RLG00000025903

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000189
Physical Location & Seq
Reverse (-)
49081236 .. 49082546
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025903

Sequence Viewer

Length: 888 bp
ATGGAGAACGCGGCGGTAATGATGGACTTGCAAGCGTTGCCGGAAGGCTGCATAGCCAAAGTGATCTCGCTGACGACTCCTCGTGAAGCATGCATGCTGTCGTTGATTTCGAGGGATTTCAAGTCGGCGGCGGATTCCGACTCCGTTTGGGACATGTTCCTTCCGCATGAGACCAATGAGATCCTATCCCACTCCAAATCTTCAATCCACGCCAAATCCAAGAAGGAGCTTTACCTCACTCTCTTTCGCAACCCCATCCTCATCGACGATGGCAAGATGAGCTTTTCACTTGACAAATGGAGTGGGAAGAAACGCTATATGATAGCTGCGAGGCGCCTTCGGATTGCTTGGGGTGAAACTCTACGATATTGGAAATGGAAATCTCTGCCTGAGTCCAGGTTTAAGGAGGCAGTCAAGCTTCGTGTTGTATGTTGGCTTGAAATCCGTGGGAGAATCGAGACACGCATGCTGTCCCCATGCACGACGTATAAAGCTTATCTGGTGTACAAGTTAACGGGACACACTTATGGACTACATTGGCCTGCCGTGGTCACAGTTGGTGCAAGAGCTTATGGGTTTGATTATGAATGCCCTGGTTTGACGGAAATAACTGCAGGCATTAAGCACACAGTGTTTCTGGCGCCCCAAAGAGTAATACAAAGGGAGCTGGAAACAGAAAGAAGGATGAGGCCCAACCAAGAAATCGGTGAAGCCAAATTTCAGAATGAAGGGAGGGGGGATAGGTGGCTGGAGATGGAGCTGGGTGAGTTTCACTTTCAAGGAGACAAAGACGGGGAGTTGGAAATGATTTGTTGCGAGATTGAGACTGTTATAAGTAAGAGGGGTCTCCTTGTTCAAGGTACTGAGGTCAGACCCGAGAGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

296

Amino Acids

34.07

Weight (kDa)

