Rh3BG012200

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000189
Physical Location & Seq
Forward (+)
749436 .. 750833
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG012200.1

Sequence Viewer

Length: 621 bp
ATGATGCAGCATCTAGACTTGCAAGCGTTGCCGGAAGGATGCATTGCCAATGTGATCTCATTGACCAGTCCTCCAGATGCGTGCAGGCTATCGGTGCTTTCTTGGGTTATCAGATTGGCAGCAGAATCCGACGCCGTTTGGGACAAGTTCCTGCCCCCTGAGACCCATGAGATCCTATCCCACTCTGCCACTGCCTCCGCTGCCAAATCCAAGAAAGAGCTCTACATGTCTCTCAGCCACAGCCCCGTCCTCATCGACGATGGCACTATGCTGAAAAGCGCCTTCGGATTGCTTGGGGTGATACCTAGCACCAGGTTCGAGGAAGTAGCTGAGCTTCAGTGGGTTGGTTGGTTTGAAATTCGTGGGAGAATTGCTATACGCATGCTTACCCCATCAACTCTATGTAAAGCTTATGTTGTGTACAAGTTTACTGAAAGCGCATGGGGATTTGACAACTATCCTGTGGTGGTGGCGGTTTCTGCAAGGGATTATGGCTTTGATTATGAAAGCCCTAGTTTGAGAGAAATAGTTGATGGAGGAGAACTTAAGCACACTGCCTTTCTGGTGCATCCCGAGAGAGGAATCAGTGATGATCAGCATTTTCCAAAGGAAACAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

206

Amino Acids

22.9

Weight (kDa)

