Rh2DG187600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000189
Physical Location & Seq
Forward (+)
16761826 .. 16762514
689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG187600.1

Sequence Viewer

Length: 486 bp
ATGATCACCTGCTGCAAGACAGTGTTGGATCTGCAGGCTTTGCCCGAAGGATGCATAGCGAACATCATCTCATTCACGACTCCTAGAGATGCCTGCAGGCTGTCCTCGCTTTCCAGGATTTTCATGTCGGCCGCGGAATCCGACACCATTTGGTTCAAGTTCATTCCGCCTGAGATCCATTCACTACTATCTCCTCTCTATTGCCTTTCCAAATCCAAGAAGGAGCTTTACCTTGCACTATGTGATTCCCCAGCACTCATTGACGAGGGCAAGATGAGTTTGTCACTGGACAAGTGGAGTGGGAAGAAATGTTACATGATATCTGCAAGGAGCCTTCAGATTATTTGGTCTGATACTCCGCAATATTGGAGATGGATTTCTCTCCCTGACACCAGGTTTGAGGAGGTGGCTGAGCTTCTTGGTGTTTGGTGGCTTGAAATCAGTGGAAAAATTGATAGACGCATGATGTCTCCGTCGACTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

161

Amino Acids

18.39

Weight (kDa)

6.57

Isoelectric Point (pI)