8.74

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 103 - 292 9e-43 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 833
AccB1I GGYRCC 2 cut(s) 333, 640
AccII CGCG 1 cut(s) 11
AciI CCGC 5 cut(s) 11, 14, 128, 131, 164
AclWI GGATC 1 cut(s) 175
AcsI RAATTY 1 cut(s) 716
AcyI GRCGYC 2 cut(s) 334, 641
AdeI CACNNNGTG 1 cut(s) 631
AfaI GTAC 2 cut(s) 506, 862
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 5 cut(s) 121, 204, 440, 779, 857
AjnI CCWGG 2 cut(s) 395, 592
AluBI AGCT 8 cut(s) 229, 282, 326, 418, 494, 569, 667, 760
AluI AGCT 8 cut(s) 229, 282, 326, 418, 494, 569, 667, 760
Alw26I GTCTC 5 cut(s) 164, 452, 777, 818, 851
AlwI GGATC 1 cut(s) 175
Ama87I CYCGRG 1 cut(s) 875
AoxI GGCC 2 cut(s) 539, 689
ApeKI GCWGC 2 cut(s) 48, 326
ApoI RAATTY 1 cut(s) 716
AspLEI GCGC 2 cut(s) 336, 643
AspS9I GGNCC 1 cut(s) 690
AsuHPI GGTGA 3 cut(s) 365, 719, 776
AvaI CYCGRG 1 cut(s) 875
BaeI ACNNNNGTAYC 2 cut(s) 852, 885
BanI GGYRCC 2 cut(s) 333, 640
BarI GAAGNNNNNNTAC 2 cut(s) 215, 247
BauI CACGAG 1 cut(s) 81
BbvI GCAGC 2 cut(s) 35, 313
BccI CCATC 4 cut(s) 16, 263, 263, 748
BceAI ACGGC 1 cut(s) 530
BciT130I CCWGG 2 cut(s) 397, 594
BcoDI GTCTC 5 cut(s) 164, 452, 777, 818, 851
BfmI CTRYAG 1 cut(s) 612
BfoI RGCGCY 2 cut(s) 337, 644
BisI GCNGC 4 cut(s) 12, 49, 129, 327
BlsI GCNGC 4 cut(s) 13, 50, 130, 328
Bme1390I CCNGG 2 cut(s) 397, 594
BmeT110I CYCGRG 1 cut(s) 875
BmgT120I GGNCC 1 cut(s) 690
BmiI GGNNCC 2 cut(s) 335, 642
BmrFI CCNGG 2 cut(s) 397, 594
BpmI CTGGAG 1 cut(s) 770
BsaHI GRCGYC 2 cut(s) 334, 641
BsaI GGTCTC 2 cut(s) 164, 851
BsaJI CCNNGG 3 cut(s) 445, 546, 592
BseBI CCWGG 2 cut(s) 397, 594
BseDI CCNNGG 3 cut(s) 445, 546, 592
BseGI GGATG 2 cut(s) 255, 690
BseMII CTCAG 2 cut(s) 381, 855
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 2 cut(s) 35, 313
BseYI CCCAGC 1 cut(s) 760
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 2 cut(s) 541, 691
BshNI GGYRCC 2 cut(s) 333, 640
BsiHKCI CYCGRG 1 cut(s) 875
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 3 cut(s) 164, 457, 531
BsmAI GTCTC 5 cut(s) 164, 452, 777, 818, 851
BsmFI GGGAC 3 cut(s) 164, 457, 531
BsmI GAATGC 1 cut(s) 593
BsnI GGCC 2 cut(s) 541, 691
Bso31I GGTCTC 2 cut(s) 164, 851
BsoBI CYCGRG 1 cut(s) 875
Bsp1407I TGTACA 1 cut(s) 504
Bsp143I GATC 2 cut(s) 63, 180
BspACI CCGC 5 cut(s) 11, 14, 128, 131, 164
BspANI GGCC 2 cut(s) 541, 691
BspCNI CTCAG 2 cut(s) 382, 856
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 2 cut(s) 335, 642
BspMAI CTGCAG 1 cut(s) 616
BspPI GGATC 1 cut(s) 175
BspT107I GGYRCC 2 cut(s) 333, 640
BspTNI GGTCTC 2 cut(s) 164, 851
BsrGI TGTACA 1 cut(s) 504
BssECI CCNNGG 3 cut(s) 445, 546, 592
BssMI GATC 2 cut(s) 63, 180
BssNI GRCGYC 2 cut(s) 334, 641
BssSI CACGAG 1 cut(s) 81
Bst2BI CACGAG 1 cut(s) 81
