pycom12g23420

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000189
Physical Location & Seq
Forward (+)
24026886 .. 24028251
1366 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g23420.1

Sequence Viewer

Length: 582 bp
ATGGATCTGCAGGCCTTGCCGGAAGGGTGCATAGCCACCGTTGTCTCGCTTACCACGCCTCGAGACGCGGGCACGTTGTCGTCTGTTTCGAGGAGTTTCAGGTCGGCAGCGGAATCCGACACCGTCTGGGACAGGTTCCTTCCACCCGATATCCACACGATCCTGTCCTCCTCGTCACCCGCCATGTCCGTACATCCGCCGTATGTGTCTCCCTCCTCCGCTTCCAAAACCAAGAAGGAGCTTTACCTCGCTCTATGCGACAAACCTGTTCTCATCCAGCAGGGAAAGTTGAGCTTTTCACTGGACAAATGGAGCGGGAAGAAATGCTATATGATTGCTGCAAGGGCCCTTTCGATCGTTTGGGGCGACACTCCTCAATACTGGGAATGGATTTCTCTCCCCGACTCGAGGTTTGAGGAGGTGGCAGAGCTTATGTGTGTGTGTGTTGGCTTGAAATCCGTGGCAAAATTGAGACACGGATGCTGTCCCCGGCCACCCTTTATAAAGCTTATCTTGTATTCAAGCCAACTACAGGGGCTTATGGATTTGAGCAACAACCTGTGGAGGTCTCTGTCGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

194

Amino Acids

21.33

Weight (kDa)