63.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 102 - 160 1.1e-24 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 17
Acc36I ACCTGC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 476
AccII CGCG 1 cut(s) 134
AciI CCGC 4 cut(s) 132, 134, 167, 359
AclWI GGATC 2 cut(s) 36, 169
AcoI YGGCCR 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 320
AdeI CACNNNGTG 1 cut(s) 242
AgsI TTSAA 2 cut(s) 157, 437
AjnI CCWGG 2 cut(s) 113, 392
AluBI AGCT 2 cut(s) 226, 415
AluI AGCT 2 cut(s) 226, 415
Alw26I GTCTC 1 cut(s) 474
AlwI GGATC 2 cut(s) 36, 169
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 12
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
BarI GAAGNNNNNNTAC 4 cut(s) 212, 244, 296, 328
BccI CCATC 1 cut(s) 366
BciT130I CCWGG 2 cut(s) 115, 394
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 2 cut(s) 32, 94
BfuAI ACCTGC 1 cut(s) 17
BisI GCNGC 2 cut(s) 13, 132
BlpI GCTNAGC 1 cut(s) 411
BlsI GCNGC 2 cut(s) 14, 133
Bme1390I CCNGG 2 cut(s) 115, 394
BmiI GGNNCC 1 cut(s) 332
BmrFI CCNGG 2 cut(s) 115, 394
BmsI GCATC 2 cut(s) 41, 79
Bpu1102I GCTNAGC 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 291
BseBI CCWGG 2 cut(s) 115, 394
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 56
BseMII CTCAG 2 cut(s) 162, 402
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 2 cut(s) 183, 416
BseX3I CGGCCG 1 cut(s) 129
BseYI CCCAGC 1 cut(s) 250
Bsh1236I CGCG 1 cut(s) 134
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 1 cut(s) 131
BsiEI CGRYCG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 474
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 3 cut(s) 3, 28, 174
Bsp1720I GCTNAGC 1 cut(s) 411
BspACI CCGC 4 cut(s) 132, 134, 167, 359
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 2 cut(s) 163, 403
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 332
BspMAI CTGCAG 2 cut(s) 36, 98
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 2 cut(s) 36, 169
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 3 cut(s) 3, 28, 174
Bst2UI CCWGG 2 cut(s) 115, 394
Bst4CI ACNGT 1 cut(s) 22
BstAPI GCANNNNNTGC 1 cut(s) 40
BstC8I GCNNGC 3 cut(s) 36, 94, 98
BstDEI CTNAG 2 cut(s) 171, 411
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 56
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 3 cut(s) 6, 31, 177
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 3 cut(s) 3, 28, 174
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 2 cut(s) 40, 106
BstNI CCWGG 2 cut(s) 115, 394
BstSCI CCNGG 2 cut(s) 113, 392
BstSFI CTRYAG 2 cut(s) 32, 94
BstUI CGCG 1 cut(s) 134
BstX2I RGATCY 2 cut(s) 28, 174
BstYI RGATCY 2 cut(s) 28, 174
BstZI CGGCCG 1 cut(s) 129
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 1 cut(s) 56
BtsIMutI CAGTG 3 cut(s) 27, 284, 448
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 3 cut(s) 36, 94, 98
Cfr42I CCGCGG 1 cut(s) 135
CseI GACGC 1 cut(s) 468
CsiI ACCWGGT 1 cut(s) 392
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviAII CATG 3 cut(s) 124, 316, 463
CviJI RGCY 8 cut(s) 38, 100, 131, 226, 333, 410, 415, 433
CviKI_1 RGCY 8 cut(s) 38, 100, 131, 226, 333, 410, 415, 433
DdeI CTNAG 2 cut(s) 171, 411
DpnI GATC 3 cut(s) 5, 30, 176
DpnII GATC 3 cut(s) 3, 28, 174
DraIII CACNNNGTG 1 cut(s) 242
EaeI YGGCCR 1 cut(s) 129
EagI CGGCCG 1 cut(s) 129
EciI GGCGGA 1 cut(s) 156
EclXI CGGCCG 1 cut(s) 129
Eco32I GATATC 1 cut(s) 321
Eco52I CGGCCG 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 320
EcoRII CCWGG 2 cut(s) 113, 392
EcoRV GATATC 1 cut(s) 321
EcoT22I ATGCAT 1 cut(s) 56
FaeI CATG 3 cut(s) 127, 319, 466
FaiI YATR 5 cut(s) 56, 125, 241, 317, 464
FatI CATG 3 cut(s) 123, 315, 462
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 476
Fnu4HI GCNGC 2 cut(s) 13, 132
FokI GGATG 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 13, 132
FspBI CTAG 1 cut(s) 84
GluI GCNGC 2 cut(s) 13, 132
GsaI CCCAGC 1 cut(s) 254
HaeIII GGCC 1 cut(s) 131
HgaI GACGC 1 cut(s) 468
Hin1II CATG 3 cut(s) 127, 319, 466
HincII GTYRAC 1 cut(s) 477
HindII GTYRAC 1 cut(s) 477
HinfI GANTC 4 cut(s) 79, 137, 245, 478
Hpy166II GTNNAC 1 cut(s) 477
Hpy188I TCNGA 3 cut(s) 142, 339, 352
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 477
Hpy99I CGWCG 1 cut(s) 478
HpyAV CCTTC 3 cut(s) 41, 214, 344
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 6 cut(s) 15, 34, 54, 96, 236, 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 106
HpyF3I CTNAG 2 cut(s) 171, 411
Hsp92II CATG 3 cut(s) 127, 319, 466
Ksp22I TGATCA 1 cut(s) 3
KspI CCGCGG 1 cut(s) 135
Kzo9I GATC 3 cut(s) 3, 28, 174
LmnI GCTCC 2 cut(s) 223, 330
LweI GCATC 2 cut(s) 41, 79
MabI ACCWGGT 1 cut(s) 392
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 282, 311
MalI GATC 3 cut(s) 5, 30, 176
MboI GATC 3 cut(s) 3, 28, 174
MboII GAAGA 1 cut(s) 316
MflI RGATCY 2 cut(s) 28, 174
MluCI AATT 1 cut(s) 450
MlyI GAGTC 2 cut(s) 73, 472
MmeI TCCRAC 2 cut(s) 6, 165
MnlI CCTC 5 cut(s) 115, 204, 259, 394, 397
Mph1103I ATGCAT 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 134
MspR9I CCNGG 2 cut(s) 115, 394
MvaI CCWGG 2 cut(s) 115, 394
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 2 cut(s) 40, 106
NdeII GATC 3 cut(s) 3, 28, 174
NlaIII CATG 3 cut(s) 127, 319, 466
NlaIV GGNNCC 1 cut(s) 332
NmuCI GTSAC 1 cut(s) 282
NsiI ATGCAT 1 cut(s) 56
PaqCI CACCTGC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 137, 245
PfoI TCCNGGA 1 cut(s) 113
PkrI GCNGC 2 cut(s) 14, 133
PleI GAGTC 2 cut(s) 73, 472
PpsI GAGTC 2 cut(s) 73, 472
Psp6I CCWGG 2 cut(s) 113, 392
PspFI CCCAGC 1 cut(s) 250
PspGI CCWGG 2 cut(s) 113, 392
PspN4I GGNNCC 1 cut(s) 332
PstI CTGCAG 2 cut(s) 36, 98
PsuI RGATCY 2 cut(s) 28, 174
SacII CCGCGG 1 cut(s) 135
SalI GTCGAC 1 cut(s) 475
SatI GCNGC 2 cut(s) 13, 132
Sau3AI GATC 3 cut(s) 3, 28, 174
SbfI CCTGCAGG 1 cut(s) 98
SchI GAGTC 2 cut(s) 73, 472
ScrFI CCNGG 2 cut(s) 115, 394
SdaI CCTGCAGG 1 cut(s) 98
SetI ASST 6 cut(s) 11, 228, 234, 398, 408, 417
SexAI ACCWGGT 1 cut(s) 392
SfaNI GCATC 2 cut(s) 41, 79
SfcI CTRYAG 2 cut(s) 32, 94
Sfr303I CCGCGG 1 cut(s) 135
SgrBI CCGCGG 1 cut(s) 135
Sse8387I CCTGCAGG 1 cut(s) 98
Sse9I AATT 1 cut(s) 450
SsiI CCGC 4 cut(s) 132, 134, 167, 359
SspI AATATT 1 cut(s) 365
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 113, 392
TaaI ACNGT 1 cut(s) 22
TaqI TCGA 1 cut(s) 476
TasI AATT 1 cut(s) 450
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 2 cut(s) 137, 245
TscAI CASTG 3 cut(s) 27, 291, 448
TseFI GTSAC 1 cut(s) 282
TseI GCWGC 1 cut(s) 12
Tsp45I GTSAC 1 cut(s) 282
TspDTI ATGAA 2 cut(s) 112, 151
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 3 cut(s) 27, 291, 448
XmiI GTMKAC 1 cut(s) 476
XspI CTAG 1 cut(s) 84
Zsp2I ATGCAT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.