AjnI CCWGG 2 cut(s) 331, 379
AluBI AGCT 5 cut(s) 16, 214, 267, 321, 514
AluI AGCT 5 cut(s) 16, 214, 267, 321, 514
Alw26I GTCTC 3 cut(s) 143, 455, 484
AlwI GGATC 2 cut(s) 12, 154
Ama87I CYCGRG 1 cut(s) 494
Aor13HI TCCGGA 1 cut(s) 387
AoxI GGCC 2 cut(s) 192, 626
ApeKI GCWGC 3 cut(s) 10, 13, 16
AsuC2I CCSGG 2 cut(s) 495, 496
AsuHPI GGTGA 1 cut(s) 530
AvaI CYCGRG 1 cut(s) 494
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BbsI GAAGAC 1 cut(s) 575
BbvI GCAGC 2 cut(s) 3, 25
BciT130I CCWGG 2 cut(s) 333, 381
BcnI CCSGG 2 cut(s) 495, 496
BcoDI GTCTC 3 cut(s) 143, 455, 484
BfaI CTAG 1 cut(s) 643
BfmI CTRYAG 2 cut(s) 11, 429
BfuAI ACCTGC 1 cut(s) 424
BisI GCNGC 5 cut(s) 11, 14, 17, 73, 108
BlsI GCNGC 5 cut(s) 12, 15, 18, 74, 109
BmcAI AGTACT 1 cut(s) 641
Bme1390I CCNGG 4 cut(s) 333, 381, 495, 496
BmeT110I CYCGRG 1 cut(s) 494
BmrFI CCNGG 4 cut(s) 333, 381, 495, 496
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 55
BmuI ACTGGG 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 575
BpmI CTGGAG 1 cut(s) 458
BpuMI CCSGG 2 cut(s) 495, 496
BsaHI GRCGYC 1 cut(s) 152
BsaI GGTCTC 1 cut(s) 484
BsaJI CCNNGG 2 cut(s) 332, 494
BsaWI WCCGGW 1 cut(s) 387
Bsc4I CCNNNNNNNGG 2 cut(s) 353, 418
Bse1I ACTGG 2 cut(s) 279, 348
BseAI TCCGGA 1 cut(s) 387
BseBI CCWGG 2 cut(s) 333, 381
BseDI CCNNGG 2 cut(s) 332, 494
BseGI GGATG 1 cut(s) 369
BseLI CCNNNNNNNGG 2 cut(s) 353, 418
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 2 cut(s) 279, 348
BseXI GCAGC 2 cut(s) 3, 25
BseYI CCCAGC 1 cut(s) 514
BshFI GGCC 2 cut(s) 194, 628
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 4 cut(s) 20, 174, 388, 495
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 2 cut(s) 353, 418
BsmAI GTCTC 3 cut(s) 143, 455, 484
BsmBI CGTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 2 cut(s) 194, 628
Bso31I GGTCTC 1 cut(s) 484
BsoBI CYCGRG 1 cut(s) 494
Bsp13I TCCGGA 1 cut(s) 387
Bsp143I GATC 3 cut(s) 4, 159, 544
BspACI CCGC 7 cut(s) 73, 107, 110, 143, 338, 419, 597
BspANI GGCC 2 cut(s) 194, 628
BspCNI CTCAG 1 cut(s) 139
BspEI TCCGGA 1 cut(s) 387
BspMAI CTGCAG 1 cut(s) 15
BspMI ACCTGC 1 cut(s) 424
BspPI GGATC 2 cut(s) 12, 154
BspQI GCTCTTC 1 cut(s) 587
BspTNI GGTCTC 1 cut(s) 484
BsrBI CCGCTC 1 cut(s) 597
BsrI ACTGG 2 cut(s) 279, 348
BssECI CCNNGG 2 cut(s) 332, 494
BssMI GATC 3 cut(s) 4, 159, 544
BssNI GRCGYC 1 cut(s) 152
Bst2UI CCWGG 2 cut(s) 333, 381
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 2 cut(s) 528, 587
BstACI GRCGYC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 369
BstKTI GATC 3 cut(s) 7, 162, 547
BstMAI GTCTC 3 cut(s) 143, 455, 484
BstMBI GATC 3 cut(s) 4, 159, 544
BstMWI GCNNNNNNNGC 2 cut(s) 16, 151
BstNI CCWGG 2 cut(s) 333, 381
BstSCI CCNGG 4 cut(s) 331, 379, 493, 494
BstSFI CTRYAG 2 cut(s) 11, 429
BstV1I GCAGC 2 cut(s) 3, 25
BstV2I GAAGAC 1 cut(s) 575
BstX2I RGATCY 2 cut(s) 4, 159
BstYI RGATCY 2 cut(s) 4, 159
BsuRI GGCC 2 cut(s) 194, 628
BtsCI GGATG 1 cut(s) 369
BtsIMutI CAGTG 1 cut(s) 272
BveI ACCTGC 1 cut(s) 424
Cac8I GCNNGC 1 cut(s) 70
Cfr9I CCCGGG 1 cut(s) 494
CseI GACGC 1 cut(s) 160
Csp6I GTAC 2 cut(s) 341, 640
CspCI CAANNNNNGTGG 2 cut(s) 268, 303
CviAII CATG 2 cut(s) 304, 359
CviQI GTAC 2 cut(s) 341, 640
DdeI CTNAG 1 cut(s) 147
DpnI GATC 3 cut(s) 6, 161, 546
DpnII GATC 3 cut(s) 4, 159, 544
Eam1104I CTCTTC 2 cut(s) 528, 587
EarI CTCTTC 2 cut(s) 528, 587
EciI GGCGGA 2 cut(s) 125, 132
Eco147I AGGCCT 1 cut(s) 628
Eco31I GGTCTC 1 cut(s) 484
Eco57I CTGAAG 1 cut(s) 81
