Rmu_co8385575.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8385575.1
OG0000189
Physical Location & Seq
Reverse (-)
1 .. 767
767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8385575.1_g000001.1.cds

Sequence Viewer

Length: 276 bp
atgcagcagaggcagctggacttgcaagccttgccggaaggatgcatagccaacgtgatctcgttgaccagtcctccagatgcatgcaggctctctttgctttctaagattatcaggtcggcggcagaatcagacgccgtttgggataaattcattccgcccgagacacaaacgatcctatcccagccaaattccctctctttcccttccaaatccaagaaggacctctacatggctctctgcgacaatcccgtcctgatcaacgagggcaatatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

92

Amino Acids

10.12

Weight (kDa)

4.85

Isoelectric Point (pI)

59.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AciI CCGC 2 cut(s) 122, 158
AclWI GGATC 1 cut(s) 169
AcsI RAATTY 2 cut(s) 149, 190
AcyI GRCGYC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 232
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 1 cut(s) 169
Ama87I CYCGRG 1 cut(s) 161
ApeKI GCWGC 2 cut(s) 4, 13
ApoI RAATTY 2 cut(s) 149, 190
AspS9I GGNCC 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 1 cut(s) 223
BarI GAAGNNNNNNTAC 2 cut(s) 212, 244
BbvI GCAGC 2 cut(s) 16, 25
BceAI ACGGC 1 cut(s) 122
BclI TGATCA 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 158
BisI GCNGC 3 cut(s) 5, 14, 123
BlsI GCNGC 3 cut(s) 6, 15, 124
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 223
BmsI GCATC 2 cut(s) 32, 70
BpmI CTGGAG 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse1I ACTGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 232
BseNI ACTGG 1 cut(s) 69
BseXI GCAGC 2 cut(s) 16, 25
BseYI CCCAGC 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 158
BsoBI CYCGRG 1 cut(s) 161
Bsp143I GATC 3 cut(s) 57, 174, 258
BspACI CCGC 2 cut(s) 122, 158
BspPI GGATC 1 cut(s) 169
BsrI ACTGG 1 cut(s) 69
BssMI GATC 3 cut(s) 57, 174, 258
BssNI GRCGYC 1 cut(s) 135
BstACI GRCGYC 1 cut(s) 135
BstAPI GCANNNNNTGC 1 cut(s) 31
BstC8I GCNNGC 3 cut(s) 27, 85, 89
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 47
BstKTI GATC 3 cut(s) 60, 177, 261
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 3 cut(s) 57, 174, 258
BstMWI GCNNNNNNNGC 5 cut(s) 10, 13, 22, 31, 97
BstNSI RCATGY 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 16, 25
BtsCI GGATG 1 cut(s) 47
Cac8I GCNNGC 3 cut(s) 27, 85, 89
Cfr13I GGNCC 1 cut(s) 223
CseI GACGC 1 cut(s) 143
CviAII CATG 2 cut(s) 84, 232
CviJI RGCY 6 cut(s) 16, 29, 50, 91, 187, 236
CviKI_1 RGCY 6 cut(s) 16, 29, 50, 91, 187, 236
DdeI CTNAG 1 cut(s) 105
DpnI GATC 3 cut(s) 59, 176, 260
DpnII GATC 3 cut(s) 57, 174, 258
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EciI GGCGGA 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 223
Eco88I CYCGRG 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 223
EcoT22I ATGCAT 2 cut(s) 47, 85
FaeI CATG 2 cut(s) 87, 235
FaiI YATR 4 cut(s) 47, 85, 233, 275
FatI CATG 2 cut(s) 83, 231
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 3 cut(s) 5, 14, 123
FokI GGATG 1 cut(s) 54
Fsp4HI GCNGC 3 cut(s) 5, 14, 123
GluI GCNGC 3 cut(s) 5, 14, 123
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 60
HapII CCGG 1 cut(s) 35
HgaI GACGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 2 cut(s) 87, 235
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 2 cut(s) 77, 256
Hpy8I GTNNAC 1 cut(s) 66
HpyAV CCTTC 3 cut(s) 32, 214, 216
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 5 cut(s) 4, 25, 45, 83, 87
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 13, 22, 31, 97
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 2 cut(s) 87, 235
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 3 cut(s) 57, 174, 258
LpnPI CCDG 8 cut(s) 2, 48, 73, 82, 90, 100, 197, 269
Lsp1109I GCAGC 2 cut(s) 16, 25
LweI GCATC 2 cut(s) 32, 70
MaeII ACGT 1 cut(s) 54
MalI GATC 3 cut(s) 59, 176, 260
MboI GATC 3 cut(s) 57, 174, 258
MluCI AATT 2 cut(s) 149, 190
MnlI CCTC 5 cut(s) 3, 84, 206, 236, 259
Mph1103I ATGCAT 2 cut(s) 47, 85
MspA1I CMGCKG 1 cut(s) 16
MspI CCGG 1 cut(s) 35
MwoI GCNNNNNNNGC 5 cut(s) 10, 13, 22, 31, 97
NdeII GATC 3 cut(s) 57, 174, 258
NlaIII CATG 2 cut(s) 87, 235
NsiI ATGCAT 2 cut(s) 47, 85
NspI RCATGY 1 cut(s) 87
PaeI GCATGC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 3 cut(s) 6, 15, 124
PpuMI RGGWCCY 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 223
PspFI CCCAGC 1 cut(s) 183
PspPI GGNCC 1 cut(s) 223
PspPPI RGGWCCY 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 16
SatI GCNGC 3 cut(s) 5, 14, 123
Sau3AI GATC 3 cut(s) 57, 174, 258
Sau96I GGNCC 1 cut(s) 223
SetI ASST 4 cut(s) 18, 57, 119, 228
SfaNI GCATC 2 cut(s) 32, 70
SinI GGWCC 1 cut(s) 223
SphI GCATGC 1 cut(s) 87
Sse9I AATT 2 cut(s) 149, 190
SsiI CCGC 2 cut(s) 122, 158
TaiI ACGT 1 cut(s) 57
TasI AATT 2 cut(s) 149, 190
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 1 cut(s) 128
TseI GCWGC 2 cut(s) 4, 13
TspDTI ATGAA 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 2 cut(s) 149, 190
XceI RCATGY 1 cut(s) 87
Zsp2I ATGCAT 2 cut(s) 47, 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.