Rh3AG026200

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000189
Physical Location & Seq
Forward (+)
1784448 .. 1789063
4616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG026200.1

Sequence Viewer

Length: 462 bp
ATGGATCTGCACCAGTTACCGGAGGGCTGCATAGCCAAGATAGTATCGTTGACGACTCCTGAAGATGCCTGCCGCCTGTCGTTACTCTTCCGGCGAATCTGGATTATTGGCCGCCAGTTCCAAGAAGGAGGCAACAAACCTGTCCTCATCAACGACGGTAAATTGAGCTTTTCACTGGACAAATGGAGTGGGAAAAAATGTTACATGATATCTGCAAGAGAGCTTGGTATTGTCTGGGGCGATACTCCCCAGTATTGGAGATGGACTTCTCATCCTGAATCCAGTACACTTGGATTAAGCACAGAGTGCTCTCCAGTCTCGCATCCTCCTGCTGCTGTAGTCTGCGATTTAGTTGATGACTTATCAAAGTCGATGGAACAAATAGACATTTTCGACATTGAACCACCGCCACTTATTCGTGAGAACTCAGGCTTTAGTTTCTTGTTGCCGCGTGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

153

Amino Acids

17.17

Weight (kDa)

5.17

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 65 - 95 1.5e-10 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 451
AciI CCGC 4 cut(s) 73, 112, 407, 449
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 109
AcuI CTGAAG 1 cut(s) 81
AdeI CACNNNGTG 1 cut(s) 306
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 2 cut(s) 19, 255
AgsI TTSAA 1 cut(s) 401
AluBI AGCT 2 cut(s) 168, 223
AluI AGCT 2 cut(s) 168, 223
Alw21I GWGCWC 1 cut(s) 311
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 2 cut(s) 27, 332
Bbv12I GWGCWC 1 cut(s) 311
BbvI GCAGC 2 cut(s) 14, 319
BccI CCATC 2 cut(s) 255, 367
BcoDI GTCTC 1 cut(s) 322
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 5 cut(s) 28, 73, 112, 333, 449
BlsI GCNGC 5 cut(s) 29, 74, 113, 334, 450
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 2 cut(s) 55, 331
BmuI ACTGGG 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 255
Bse1I ACTGG 6 cut(s) 13, 115, 180, 250, 282, 314
BseGI GGATG 2 cut(s) 271, 322
BseLI CCNNNNNNNGG 2 cut(s) 19, 255
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 6 cut(s) 13, 115, 180, 250, 282, 314
BseXI GCAGC 2 cut(s) 14, 319
Bsh1236I CGCG 1 cut(s) 451
BshFI GGCC 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 311
BsiSI CCGG 2 cut(s) 20, 91
BslI CCNNNNNNNGG 2 cut(s) 19, 255
BsmAI GTCTC 1 cut(s) 322
BsnI GGCC 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 4 cut(s) 73, 112, 407, 449
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 440
BspFNI CGCG 1 cut(s) 451
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 6 cut(s) 13, 115, 180, 250, 282, 314
BssMI GATC 1 cut(s) 4
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 92
BstAPI GCANNNNNTGC 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 70, 453
BstDEI CTNAG 1 cut(s) 427
BstF5I GGATG 2 cut(s) 271, 322
BstFNI CGCG 1 cut(s) 451
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstSFI CTRYAG 1 cut(s) 336
BstUI CGCG 1 cut(s) 451
BstV1I GCAGC 2 cut(s) 14, 319
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 2 cut(s) 271, 322
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 70, 453
Csp6I GTAC 1 cut(s) 285
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CviAII CATG 1 cut(s) 205
CviJI RGCY 6 cut(s) 27, 35, 111, 168, 223, 432
CviKI_1 RGCY 6 cut(s) 27, 35, 111, 168, 223, 432
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 1 cut(s) 427
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DraIII CACNNNGTG 1 cut(s) 306
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco32I GATATC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 81
EcoRV GATATC 1 cut(s) 210
FaeI CATG 1 cut(s) 208
FaiI YATR 2 cut(s) 32, 206
FatI CATG 1 cut(s) 204
Fnu4HI GCNGC 5 cut(s) 28, 73, 112, 333, 449
FokI GGATG 2 cut(s) 258, 309
Fsp4HI GCNGC 5 cut(s) 28, 73, 112, 333, 449
GluI GCNGC 5 cut(s) 28, 73, 112, 333, 449
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 1 cut(s) 111
HapII CCGG 2 cut(s) 20, 91
Hin1II CATG 1 cut(s) 208
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 3 cut(s) 55, 96, 278
HpaII CCGG 2 cut(s) 20, 91
Hpy166II GTNNAC 2 cut(s) 51, 287
Hpy188III TCNNGA 4 cut(s) 59, 100, 275, 419
Hpy8I GTNNAC 2 cut(s) 51, 287
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 4 cut(s) 10, 30, 215, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
HpyF3I CTNAG 1 cut(s) 427
Hsp92II CATG 1 cut(s) 208
Kzo9I GATC 1 cut(s) 4
Lsp1109I GCAGC 2 cut(s) 14, 319
LweI GCATC 2 cut(s) 55, 331
MaeIII GTNAC 3 cut(s) 15, 81, 200
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 2 cut(s) 74, 79
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 1 cut(s) 161
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 4 cut(s) 16, 122, 155, 336
MseI TTAA 1 cut(s) 296
MspI CCGG 2 cut(s) 20, 91
MvnI CGCG 1 cut(s) 451
MwoI GCNNNNNNNGC 1 cut(s) 306
NdeII GATC 1 cut(s) 4
NlaIII CATG 1 cut(s) 208
PfeI GAWTC 2 cut(s) 96, 278
PkrI GCNGC 5 cut(s) 29, 74, 113, 334, 450
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 5 cut(s) 28, 73, 112, 333, 449
Sau3AI GATC 1 cut(s) 4
SchI GAGTC 1 cut(s) 49
SduI GDGCHC 1 cut(s) 311
SetI ASST 3 cut(s) 142, 170, 225
SfaNI GCATC 2 cut(s) 55, 331
SfcI CTRYAG 1 cut(s) 336
Sse9I AATT 1 cut(s) 161
SsiI CCGC 4 cut(s) 73, 112, 407, 449
TaaI ACNGT 1 cut(s) 158
TaqI TCGA 2 cut(s) 371, 393
TasI AATT 1 cut(s) 161
TatI WGTACW 1 cut(s) 284
TauI GCSGC 3 cut(s) 75, 114, 451
TfiI GAWTC 2 cut(s) 96, 278
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TscAI CASTG 1 cut(s) 180
TseI GCWGC 2 cut(s) 27, 332
TspRI CASTG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.