Eco88I CYCGRG 1 cut(s) 494
EcoRII CCWGG 2 cut(s) 331, 379
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 2 cut(s) 307, 362
FaiI YATR 5 cut(s) 32, 305, 360, 399, 431
FaqI GGGAC 1 cut(s) 143
FatI CATG 2 cut(s) 303, 358
Fnu4HI GCNGC 5 cut(s) 11, 14, 17, 73, 108
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 5 cut(s) 11, 14, 17, 73, 108
FspBI CTAG 1 cut(s) 643
GluI GCNGC 5 cut(s) 11, 14, 17, 73, 108
GsaI CCCAGC 1 cut(s) 518
GsuI CTGGAG 1 cut(s) 458
HaeIII GGCC 2 cut(s) 194, 628
HapII CCGG 4 cut(s) 20, 174, 388, 495
HgaI GACGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 152
Hin1II CATG 2 cut(s) 307, 362
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 8 cut(s) 55, 113, 119, 170, 179, 307, 376, 463
HpaII CCGG 4 cut(s) 20, 174, 388, 495
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 2 cut(s) 118, 169
Hpy188III TCNNGA 5 cut(s) 59, 183, 373, 388, 437
Hpy8I GTNNAC 1 cut(s) 51
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 4 cut(s) 149, 202, 476, 568
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 4 cut(s) 13, 30, 231, 313
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 151
HpyF3I CTNAG 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 152
Hsp92II CATG 2 cut(s) 307, 362
Kpn2I TCCGGA 1 cut(s) 387
Kzo9I GATC 3 cut(s) 4, 159, 544
LguI GCTCTTC 1 cut(s) 587
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 2 cut(s) 3, 25
LweI GCATC 1 cut(s) 55
MaeI CTAG 1 cut(s) 643
MaeIII GTNAC 3 cut(s) 299, 424, 455
MalI GATC 3 cut(s) 6, 161, 546
MbiI CCGCTC 1 cut(s) 597
MboI GATC 3 cut(s) 4, 159, 544
MboII GAAGA 6 cut(s) 74, 458, 545, 554, 575, 604
MflI RGATCY 2 cut(s) 4, 159
MluCI AATT 1 cut(s) 260
MlyI GAGTC 4 cut(s) 49, 113, 179, 457
MmeI TCCRAC 2 cut(s) 141, 483
MroI TCCGGA 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 16
MspI CCGG 4 cut(s) 20, 174, 388, 495
MspR9I CCNGG 4 cut(s) 333, 381, 495, 496
MvaI CCWGG 2 cut(s) 333, 381
MwoI GCNNNNNNNGC 2 cut(s) 16, 151
NciI CCSGG 2 cut(s) 495, 496
NdeII GATC 3 cut(s) 4, 159, 544
NlaIII CATG 2 cut(s) 307, 362
NmuCI GTSAC 1 cut(s) 424
PceI AGGCCT 1 cut(s) 628
PciSI GCTCTTC 1 cut(s) 587
PfeI GAWTC 4 cut(s) 113, 179, 307, 376
PkrI GCNGC 5 cut(s) 12, 15, 18, 74, 109
PleI GAGTC 4 cut(s) 49, 113, 178, 457
PpsI GAGTC 4 cut(s) 49, 113, 178, 457
Psp6I CCWGG 2 cut(s) 331, 379
PspFI CCCAGC 1 cut(s) 514
PspGI CCWGG 2 cut(s) 331, 379
PstI CTGCAG 1 cut(s) 15
PsuI RGATCY 2 cut(s) 4, 159
PvuII CAGCTG 1 cut(s) 16
RsaI GTAC 2 cut(s) 342, 641
RsaNI GTAC 2 cut(s) 341, 640
SapI GCTCTTC 1 cut(s) 587
SatI GCNGC 5 cut(s) 11, 14, 17, 73, 108
Sau3AI GATC 3 cut(s) 4, 159, 544
ScaI AGTACT 1 cut(s) 641
SchI GAGTC 4 cut(s) 49, 113, 179, 457
ScrFI CCNGG 4 cut(s) 333, 381, 495, 496
SfaNI GCATC 1 cut(s) 55
SfcI CTRYAG 2 cut(s) 11, 429
SmaI CCCGGG 1 cut(s) 496
Sse9I AATT 1 cut(s) 260
SseBI AGGCCT 1 cut(s) 628
SsiI CCGC 7 cut(s) 73, 107, 110, 143, 338, 419, 597
SspMI CTAG 1 cut(s) 643
StuI AGGCCT 1 cut(s) 628
StyD4I CCNGG 4 cut(s) 331, 379, 493, 494
TaaI ACNGT 1 cut(s) 257
TasI AATT 1 cut(s) 260
TatI WGTACW 1 cut(s) 639
TauI GCSGC 2 cut(s) 75, 110
TfiI GAWTC 4 cut(s) 113, 179, 307, 376
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 3 cut(s) 10, 13, 16
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 1 cut(s) 575
TspGWI ACGGA 1 cut(s) 112
TspMI CCCGGG 1 cut(s) 494
TspRI CASTG 1 cut(s) 279
XmaI CCCGGG 1 cut(s) 494
XspI CTAG 1 cut(s) 643
ZrmI AGTACT 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.