Rh3DG122000

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000189
Physical Location & Seq
Reverse (-)
10342657 .. 10342944
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG122000.1

Sequence Viewer

Length: 288 bp
ATGGAGAACGCAGCAGTGATGATGGACTTGCAGGCATTGCCGGAAGGCTGCATAGCCAACGTGATCTCGCTAACAACTCCTCGAAACGCGTGCAGACTATCGTTGATTTCGAGGAATTTCAAGTCGGCGGCGGACTCCGACTCCGTTTGGGTCAAGTTCCTTCCGCATGAGACCAGTGAGATCCTATCCCACTCCGAATCTGCAATCCACGCCAAATCCAAGAAGGAGCTTTACTTCACTTTCTCTCACAACCCCATCTTCATCGACGATAGCAAGATGGTAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

95

Amino Acids

10.59

Weight (kDa)

6.03

Isoelectric Point (pI)

45.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 11 - 52 1.8e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 89
AciI CCGC 3 cut(s) 128, 131, 164
AclWI GGATC 1 cut(s) 175
AcsI RAATTY 1 cut(s) 115
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 1 cut(s) 175
ApeKI GCWGC 2 cut(s) 11, 48
ApoI RAATTY 1 cut(s) 115
BarI GAAGNNNNNNTAC 2 cut(s) 215, 247
BbvI GCAGC 2 cut(s) 23, 35
BccI CCATC 3 cut(s) 16, 263, 271
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BcoDI GTCTC 1 cut(s) 164
BisI GCNGC 3 cut(s) 12, 49, 129
BlsI GCNGC 3 cut(s) 13, 50, 130
BsaI GGTCTC 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bse1I ACTGG 1 cut(s) 174
Bse3DI GCAATG 1 cut(s) 35
BseMI GCAATG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 2 cut(s) 23, 35
BsgI GTGCAG 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 164
Bsp143I GATC 2 cut(s) 63, 180
BspACI CCGC 3 cut(s) 128, 131, 164
BspFNI CGCG 1 cut(s) 89
BspPI GGATC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 35
BsrI ACTGG 1 cut(s) 174
BssMI GATC 2 cut(s) 63, 180
BstAPI GCANNNNNTGC 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 33, 91
BstDEI CTNAG 1 cut(s) 285
BstFNI CGCG 1 cut(s) 89
BstKTI GATC 2 cut(s) 66, 183
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 2 cut(s) 63, 180
BstMWI GCNNNNNNNGC 2 cut(s) 37, 209
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 2 cut(s) 23, 35
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 2 cut(s) 21, 181
Cac8I GCNNGC 2 cut(s) 33, 91
CviAII CATG 1 cut(s) 167
CviJI RGCY 3 cut(s) 48, 56, 229
CviKI_1 RGCY 3 cut(s) 48, 56, 229
DdeI CTNAG 1 cut(s) 285
DpnI GATC 2 cut(s) 65, 182
DpnII GATC 2 cut(s) 63, 180
EciI GGCGGA 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 164
FaeI CATG 1 cut(s) 170
FaiI YATR 2 cut(s) 53, 168
FatI CATG 1 cut(s) 166
Fnu4HI GCNGC 3 cut(s) 12, 49, 129
Fsp4HI GCNGC 3 cut(s) 12, 49, 129
GluI GCNGC 3 cut(s) 12, 49, 129
HapII CCGG 1 cut(s) 41
Hin1II CATG 1 cut(s) 170
HinfI GANTC 3 cut(s) 134, 140, 197
HpaII CCGG 1 cut(s) 41
Hpy188I TCNGA 2 cut(s) 139, 196
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 3 cut(s) 38, 170, 217
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 4 cut(s) 31, 51, 93, 203
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 209
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 1 cut(s) 170
Kzo9I GATC 2 cut(s) 63, 180
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 3 cut(s) 17, 54, 187
Lsp1109I GCAGC 2 cut(s) 23, 35
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 280
MalI GATC 2 cut(s) 65, 182
MboI GATC 2 cut(s) 63, 180
MboII GAAGA 1 cut(s) 250
MflI RGATCY 1 cut(s) 180
MluCI AATT 1 cut(s) 115
MluI ACGCGT 1 cut(s) 87
MlyI GAGTC 2 cut(s) 128, 134
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 2 cut(s) 90, 105
MspI CCGG 1 cut(s) 41
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 37, 209
NdeII GATC 2 cut(s) 63, 180
NlaIII CATG 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 3 cut(s) 13, 50, 130
PleI GAGTC 2 cut(s) 128, 134
PpsI GAGTC 2 cut(s) 128, 134
PsuI RGATCY 1 cut(s) 180
SatI GCNGC 3 cut(s) 12, 49, 129
Sau3AI GATC 2 cut(s) 63, 180
SchI GAGTC 2 cut(s) 128, 134
SetI ASST 2 cut(s) 63, 231
Sse9I AATT 1 cut(s) 115
SsiI CCGC 3 cut(s) 128, 131, 164
TaiI ACGT 1 cut(s) 63
TaqI TCGA 3 cut(s) 82, 110, 264
TasI AATT 1 cut(s) 115
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 197
TscAI CASTG 2 cut(s) 21, 181
TseI GCWGC 2 cut(s) 11, 48
TspDTI ATGAA 1 cut(s) 250
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 2 cut(s) 21, 181
XapI RAATTY 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.