Rorug02G0614800

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000189
Physical Location & Seq
Forward (+)
73241067 .. 73241863
797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0614800.1

Sequence Viewer

Length: 396 bp
ATGGATTTCTGCAGTGTTGAAGAGGACATGGTGGAGGGATTCCCTTGTGAAGTTCCCGAAGAAGACGTGGATGTGAAGGTCAACGTTAAGGATAATCCTAACCTTATTGACTGTGTCTTTTCGGACGGATTTGTTGTACAAACTGGTGATCTGGAAGGACCTGCAGAGGGTTTAATTGATCCAAGTACAGAGAAAACCAGGATGATACCTTTAGAAATCTCTGTAGATGGAGAGAAAGGCACCCTTTTACGGTGCAACTTTGGAAGTAAGATTCCTCCTCCCAGTCACTCCCTCTCTCCCTTTGAATTCGGGCTATACACAGCTCAGTCAAAGCTTCCATTTAACGCATTTGGAACAATGGCAATTGCCAGAGATGAGAGAAACGTTAATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

131

Amino Acids

14.34

Weight (kDa)

4.2

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 169
AccB1I GGYRCC 1 cut(s) 239
AclI AACGTT 2 cut(s) 84, 384
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 1 cut(s) 305
AfaI GTAC 2 cut(s) 138, 187
AfiI CCNNNNNNNGG 2 cut(s) 167, 249
AgsI TTSAA 2 cut(s) 20, 305
AjiI CACGTC 1 cut(s) 67
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 2 cut(s) 323, 334
AluI AGCT 2 cut(s) 323, 334
AlwI GGATC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 158
AvaII GGWCC 1 cut(s) 158
BanI GGYRCC 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 69
BccI CCATC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 199
BfmI CTRYAG 3 cut(s) 10, 162, 222
BfuAI ACCTGC 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 158
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 199
BmrI ACTGGG 1 cut(s) 276
BmuI ACTGGG 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 69
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 249
Bse1I ACTGG 2 cut(s) 148, 282
BseBI CCWGG 1 cut(s) 199
BseGI GGATG 2 cut(s) 76, 207
BseLI CCNNNNNNNGG 2 cut(s) 167, 249
BseMII CTCAG 1 cut(s) 338
BseNI ACTGG 2 cut(s) 148, 282
BseRI GAGGAG 1 cut(s) 267
BshNI GGYRCC 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 167, 249
Bsp1407I TGTACA 1 cut(s) 136
Bsp143I GATC 2 cut(s) 148, 178
BspCNI CTCAG 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 241
BspMAI CTGCAG 2 cut(s) 14, 166
BspMI ACCTGC 1 cut(s) 169
BspPI GGATC 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 239
BsrGI TGTACA 1 cut(s) 136
BsrI ACTGG 2 cut(s) 148, 282
BssMI GATC 2 cut(s) 148, 178
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 2 cut(s) 113, 252
Bst6I CTCTTC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 324
BstF5I GGATG 2 cut(s) 76, 207
BstKTI GATC 2 cut(s) 151, 181
BstMBI GATC 2 cut(s) 148, 178
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 197
BstSFI CTRYAG 3 cut(s) 10, 162, 222
BstV2I GAAGAC 1 cut(s) 69
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 2 cut(s) 76, 207
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 19
BveI ACCTGC 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 158
Csp6I GTAC 2 cut(s) 137, 186
CviAII CATG 1 cut(s) 28
CviJI RGCY 3 cut(s) 313, 323, 334
CviKI_1 RGCY 3 cut(s) 313, 323, 334
CviQI GTAC 2 cut(s) 137, 186
DdeI CTNAG 1 cut(s) 324
DpnI GATC 2 cut(s) 150, 180
DpnII GATC 2 cut(s) 148, 178
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 197
FaeI CATG 1 cut(s) 31
FaiI YATR 2 cut(s) 29, 316
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FatI CATG 1 cut(s) 27
FokI GGATG 2 cut(s) 83, 214
Hin1II CATG 1 cut(s) 31
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 2 cut(s) 39, 271
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 2 cut(s) 56, 152
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 70, 149
HpyCH4III ACNGT 2 cut(s) 113, 252
HpyCH4IV ACGT 3 cut(s) 66, 84, 384
HpyCH4V TGCA 3 cut(s) 12, 164, 255
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 3 cut(s) 66, 84, 384
Hsp92II CATG 1 cut(s) 31
Kzo9I GATC 2 cut(s) 148, 178
LpnPI CCDG 7 cut(s) 129, 137, 174, 184, 211, 295, 382
MaeII ACGT 3 cut(s) 66, 84, 384
MaeIII GTNAC 1 cut(s) 284
MalI GATC 2 cut(s) 150, 180
MboI GATC 2 cut(s) 148, 178
MboII GAAGA 3 cut(s) 32, 71, 74
MfeI CAATTG 1 cut(s) 363
MluCI AATT 3 cut(s) 174, 305, 363
MnlI CCTC 6 cut(s) 16, 28, 160, 285, 288, 302
MseI TTAA 4 cut(s) 87, 173, 342, 387
MspR9I CCNGG 1 cut(s) 199
MunI CAATTG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 199
NdeII GATC 2 cut(s) 148, 178
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 39, 271
PflFI GACNNNGTC 1 cut(s) 113
PpuMI RGGWCCY 1 cut(s) 158
Psp1406I AACGTT 2 cut(s) 84, 384
Psp5II RGGWCCY 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 1 cut(s) 158
PspPPI RGGWCCY 1 cut(s) 158
PstI CTGCAG 2 cut(s) 14, 166
PsyI GACNNNGTC 1 cut(s) 113
RsaI GTAC 2 cut(s) 138, 187
RsaNI GTAC 2 cut(s) 137, 186
SaqAI TTAA 4 cut(s) 87, 173, 342, 387
Sau3AI GATC 2 cut(s) 148, 178
Sau96I GGNCC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 199
SetI ASST 9 cut(s) 69, 81, 87, 105, 163, 211, 325, 336, 387
SfcI CTRYAG 3 cut(s) 10, 162, 222
SinI GGWCC 1 cut(s) 158
Sse9I AATT 3 cut(s) 174, 305, 363
StyD4I CCNGG 1 cut(s) 197
TaaI ACNGT 2 cut(s) 113, 252
TaiI ACGT 3 cut(s) 69, 87, 387
TasI AATT 3 cut(s) 174, 305, 363
TatI WGTACW 2 cut(s) 136, 185
TfiI GAWTC 2 cut(s) 39, 271
Tru1I TTAA 4 cut(s) 87, 173, 342, 387
Tru9I TTAA 4 cut(s) 87, 173, 342, 387
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 284
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 1 cut(s) 19
Tth111I GACNNNGTC 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.