Bst2UI CCWGG 2 cut(s) 397, 594
Bst4CI ACNGT 3 cut(s) 556, 631, 829
BstACI GRCGYC 2 cut(s) 334, 641
BstAPI GCANNNNNTGC 1 cut(s) 37
BstAUI TGTACA 1 cut(s) 504
BstC8I GCNNGC 6 cut(s) 33, 91, 95, 467, 543, 616
BstDEI CTNAG 2 cut(s) 390, 864
BstDSI CCRYGG 2 cut(s) 445, 546
BstF5I GGATG 2 cut(s) 255, 690
BstFNI CGCG 1 cut(s) 11
BstH2I RGCGCY 2 cut(s) 337, 644
BstHHI GCGC 2 cut(s) 336, 643
BstKTI GATC 2 cut(s) 66, 183
BstMAI GTCTC 5 cut(s) 164, 452, 777, 818, 851
BstMBI GATC 2 cut(s) 63, 180
BstMWI GCNNNNNNNGC 2 cut(s) 37, 279
BstNI CCWGG 2 cut(s) 397, 594
BstNSI RCATGY 4 cut(s) 93, 97, 157, 469
BstSCI CCNGG 2 cut(s) 395, 592
BstSFI CTRYAG 1 cut(s) 612
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 35, 313
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BsuRI GGCC 2 cut(s) 541, 691
BtgI CCRYGG 2 cut(s) 445, 546
BtsCI GGATG 2 cut(s) 255, 690
BtsIMutI CAGTG 1 cut(s) 636
Cac8I GCNNGC 6 cut(s) 33, 91, 95, 467, 543, 616
CfoI GCGC 2 cut(s) 336, 643
Cfr13I GGNCC 1 cut(s) 690
Csp6I GTAC 2 cut(s) 505, 861
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviAII CATG 6 cut(s) 90, 94, 154, 167, 466, 477
CviQI GTAC 2 cut(s) 505, 861
DdeI CTNAG 2 cut(s) 390, 864
DinI GGCGCC 2 cut(s) 335, 642
DpnI GATC 2 cut(s) 65, 182
DpnII GATC 2 cut(s) 63, 180
DraIII CACNNNGTG 1 cut(s) 631
EciI GGCGGA 1 cut(s) 146
Eco31I GGTCTC 2 cut(s) 164, 851
Eco88I CYCGRG 1 cut(s) 875
EcoRII CCWGG 2 cut(s) 395, 592
EcoT22I ATGCAT 1 cut(s) 95
EgeI GGCGCC 2 cut(s) 335, 642
EheI GGCGCC 2 cut(s) 335, 642
FaeI CATG 6 cut(s) 93, 97, 157, 170, 469, 480
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FaqI GGGAC 3 cut(s) 164, 457, 531
FatI CATG 6 cut(s) 89, 93, 153, 166, 465, 476
Fnu4HI GCNGC 4 cut(s) 12, 49, 129, 327
FokI GGATG 2 cut(s) 242, 697
Fsp4HI GCNGC 4 cut(s) 12, 49, 129, 327
GlaI GCGC 2 cut(s) 335, 642
GluI GCNGC 4 cut(s) 12, 49, 129, 327
GsaI CCCAGC 1 cut(s) 764
GsuI CTGGAG 1 cut(s) 770
HaeII RGCGCY 2 cut(s) 337, 644
HaeIII GGCC 2 cut(s) 541, 691
HapII CCGG 1 cut(s) 41
HhaI GCGC 2 cut(s) 336, 643
Hin1I GRCGYC 2 cut(s) 334, 641
Hin1II CATG 6 cut(s) 93, 97, 157, 170, 469, 480
Hin6I GCGC 2 cut(s) 334, 641
HinP1I GCGC 2 cut(s) 334, 641
HincII GTYRAC 1 cut(s) 513
HindII GTYRAC 1 cut(s) 513
HindIII AAGCTT 2 cut(s) 416, 492
HinfI GANTC 5 cut(s) 76, 134, 140, 392, 453
HpaI GTTAAC 1 cut(s) 513
HpaII CCGG 1 cut(s) 41
HphI GGTGA 3 cut(s) 365, 719, 776
Hpy166II GTNNAC 2 cut(s) 505, 513
Hpy188I TCNGA 4 cut(s) 139, 342, 723, 872
Hpy188III TCNNGA 2 cut(s) 83, 457
Hpy8I GTNNAC 2 cut(s) 505, 513
Hpy99I CGWCG 2 cut(s) 269, 487
HpyAV CCTTC 6 cut(s) 38, 170, 217, 347, 675, 722
HpyCH4III ACNGT 3 cut(s) 556, 631, 829
HpyCH4IV ACGT 1 cut(s) 485
HpyCH4V TGCA 6 cut(s) 31, 51, 93, 480, 563, 614
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 279
HpyF3I CTNAG 2 cut(s) 390, 864
