Rh3DG012400

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000189
Physical Location & Seq
Forward (+)
735040 .. 735858
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG012400.1

Sequence Viewer

Length: 330 bp
ATGCAGCAGCCACCGCTGGACTTACAAGCTTTGCCGGAAGGTTGCATTGCCAACGTGATCTTGTTGACCAGTCCTCCAGATGCATGCAGGGTCTCCTTGCTTTCTATGGTTATCAGGTCGGCCGCTGAATCCGACGCCGTTTGGGACAAGTTCATTCCGCCTGAGACATACACGATCCTTTTCCAGTCCAATTCCCTCTCCTCTACCCCTCCCAAATCAGAGAAGGAGCTCTACATGGCTCTCTGCGACAACCCCGTCCTCATCGACGAGGGCAATATGAGCTTTTCACTGGACAAATGGAGTGGGAAGAAGTGCTATATGCCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

109

Amino Acids

12.05

Weight (kDa)

4.46

Isoelectric Point (pI)

68.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 254
AciI CCGC 3 cut(s) 14, 123, 158
AclWI GGATC 1 cut(s) 169
AcoI YGGCCR 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 135
AluBI AGCT 3 cut(s) 29, 229, 282
AluI AGCT 3 cut(s) 29, 229, 282
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 2 cut(s) 97, 158
AlwI GGATC 1 cut(s) 169
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 2 cut(s) 4, 7
BanII GRGCYC 1 cut(s) 231
BarI GAAGNNNNNNTAC 2 cut(s) 215, 247
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 16, 19
BceAI ACGGC 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 97, 158
BisI GCNGC 3 cut(s) 5, 8, 123
BlsI GCNGC 3 cut(s) 6, 9, 124
BmsI GCATC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bse1I ACTGG 3 cut(s) 69, 184, 294
Bse3DI GCAATG 1 cut(s) 45
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 3 cut(s) 69, 184, 294
BseRI GAGGAG 1 cut(s) 190
BseX3I CGGCCG 1 cut(s) 120
BseXI GCAGC 2 cut(s) 16, 19
Bsh1285I CGRYCG 1 cut(s) 123
BshFI GGCC 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 35
BslFI GGGAC 1 cut(s) 158
BsmAI GTCTC 2 cut(s) 97, 158
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 1 cut(s) 122
Bso31I GGTCTC 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 2 cut(s) 57, 174
BspACI CCGC 3 cut(s) 14, 123, 158
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 154
BspPI GGATC 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 3 cut(s) 69, 184, 294
BssMI GATC 2 cut(s) 57, 174
BssNI GRCGYC 1 cut(s) 135
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 1 cut(s) 162
BstKTI GATC 2 cut(s) 60, 177
BstMAI GTCTC 2 cut(s) 97, 158
BstMBI GATC 2 cut(s) 57, 174
BstMCI CGRYCG 1 cut(s) 123
BstMWI GCNNNNNNNGC 2 cut(s) 13, 279
BstNSI RCATGY 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 16, 19
BstZI CGGCCG 1 cut(s) 120
BsuRI GGCC 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 287
Cac8I GCNNGC 1 cut(s) 85
CseI GACGC 1 cut(s) 143
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviAII CATG 2 cut(s) 84, 235
CviJI RGCY 6 cut(s) 10, 29, 122, 229, 239, 282
CviKI_1 RGCY 6 cut(s) 10, 29, 122, 229, 239, 282
DdeI CTNAG 1 cut(s) 162
DpnI GATC 2 cut(s) 59, 176
DpnII GATC 2 cut(s) 57, 174
DrdI GACNNNNNNGTC 1 cut(s) 254
DseDI GACNNNNNNGTC 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 120
EagI CGGCCG 1 cut(s) 120
EciI GGCGGA 1 cut(s) 147
Ecl136II GAGCTC 1 cut(s) 229
EclXI CGGCCG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 97
Eco52I CGGCCG 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 2 cut(s) 87, 238
FaiI YATR 9 cut(s) 85, 107, 169, 236, 278, 318, 320, 326, 328
FaqI GGGAC 1 cut(s) 158
FatI CATG 2 cut(s) 83, 234
Fnu4HI GCNGC 3 cut(s) 5, 8, 123
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 3 cut(s) 5, 8, 123
GluI GCNGC 3 cut(s) 5, 8, 123
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 1 cut(s) 122
HapII CCGG 1 cut(s) 35
HgaI GACGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 2 cut(s) 87, 238
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 2 cut(s) 133, 220
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 1 cut(s) 66
Hpy99I CGWCG 2 cut(s) 137, 269
HpyAV CCTTC 2 cut(s) 32, 217
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 4 cut(s) 4, 45, 83, 87
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 279
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 2 cut(s) 87, 238
Kzo9I GATC 2 cut(s) 57, 174
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 9 cut(s) 2, 48, 73, 82, 90, 100, 174, 197, 275
Lsp1109I GCAGC 2 cut(s) 16, 19
LweI GCATC 1 cut(s) 70
MaeII ACGT 1 cut(s) 54
MalI GATC 2 cut(s) 59, 176
MboI GATC 2 cut(s) 57, 174
MboII GAAGA 1 cut(s) 319
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 1 cut(s) 190
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 6 cut(s) 84, 206, 211, 219, 262, 269
Mph1103I ATGCAT 1 cut(s) 85
MspA1I CMGCKG 2 cut(s) 16, 125
MspI CCGG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 13, 279
NdeII GATC 2 cut(s) 57, 174
NlaIII CATG 2 cut(s) 87, 238
NsiI ATGCAT 1 cut(s) 85
NspI RCATGY 1 cut(s) 87
PaeI GCATGC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 3 cut(s) 6, 9, 124
Psp124BI GAGCTC 1 cut(s) 231
SacI GAGCTC 1 cut(s) 231
SatI GCNGC 3 cut(s) 5, 8, 123
Sau3AI GATC 2 cut(s) 57, 174
SduI GDGCHC 1 cut(s) 231
SetI ASST 6 cut(s) 31, 43, 57, 119, 231, 284
SfaNI GCATC 1 cut(s) 70
SphI GCATGC 1 cut(s) 87
Sse9I AATT 1 cut(s) 190
SsiI CCGC 3 cut(s) 14, 123, 158
SstI GAGCTC 1 cut(s) 231
TaiI ACGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 264
TasI AATT 1 cut(s) 190
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 1 cut(s) 128
TscAI CASTG 1 cut(s) 294
TseI GCWGC 2 cut(s) 4, 7
TspDTI ATGAA 1 cut(s) 142
TspRI CASTG 1 cut(s) 294
XceI RCATGY 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.