FvH4_6g01110

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000189
Physical Location & Seq
Reverse (-)
611138 .. 612712
1575 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01110.t1

Sequence Viewer

Length: 762 bp
ATGATGGATCTGCTGGAGTTGCCGGAGGGTTGCATAGCCCATATCATATCGTTGACGACTCCTCGAGATGCTTGCCGGCTGTCTTTGCTTTCTAAGCTTTTCGGGTCAGCTGCCGATTCCGACGCCGTTTGGGATAAGTTCCTTCCGCCTGAGACACGCACCTTGTCCCCAGAGGAGCTTGGGGTACTTGCCGGCAGAACCAAAAAGGAGGTTTTCCTCGCTCTCTGCCCTGTCCTCTTCAGGGAGGGTAAACTGAGCTTTTCACTAGACAAATGGAGTGGGAAAAAATGTTACATGATTTCTGCAAGAGAGCTTGGTATTGCCTGGGGCAACACTCCGATGTATTGGAGATGGATTTCTGATCCTGAATCCAGGTTTGCAGAGGTGGCTGAGCTTCTTGATGTTTGCTGGCTTGAAATCCATGGGAAACTTGAGACACGTCTGCTGTCCCCATCCACTATGTACAAAGGTTACCTTGTGTTCAAGTTTACTGCACAACCTTCTGGATTTGTAGACCTAGAGGCGGAGGTCACTATGGGTCTTGACTCTCTTGAGGGAGGAGAAATTATTAACCGGACTGAGTTTCTGCACAGTGGAGTGAGATCCGACGGGTGGTTGGAGATTGAGATGGGTGAGTTTTACTGTGTAGGGGGATCAGAAGATGGGATGTTGAAAATGCGTTGTTTGGCAAATGGGGCGGGTCATTGGAAGAGAGGTCTTATTGTTCAAGGCATTGAGGTCCGCCCCAAGAGGGAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

254

Amino Acids

28.42

Weight (kDa)