HpySE526I ACGT 1 cut(s) 485
Hsp92I GRCGYC 2 cut(s) 334, 641
Hsp92II CATG 6 cut(s) 93, 97, 157, 170, 469, 480
HspAI GCGC 2 cut(s) 334, 641
KasI GGCGCC 2 cut(s) 333, 640
KspAI GTTAAC 1 cut(s) 513
Kzo9I GATC 2 cut(s) 63, 180
LmnI GCTCC 3 cut(s) 226, 664, 757
Lsp1109I GCAGC 2 cut(s) 35, 313
MaeII ACGT 1 cut(s) 485
MaeIII GTNAC 1 cut(s) 550
MalI GATC 2 cut(s) 65, 182
MboI GATC 2 cut(s) 63, 180
MboII GAAGA 2 cut(s) 192, 319
MflI RGATCY 1 cut(s) 180
MluCI AATT 1 cut(s) 716
Mly113I GGCGCC 2 cut(s) 334, 641
MlyI GAGTC 3 cut(s) 70, 134, 401
MmeI TCCRAC 2 cut(s) 162, 780
Mph1103I ATGCAT 1 cut(s) 95
MseI TTAA 3 cut(s) 402, 512, 621
MslI CAYNNNNRTG 1 cut(s) 525
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 2 cut(s) 397, 594
Mva1269I GAATGC 1 cut(s) 593
MvaI CCWGG 2 cut(s) 397, 594
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 37, 279
NarI GGCGCC 2 cut(s) 334, 641
NdeII GATC 2 cut(s) 63, 180
NlaIII CATG 6 cut(s) 93, 97, 157, 170, 469, 480
NlaIV GGNNCC 2 cut(s) 335, 642
NmuCI GTSAC 1 cut(s) 550
NsiI ATGCAT 1 cut(s) 95
NspI RCATGY 4 cut(s) 93, 97, 157, 469
PaeI GCATGC 3 cut(s) 93, 97, 469
PciI ACATGT 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PctI GAATGC 1 cut(s) 593
PfeI GAWTC 2 cut(s) 134, 453
PkrI GCNGC 4 cut(s) 13, 50, 130, 328
PleI GAGTC 3 cut(s) 70, 134, 400
PluTI GGCGCC 2 cut(s) 337, 644
PpsI GAGTC 3 cut(s) 70, 134, 400
PscI ACATGT 1 cut(s) 153
PsiI TTATAA 1 cut(s) 833
Psp6I CCWGG 2 cut(s) 395, 592
PspFI CCCAGC 1 cut(s) 760
PspGI CCWGG 2 cut(s) 395, 592
PspN4I GGNNCC 2 cut(s) 335, 642
PspPI GGNCC 1 cut(s) 690
PstI CTGCAG 1 cut(s) 616
PsuI RGATCY 1 cut(s) 180
RsaI GTAC 2 cut(s) 506, 862
RsaNI GTAC 2 cut(s) 505, 861
RseI CAYNNNNRTG 1 cut(s) 525
SaqAI TTAA 3 cut(s) 402, 512, 621
SatI GCNGC 4 cut(s) 12, 49, 129, 327
Sau3AI GATC 2 cut(s) 63, 180
Sau96I GGNCC 1 cut(s) 690
SchI GAGTC 3 cut(s) 70, 134, 401
ScrFI CCNGG 2 cut(s) 397, 594
SfcI CTRYAG 1 cut(s) 612
SfoI GGCGCC 2 cut(s) 335, 642
SmiMI CAYNNNNRTG 1 cut(s) 525
SphI GCATGC 3 cut(s) 93, 97, 469
Sse9I AATT 1 cut(s) 716
SsiI CCGC 5 cut(s) 11, 14, 128, 131, 164
SspDI GGCGCC 2 cut(s) 333, 640
StyD4I CCNGG 2 cut(s) 395, 592
TaaI ACNGT 3 cut(s) 556, 631, 829
TaiI ACGT 1 cut(s) 488
TaqI TCGA 3 cut(s) 110, 264, 456
TasI AATT 1 cut(s) 716
TatI WGTACW 1 cut(s) 504
TauI GCSGC 2 cut(s) 14, 131
TfiI GAWTC 2 cut(s) 134, 453
Tru1I TTAA 3 cut(s) 402, 512, 621
Tru9I TTAA 3 cut(s) 402, 512, 621
TscAI CASTG 1 cut(s) 636
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 2 cut(s) 48, 326
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 2 cut(s) 600, 741
TspGWI ACGGA 3 cut(s) 133, 434, 617
TspRI CASTG 1 cut(s) 636
XapI RAATTY 1 cut(s) 716
XceI RCATGY 4 cut(s) 93, 97, 157, 469
Zsp2I ATGCAT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.