8.47

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 107 - 148 3.8e-16 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 503
AccBSI CCGCTC 1 cut(s) 315
AccII CGCG 1 cut(s) 68
AciI CCGC 6 cut(s) 68, 110, 180, 197, 219, 315
AclWI GGATC 2 cut(s) 12, 154
AcoI YGGCCR 1 cut(s) 491
AfaI GTAC 1 cut(s) 192
AfiI CCNNNNNNNGG 2 cut(s) 408, 532
AgsI TTSAA 2 cut(s) 454, 522
AluBI AGCT 4 cut(s) 241, 294, 430, 508
AluI AGCT 4 cut(s) 241, 294, 430, 508
Alw26I GTCTC 5 cut(s) 49, 57, 213, 466, 573
AlwI GGATC 2 cut(s) 12, 154
Ama87I CYCGRG 2 cut(s) 60, 406
AoxI GGCC 3 cut(s) 12, 345, 491
ApaI GGGCCC 1 cut(s) 349
ApeKI GCWGC 2 cut(s) 107, 338
ArsI GACNNNNNNTTYG 2 cut(s) 395, 427
AspS9I GGNCC 2 cut(s) 345, 346
AsuC2I CCSGG 1 cut(s) 490
AsuHPI GGTGA 1 cut(s) 168
AvaI CYCGRG 2 cut(s) 60, 406
BaeGI GKGCMC 2 cut(s) 74, 349
BanII GRGCYC 1 cut(s) 349
BarI GAAGNNNNNNTAC 2 cut(s) 227, 259
BbvI GCAGC 2 cut(s) 119, 325
BceAI ACGGC 1 cut(s) 184
BcnI CCSGG 1 cut(s) 490
BcoDI GTCTC 5 cut(s) 49, 57, 213, 466, 573
BfmI CTRYAG 2 cut(s) 8, 530
BisI GCNGC 2 cut(s) 108, 339
BlsI GCNGC 2 cut(s) 109, 340
Bme1390I CCNGG 1 cut(s) 490
BmeT110I CYCGRG 2 cut(s) 60, 406
BmgT120I GGNCC 2 cut(s) 345, 346
BmiI GGNNCC 2 cut(s) 137, 347
BmrFI CCNGG 1 cut(s) 490
BmrI ACTGGG 1 cut(s) 391
BmsI GCATC 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 391
BpuMI CCSGG 1 cut(s) 490
BsaI GGTCTC 1 cut(s) 573
BsaJI CCNNGG 2 cut(s) 459, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 408, 532
Bse1I ACTGG 2 cut(s) 306, 386
BseDI CCNNGG 2 cut(s) 459, 488
BseGI GGATG 3 cut(s) 193, 273, 485
BseLI CCNNNNNNNGG 2 cut(s) 408, 532
BseNI ACTGG 2 cut(s) 306, 386
BseRI GAGGAG 5 cut(s) 106, 160, 205, 363, 431
BseSI GKGCMC 2 cut(s) 74, 349
BseXI GCAGC 2 cut(s) 119, 325
Bsh1236I CGCG 1 cut(s) 68
Bsh1285I CGRYCG 1 cut(s) 357
BshFI GGCC 3 cut(s) 14, 347, 493
BsiEI CGRYCG 1 cut(s) 357
BsiHKCI CYCGRG 2 cut(s) 60, 406
BsiSI CCGG 2 cut(s) 20, 490
BslFI GGGAC 2 cut(s) 143, 471
BslI CCNNNNNNNGG 2 cut(s) 408, 532
BsmAI GTCTC 5 cut(s) 49, 57, 213, 466, 573
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 2 cut(s) 143, 471
BsnI GGCC 3 cut(s) 14, 347, 493
Bso31I GGTCTC 1 cut(s) 573
BsoBI CYCGRG 2 cut(s) 60, 406
Bsp120I GGGCCC 1 cut(s) 345
Bsp1286I GDGCHC 2 cut(s) 74, 349
Bsp143I GATC 3 cut(s) 4, 159, 354
BspACI CCGC 6 cut(s) 68, 110, 180, 197, 219, 315
BspANI GGCC 3 cut(s) 14, 347, 493
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 2 cut(s) 137, 347
BspMAI CTGCAG 1 cut(s) 12
BspPI GGATC 2 cut(s) 12, 154
BspTNI GGTCTC 1 cut(s) 573
BsrBI CCGCTC 1 cut(s) 315
BsrI ACTGG 2 cut(s) 306, 386
BssECI CCNNGG 2 cut(s) 459, 488
BssMI GATC 3 cut(s) 4, 159, 354
Bst4CI ACNGT 2 cut(s) 40, 124
BstAPI GCANNNNNTGC 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 12, 70
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 3 cut(s) 193, 273, 485
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 3 cut(s) 7, 162, 357
BstMAI GTCTC 5 cut(s) 49, 57, 213, 466, 573
BstMBI GATC 3 cut(s) 4, 159, 354
BstMCI CGRYCG 1 cut(s) 357
BstMWI GCNNNNNNNGC 3 cut(s) 16, 55, 344
BstSCI CCNGG 1 cut(s) 488
BstSFI CTRYAG 2 cut(s) 8, 530
BstSLI GKGCMC 2 cut(s) 74, 349
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 119, 325
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 3 cut(s) 14, 347, 493
BtgI CCRYGG 1 cut(s) 459
BtsCI GGATG 3 cut(s) 193, 273, 485
BtsIMutI CAGTG 1 cut(s) 299
Cac8I GCNNGC 2 cut(s) 12, 70
Cfr13I GGNCC 2 cut(s) 345, 346
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 191
CviAII CATG 1 cut(s) 184
CviQI GTAC 1 cut(s) 191
DpnI GATC 3 cut(s) 6, 161, 356
DpnII GATC 3 cut(s) 4, 159, 354