5.29

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 95 - 249 2.1e-49 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 513
AciI CCGC 4 cut(s) 146, 524, 698, 742
AclWI GGATC 4 cut(s) 15, 356, 597, 661
AcuI CTGAAG 1 cut(s) 223
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 3 cut(s) 186, 464, 758
AfiI CCNNNNNNNGG 4 cut(s) 241, 523, 612, 751
AflIII ACRYGT 1 cut(s) 437
AgsI TTSAA 4 cut(s) 416, 484, 673, 728
AjiI CACGTC 1 cut(s) 440
AjnI CCWGG 2 cut(s) 323, 371
AluBI AGCT 6 cut(s) 97, 110, 178, 258, 313, 394
AluI AGCT 6 cut(s) 97, 110, 178, 258, 313, 394
Alw26I GTCTC 2 cut(s) 146, 428
AlwI GGATC 4 cut(s) 15, 356, 597, 661
Ama87I CYCGRG 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 739
AsuHPI GGTGA 1 cut(s) 644
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 1 cut(s) 739
BbvI GCAGC 1 cut(s) 97
BccI CCATC 4 cut(s) 345, 460, 622, 656
BceAI ACGGC 1 cut(s) 110
BcgI CGANNNNNNTGC 2 cut(s) 54, 88
BciT130I CCWGG 2 cut(s) 325, 373
BcoDI GTCTC 2 cut(s) 146, 428
BfaI CTAG 3 cut(s) 266, 518, 760
BisI GCNGC 1 cut(s) 111
BlpI GCTNAGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 112
BmcAI AGTACT 1 cut(s) 758
Bme1390I CCNGG 2 cut(s) 325, 373
Bme18I GGWCC 1 cut(s) 739
BmeT110I CYCGRG 1 cut(s) 63
BmgBI CACGTC 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 739
BmrFI CCNGG 2 cut(s) 325, 373
BmsI GCATC 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 35
Bpu1102I GCTNAGC 1 cut(s) 390
BpuEI CTTGAG 2 cut(s) 452, 572
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 324, 421
BsaWI WCCGGW 1 cut(s) 573
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 523, 612, 751
Bse118I RCCGGY 2 cut(s) 75, 191
BseBI CCWGG 2 cut(s) 325, 373
BseDI CCNNGG 2 cut(s) 324, 421
BseGI GGATG 2 cut(s) 452, 672
BseLI CCNNNNNNNGG 4 cut(s) 241, 523, 612, 751
BseMII CTCAG 4 cut(s) 141, 245, 381, 570
BseRI GAGGAG 3 cut(s) 51, 188, 573
BseXI GCAGC 1 cut(s) 97
BsgI GTGCAG 2 cut(s) 477, 572
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 4 cut(s) 23, 76, 192, 574
BslFI GGGAC 2 cut(s) 151, 433
BslI CCNNNNNNNGG 4 cut(s) 241, 523, 612, 751
BsmAI GTCTC 2 cut(s) 146, 428
BsmFI GGGAC 2 cut(s) 151, 433
BsoBI CYCGRG 1 cut(s) 63
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 4 cut(s) 7, 361, 602, 653
Bsp1720I GCTNAGC 1 cut(s) 390
Bsp19I CCATGG 1 cut(s) 421
BspACI CCGC 4 cut(s) 146, 524, 698, 742
BspCNI CTCAG 4 cut(s) 142, 246, 382, 571
BspPI GGATC 4 cut(s) 15, 356, 597, 661
BsrFI RCCGGY 2 cut(s) 75, 191
BsrGI TGTACA 1 cut(s) 462
BssAI RCCGGY 2 cut(s) 75, 191
BssECI CCNNGG 2 cut(s) 324, 421
BssMI GATC 4 cut(s) 7, 361, 602, 653
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 421
Bst2UI CCWGG 2 cut(s) 325, 373
Bst4CI ACNGT 2 cut(s) 593, 644
Bst6I CTCTTC 2 cut(s) 242, 704
BstACI GRCGYC 1 cut(s) 123
BstAUI TGTACA 1 cut(s) 462
BstC8I GCNNGC 4 cut(s) 73, 77, 193, 410
BstDEI CTNAG 5 cut(s) 93, 150, 254, 390, 579
BstDSI CCRYGG 1 cut(s) 421
BstEII GGTNACC 1 cut(s) 470
BstF5I GGATG 2 cut(s) 452, 672
BstKTI GATC 4 cut(s) 10, 364, 605, 656
BstMAI GTCTC 2 cut(s) 146, 428
BstMBI GATC 4 cut(s) 7, 361, 602, 653
BstMWI GCNNNNNNNGC 5 cut(s) 19, 85, 94, 386, 695
BstNI CCWGG 2 cut(s) 325, 373
BstPI GGTNACC 1 cut(s) 470
BstSCI CCNGG 2 cut(s) 323, 371
BstV1I GCAGC 1 cut(s) 97
BstX2I RGATCY 2 cut(s) 7, 602
BstYI RGATCY 2 cut(s) 7, 602
BtgI CCRYGG 1 cut(s) 421
BtrI CACGTC 1 cut(s) 440
BtsCI GGATG 2 cut(s) 452, 672
BtsIMutI CAGTG 1 cut(s) 598
Cac8I GCNNGC 4 cut(s) 73, 77, 193, 410
Cfr10I RCCGGY 2 cut(s) 75, 191
Cfr13I GGNCC 1 cut(s) 739
CseI GACGC 1 cut(s) 131
Csp6I GTAC 3 cut(s) 185, 463, 757
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviAII CATG 2 cut(s) 295, 422
CviQI GTAC 3 cut(s) 185, 463, 757
DdeI CTNAG 5 cut(s) 93, 150, 254, 390, 579
DpnI GATC 4 cut(s) 9, 363, 604, 655
DpnII GATC 4 cut(s) 7, 361, 602, 653
Eam1104I CTCTTC 2 cut(s) 242, 704
EarI CTCTTC 2 cut(s) 242, 704
EciI GGCGGA 3 cut(s) 135, 539, 731
Eco130I CCWWGG 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 739