5.21

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 102 - 161 3.1e-14 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 198, 473
AclWI GGATC 1 cut(s) 166
AcsI RAATTY 1 cut(s) 357
AcuI CTGAAG 1 cut(s) 320
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 1 cut(s) 422
AfiI CCNNNNNNNGG 1 cut(s) 578
AflII CTTAAG 1 cut(s) 545
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 1 cut(s) 356
AjnI CCWGG 1 cut(s) 311
AluBI AGCT 4 cut(s) 220, 329, 334, 410
AluI AGCT 4 cut(s) 220, 329, 334, 410
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 2 cut(s) 155, 234
AlwI GGATC 1 cut(s) 166
Ama87I CYCGRG 1 cut(s) 572
ApeKI GCWGC 3 cut(s) 7, 119, 200
ApoI RAATTY 1 cut(s) 357
AspLEI GCGC 2 cut(s) 281, 440
AsuHPI GGTGA 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 572
BanII GRGCYC 1 cut(s) 222
BarI GAAGNNNNNNTAC 2 cut(s) 318, 350
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 3 cut(s) 19, 131, 187
BccI CCATC 3 cut(s) 254, 400, 527
BceAI ACGGC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BciT130I CCWGG 1 cut(s) 313
BclI TGATCA 1 cut(s) 592
BcoDI GTCTC 2 cut(s) 155, 234
BfaI CTAG 3 cut(s) 14, 306, 513
BfoI RGCGCY 1 cut(s) 282
BfrI CTTAAG 1 cut(s) 545
BisI GCNGC 3 cut(s) 8, 120, 201
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 3 cut(s) 9, 121, 202
Bme1390I CCNGG 1 cut(s) 313
BmeT110I CYCGRG 1 cut(s) 572
BmrFI CCNGG 1 cut(s) 313
BmsI GCATC 4 cut(s) 19, 29, 67, 577
BpmI CTGGAG 1 cut(s) 57
Bpu1102I GCTNAGC 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 1 cut(s) 578
Bse1I ACTGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 313
BseGI GGATG 2 cut(s) 44, 568
BseLI CCNNNNNNNGG 1 cut(s) 578
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 3 cut(s) 150, 247, 321
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 552
BseXI GCAGC 3 cut(s) 19, 131, 187
BsgI GTGCAG 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 572
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 578
BsmAI GTCTC 2 cut(s) 155, 234
BsmFI GGGAC 1 cut(s) 155
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 572
Bsp1286I GDGCHC 1 cut(s) 222
Bsp1407I TGTACA 1 cut(s) 420
Bsp143I GATC 3 cut(s) 54, 171, 592
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 2 cut(s) 198, 473
BspCNI CTCAG 3 cut(s) 151, 246, 322
BspPI GGATC 1 cut(s) 166
BspTI CTTAAG 1 cut(s) 545
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 42
BsrGI TGTACA 1 cut(s) 420
BsrI ACTGG 1 cut(s) 66
BssMI GATC 3 cut(s) 54, 171, 592
BssNI GRCGYC 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 313
BstACI GRCGYC 1 cut(s) 132
BstAFI CTTAAG 1 cut(s) 545
BstAPI GCANNNNNTGC 1 cut(s) 28
BstAUI TGTACA 1 cut(s) 420
BstC8I GCNNGC 4 cut(s) 24, 82, 86, 383
BstDEI CTNAG 3 cut(s) 159, 233, 330
BstF5I GGATG 2 cut(s) 44, 568
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 2 cut(s) 281, 440
BstKTI GATC 3 cut(s) 57, 174, 595
BstMAI GTCTC 2 cut(s) 155, 234
BstMBI GATC 3 cut(s) 54, 171, 592
BstMWI GCNNNNNNNGC 4 cut(s) 28, 94, 200, 479
BstNI CCWGG 1 cut(s) 313
BstNSI RCATGY 2 cut(s) 229, 385
BstSCI CCNGG 1 cut(s) 311
BstV1I GCAGC 3 cut(s) 19, 131, 187
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BtsCI GGATG 2 cut(s) 44, 568
BtsI GCAGTG 2 cut(s) 189, 552
BtsIMutI CAGTG 4 cut(s) 189, 344, 552, 592
Cac8I GCNNGC 4 cut(s) 24, 82, 86, 383
CfoI GCGC 2 cut(s) 281, 440
CseI GACGC 1 cut(s) 140
CsiI ACCWGGT 1 cut(s) 311
Csp6I GTAC 1 cut(s) 421
CviAII CATG 4 cut(s) 167, 226, 382, 441
CviJI RGCY 9 cut(s) 88, 220, 237, 243, 329, 334, 410, 495, 510
CviKI_1 RGCY 9 cut(s) 88, 220, 237, 243, 329, 334, 410, 495, 510
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 3 cut(s) 159, 233, 330
DpnI GATC 3 cut(s) 56, 173, 594
DpnII GATC 3 cut(s) 54, 171, 592
Ecl136II GAGCTC 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 572
EcoICRI GAGCTC 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 311
EcoT22I ATGCAT 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 222
FaeI CATG 4 cut(s) 170, 229, 385, 444
FaqI GGGAC 1 cut(s) 155
FatI CATG 4 cut(s) 166, 225, 381, 440
FbaI TGATCA 1 cut(s) 592
Fnu4HI GCNGC 3 cut(s) 8, 120, 201
FokI GGATG 2 cut(s) 51, 555
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 3 cut(s) 8, 120, 201
FspBI CTAG 3 cut(s) 14, 306, 513
GlaI GCGC 2 cut(s) 280, 439
GluI GCNGC 3 cut(s) 8, 120, 201
GsuI CTGGAG 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 282
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 140
HhaI GCGC 2 cut(s) 281, 440
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 4 cut(s) 170, 229, 385, 444
Hin6I GCGC 2 cut(s) 279, 438
HinP1I GCGC 2 cut(s) 279, 438
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 2 cut(s) 125, 582
HpaII CCGG 1 cut(s) 32
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 2 cut(s) 421, 429
Hpy188I TCNGA 3 cut(s) 113, 130, 287
Hpy188III TCNNGA 3 cut(s) 14, 74, 572
Hpy8I GTNNAC 2 cut(s) 421, 429
Hpy99I CGWCG 2 cut(s) 134, 260
HpyAV CCTTC 2 cut(s) 29, 292
HpyCH4V TGCA 6 cut(s) 7, 22, 42, 84, 482, 568
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 94, 200, 479
HpyF3I CTNAG 3 cut(s) 159, 233, 330
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 4 cut(s) 170, 229, 385, 444
HspAI GCGC 2 cut(s) 279, 438
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 3 cut(s) 54, 171, 592
Lsp1109I GCAGC 3 cut(s) 19, 131, 187
LweI GCATC 4 cut(s) 19, 29, 67, 577
MabI ACCWGGT 1 cut(s) 311
MaeI CTAG 3 cut(s) 14, 306, 513
MalI GATC 3 cut(s) 56, 173, 594
MboI GATC 3 cut(s) 54, 171, 592
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 2 cut(s) 357, 369
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 6 cut(s) 81, 205, 260, 313, 530, 572
Mph1103I ATGCAT 1 cut(s) 44
MseI TTAA 1 cut(s) 546
MspA1I CMGCKG 1 cut(s) 200
MspCI CTTAAG 1 cut(s) 545
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 313
MvaI CCWGG 1 cut(s) 313
MwoI GCNNNNNNNGC 4 cut(s) 28, 94, 200, 479
NdeII GATC 3 cut(s) 54, 171, 592
NlaIII CATG 4 cut(s) 170, 229, 385, 444
NsiI ATGCAT 1 cut(s) 44
NspI RCATGY 2 cut(s) 229, 385
PaeI GCATGC 1 cut(s) 385
PciI ACATGT 1 cut(s) 225
PfeI GAWTC 2 cut(s) 125, 582
PkrI GCNGC 3 cut(s) 9, 121, 202
PscI ACATGT 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 311
PspGI CCWGG 1 cut(s) 311
PsuI RGATCY 1 cut(s) 171
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 3 cut(s) 8, 120, 201
Sau3AI GATC 3 cut(s) 54, 171, 592
ScrFI CCNGG 1 cut(s) 313
SduI GDGCHC 1 cut(s) 222
SetI ASST 6 cut(s) 222, 307, 317, 331, 336, 412
SexAI ACCWGGT 1 cut(s) 311
SfaNI GCATC 4 cut(s) 19, 29, 67, 577
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
SphI GCATGC 1 cut(s) 385
Sse9I AATT 2 cut(s) 357, 369
SsiI CCGC 2 cut(s) 198, 473
SspMI CTAG 3 cut(s) 14, 306, 513
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 311
TaqI TCGA 2 cut(s) 255, 318
TasI AATT 2 cut(s) 357, 369
TatI WGTACW 1 cut(s) 420
TfiI GAWTC 2 cut(s) 125, 582
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 4 cut(s) 196, 344, 559, 592
TseI GCWGC 3 cut(s) 7, 119, 200
TspDTI ATGAA 1 cut(s) 519
TspRI CASTG 4 cut(s) 196, 344, 559, 592
Vha464I CTTAAG 1 cut(s) 545
XapI RAATTY 1 cut(s) 357
XbaI TCTAGA 1 cut(s) 13
XceI RCATGY 2 cut(s) 229, 385
XspI CTAG 3 cut(s) 14, 306, 513
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.