EaeI YGGCCR 1 cut(s) 491
EciI GGCGGA 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 14
Eco24I GRGCYC 1 cut(s) 349
Eco31I GGTCTC 1 cut(s) 573
Eco32I GATATC 1 cut(s) 151
Eco88I CYCGRG 2 cut(s) 60, 406
EcoO109I RGGNCCY 2 cut(s) 345, 346
EcoRV GATATC 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 349
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 1 cut(s) 187
FaiI YATR 9 cut(s) 32, 185, 204, 256, 330, 332, 434, 503, 542
FalI AAGNNNNNCTT 4 cut(s) 278, 310, 497, 529
FaqI GGGAC 2 cut(s) 143, 471
FatI CATG 1 cut(s) 183
FauI CCCGC 3 cut(s) 61, 187, 308
Fnu4HI GCNGC 2 cut(s) 108, 339
FokI GGATG 3 cut(s) 180, 260, 492
FriOI GRGCYC 1 cut(s) 349
Fsp4HI GCNGC 2 cut(s) 108, 339
GluI GCNGC 2 cut(s) 108, 339
HaeIII GGCC 3 cut(s) 14, 347, 493
HapII CCGG 2 cut(s) 20, 490
HgaI GACGC 1 cut(s) 74
Hin1II CATG 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 2 cut(s) 113, 404
HpaII CCGG 2 cut(s) 20, 490
HphI GGTGA 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 62
HpyAV CCTTC 3 cut(s) 17, 149, 229
HpyCH4III ACNGT 2 cut(s) 40, 124
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 3 cut(s) 10, 30, 341
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 55, 344
HpySE526I ACGT 1 cut(s) 74
Hsp92II CATG 1 cut(s) 187
Kzo9I GATC 3 cut(s) 4, 159, 354
LmnI GCTCC 2 cut(s) 238, 312
Lsp1109I GCAGC 2 cut(s) 119, 325
LweI GCATC 1 cut(s) 470
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 174
MalI GATC 3 cut(s) 6, 161, 356
MbiI CCGCTC 1 cut(s) 315
MboI GATC 3 cut(s) 4, 159, 354
MboII GAAGA 1 cut(s) 331
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 74, 349
MluCI AATT 1 cut(s) 467
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 1 cut(s) 141
MseI TTAA 1 cut(s) 580
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 2 cut(s) 20, 490
MspR9I CCNGG 1 cut(s) 490
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 3 cut(s) 16, 55, 344
NciI CCSGG 1 cut(s) 490
NdeII GATC 3 cut(s) 4, 159, 354
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 2 cut(s) 137, 347
NmuCI GTSAC 1 cut(s) 174
PaeR7I CTCGAG 2 cut(s) 60, 406
PceI AGGCCT 1 cut(s) 14
PcsI WCGNNNNNNNCGW 3 cut(s) 86, 255, 363
PfeI GAWTC 1 cut(s) 113
PflFI GACNNNGTC 1 cut(s) 122
PkrI GCNGC 2 cut(s) 109, 340
Ple19I CGATCG 1 cut(s) 357
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
PsiI TTATAA 1 cut(s) 503
PspN4I GGNNCC 2 cut(s) 137, 347
PspOMI GGGCCC 1 cut(s) 345
PspPI GGNCC 2 cut(s) 345, 346
PspXI VCTCGAGB 1 cut(s) 406
PstI CTGCAG 1 cut(s) 12
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 122
PvuI CGATCG 1 cut(s) 357
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 580
SatI GCNGC 2 cut(s) 108, 339
Sau3AI GATC 3 cut(s) 4, 159, 354
Sau96I GGNCC 2 cut(s) 345, 346
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 1 cut(s) 490
SduI GDGCHC 2 cut(s) 74, 349
SfaNI GCATC 1 cut(s) 470
SfcI CTRYAG 2 cut(s) 8, 530
Sfr274I CTCGAG 2 cut(s) 60, 406
SlaI CTCGAG 2 cut(s) 60, 406
SmlI CTYRAG 2 cut(s) 60, 406
SmoI CTYRAG 2 cut(s) 60, 406
Sse9I AATT 1 cut(s) 467
SseBI AGGCCT 1 cut(s) 14
SsiI CCGC 6 cut(s) 68, 110, 180, 197, 219, 315
StuI AGGCCT 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 488
TaaI ACNGT 2 cut(s) 40, 124
TaiI ACGT 1 cut(s) 77
TaqI TCGA 4 cut(s) 61, 89, 353, 407
TasI AATT 1 cut(s) 467
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 580
Tru9I TTAA 1 cut(s) 580
TscAI CASTG 1 cut(s) 306
TseFI GTSAC 1 cut(s) 174
TseI GCWGC 2 cut(s) 107, 338
Tsp45I GTSAC 1 cut(s) 174
TspGWI ACGGA 3 cut(s) 178, 448, 492
TspRI CASTG 1 cut(s) 306
Tth111I GACNNNGTC 1 cut(s) 122
XhoI CTCGAG 2 cut(s) 60, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.