Eco57I CTGAAG 1 cut(s) 223
Eco88I CYCGRG 1 cut(s) 63
Eco91I GGTNACC 1 cut(s) 470
EcoO65I GGTNACC 1 cut(s) 470
EcoRII CCWGG 2 cut(s) 323, 371
EcoT14I CCWWGG 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 421
FaeI CATG 2 cut(s) 298, 425
FaiI YATR 7 cut(s) 35, 42, 47, 296, 423, 461, 536
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FaqI GGGAC 2 cut(s) 151, 433
FatI CATG 2 cut(s) 294, 421
FauI CCCGC 1 cut(s) 691
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 2 cut(s) 439, 679
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 3 cut(s) 266, 518, 760
GluI GCNGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 35
HapII CCGG 4 cut(s) 23, 76, 192, 574
HgaI GACGC 1 cut(s) 131
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 2 cut(s) 298, 425
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 4 cut(s) 58, 116, 368, 545
HpaII CCGG 4 cut(s) 23, 76, 192, 574
HphI GGTGA 1 cut(s) 644
Hpy166II GTNNAC 4 cut(s) 54, 251, 489, 514
Hpy188I TCNGA 5 cut(s) 121, 339, 361, 607, 658
Hpy188III TCNNGA 6 cut(s) 65, 365, 398, 504, 542, 551
Hpy8I GTNNAC 4 cut(s) 54, 251, 489, 514
Hpy99I CGWCG 2 cut(s) 125, 611
HpyAV CCTTC 2 cut(s) 152, 510
HpyCH4III ACNGT 2 cut(s) 593, 644
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 5 cut(s) 33, 305, 380, 494, 589
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 85, 94, 386, 695
HpyF3I CTNAG 5 cut(s) 93, 150, 254, 390, 579
HpySE526I ACGT 1 cut(s) 439
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 2 cut(s) 298, 425
KroI GCCGGC 2 cut(s) 75, 191
KroNI GCCGGC 2 cut(s) 77, 193
Kzo9I GATC 4 cut(s) 7, 361, 602, 653
LmnI GCTCC 1 cut(s) 175
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 58
MaeI CTAG 3 cut(s) 266, 518, 760
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 3 cut(s) 290, 470, 529
MalI GATC 4 cut(s) 9, 363, 604, 655
MboI GATC 4 cut(s) 7, 361, 602, 653
MboII GAAGA 3 cut(s) 229, 671, 721
MflI RGATCY 2 cut(s) 7, 602
MluCI AATT 1 cut(s) 564
MlyI GAGTC 2 cut(s) 52, 539
MmeI TCCRAC 3 cut(s) 144, 597, 630
MroNI GCCGGC 2 cut(s) 75, 191
MseI TTAA 1 cut(s) 570
MslI CAYNNNNRTG 1 cut(s) 338
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 4 cut(s) 23, 76, 192, 574
MspR9I CCNGG 2 cut(s) 325, 373
MvaI CCWGG 2 cut(s) 325, 373
MwoI GCNNNNNNNGC 5 cut(s) 19, 85, 94, 386, 695
NaeI GCCGGC 2 cut(s) 77, 193
NcoI CCATGG 1 cut(s) 421
NdeII GATC 4 cut(s) 7, 361, 602, 653
NgoMIV GCCGGC 2 cut(s) 75, 191
NlaIII CATG 2 cut(s) 298, 425
NmuCI GTSAC 1 cut(s) 529
PaeR7I CTCGAG 1 cut(s) 63
PdiI GCCGGC 2 cut(s) 77, 193
PfeI GAWTC 2 cut(s) 116, 368
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 2 cut(s) 52, 539
PpsI GAGTC 2 cut(s) 52, 539
Psp6I CCWGG 2 cut(s) 323, 371
PspEI GGTNACC 1 cut(s) 470
PspGI CCWGG 2 cut(s) 323, 371
PspPI GGNCC 1 cut(s) 739
PsuI RGATCY 2 cut(s) 7, 602
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 3 cut(s) 186, 464, 758
RsaNI GTAC 3 cut(s) 185, 463, 757
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 4 cut(s) 7, 361, 602, 653
Sau96I GGNCC 1 cut(s) 739
ScaI AGTACT 1 cut(s) 758
SchI GAGTC 2 cut(s) 52, 539
ScrFI CCNGG 2 cut(s) 325, 373
SfaNI GCATC 1 cut(s) 58
Sfr274I CTCGAG 1 cut(s) 63
SinI GGWCC 1 cut(s) 739
SlaI CTCGAG 1 cut(s) 63
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 3 cut(s) 63, 431, 551
SmoI CTYRAG 3 cut(s) 63, 431, 551
Sse9I AATT 1 cut(s) 564
SsiI CCGC 4 cut(s) 146, 524, 698, 742
SspMI CTAG 3 cut(s) 266, 518, 760
StyD4I CCNGG 2 cut(s) 323, 371
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 2 cut(s) 593, 644
TaiI ACGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 64
TasI AATT 1 cut(s) 564
TatI WGTACW 2 cut(s) 462, 756
TfiI GAWTC 2 cut(s) 116, 368
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TscAI CASTG 1 cut(s) 598
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 529
TspRI CASTG 1 cut(s) 598
VpaK11BI GGWCC 1 cut(s) 739
XhoI CTCGAG 1 cut(s) 63
XmiI GTMKAC 1 cut(s) 513
XspI CTAG 3 cut(s) 266, 518, 760
ZrmI AGTACT 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.