Rw2G014220

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000189
Physical Location & Seq
Forward (+)
15793284 .. 15794372
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G014220.1

Sequence Viewer

Length: 885 bp
ATGATCACCTGCTGCAAGACAGTGTTGGATCTGCAGGCTTTACCCGAAGGATGCATAGCGAAAATCATCTCATTCACGACTCCTAGAGATGCCTGCAGGCTGTCCTCGCTTTCCAGGATTTTCATGTCGGCCGCGGAATCCGACACCATTTGGTTCAAGTTCATTCCGCCTGAGATCCATTCACTACTATCTCCGCTCTATTGCCTTTCCAAATCCAAGAAGGAGCTTTACCTTGCACTATGTGATTCCCCAGCACTCATTGACGAGGGCAAGATGAGTTTGTCACTGGACAAGTGGAGTGGGAAGAAATGTTACATGATATCTGCAAGGAGCCTTCAGATTATTTGGTCTGATACTCCTCAATATTGGAGATGGATTTCTCTCCCTGACACCAGGTTTGAGGAGGTGGCTGAGCTTCTTGGTGTTTGGTGGCTTGAAATCAGTGGAAAAATTGATAGGCGCATGATGTCTCCGTCGACTCTGTATAAATCTTATCTTGTCTACAGGTTAACTGCAATATCTTACGGATTTGAGTGCCAATCTGTGGAGGTCACAGTTGGAGGAGAAGCTAATAAGCGGATTGTGTTTCTGGAAGATGCGGGGCGGATAAAGAAGAGATCGGTATACTGGACTCACTTTTTGGATTTGCATGCCGCACTGGTACAGGCACAGTCATCGTCCCAGCCCAGAGAAATCGAATTAGCTCGTCAATATCCAAAGGAAAGAGCTGACGGCTGGTTGGAGATCGAACTGGGTGAATTTTTCTGTGAAGGAGGTGAAGAAGAAGATGGGGAATTGGAGATGACTTGTTCCGAGATCAATGGTGCTTTCACCAAGGGTGGCCTCATTGTTCAAGGGATTGAGGTCAGACCCAACAGGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

294

Amino Acids

33.46

Weight (kDa)

5.36

Isoelectric Point (pI)

56.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 102 - 291 2.1e-53 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 17
Acc36I ACCTGC 1 cut(s) 17
AccB7I CCANNNNNTGG 1 cut(s) 544
AccBSI CCGCTC 1 cut(s) 196
AccI GTMKAC 3 cut(s) 476, 501, 624
AccII CGCG 1 cut(s) 134
AciI CCGC 8 cut(s) 132, 134, 167, 194, 577, 599, 604, 654
AclWI GGATC 2 cut(s) 36, 169
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 1 cut(s) 758
AcuI CTGAAG 1 cut(s) 320
AdeI CACNNNGTG 1 cut(s) 242
AfaI GTAC 1 cut(s) 663
AfiI CCNNNNNNNGG 1 cut(s) 544
AgsI TTSAA 3 cut(s) 157, 437, 854
AjnI CCWGG 2 cut(s) 113, 392
AluBI AGCT 5 cut(s) 226, 415, 569, 704, 728
AluI AGCT 5 cut(s) 226, 415, 569, 704, 728
Alw26I GTCTC 1 cut(s) 474
AlwI GGATC 2 cut(s) 36, 169
AoxI GGCC 2 cut(s) 129, 841
ApeKI GCWGC 1 cut(s) 12
ApoI RAATTY 1 cut(s) 758
ArsI GACNNNNNNTTYG 4 cut(s) 380, 412, 622, 654
AspLEI GCGC 1 cut(s) 462
AsuHPI GGTGA 3 cut(s) 767, 788, 823
BarI GAAGNNNNNNTAC 4 cut(s) 212, 244, 296, 328
BccI CCATC 2 cut(s) 366, 782
BceAI ACGGC 1 cut(s) 748
BcgI CGANNNNNNTGC 2 cut(s) 657, 691
BciT130I CCWGG 2 cut(s) 115, 394
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 3 cut(s) 32, 94, 502
BfuAI ACCTGC 1 cut(s) 17
BisI GCNGC 3 cut(s) 13, 132, 654
BlpI GCTNAGC 1 cut(s) 411
BlsI GCNGC 3 cut(s) 14, 133, 655
Bme1390I CCNGG 2 cut(s) 115, 394
BmiI GGNNCC 1 cut(s) 332
BmrFI CCNGG 2 cut(s) 115, 394
BmrI ACTGGG 1 cut(s) 761
BmsI GCATC 3 cut(s) 41, 79, 586
BmuI ACTGGG 1 cut(s) 761
Bpu1102I GCTNAGC 1 cut(s) 411
BsaJI CCNNGG 2 cut(s) 132, 834
Bsc4I CCNNNNNNNGG 1 cut(s) 544
Bse1I ACTGG 4 cut(s) 291, 632, 663, 756
BseBI CCWGG 2 cut(s) 115, 394
BseDI CCNNGG 2 cut(s) 132, 834
BseGI GGATG 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 544
BseMII CTCAG 2 cut(s) 162, 402
BseNI ACTGG 4 cut(s) 291, 632, 663, 756
BseRI GAGGAG 3 cut(s) 348, 416, 576
BseX3I CGGCCG 1 cut(s) 129
BseYI CCCAGC 2 cut(s) 250, 681
Bsh1236I CGCG 1 cut(s) 134
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 2 cut(s) 131, 843
BsiEI CGRYCG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 664
BslI CCNNNNNNNGG 1 cut(s) 544
BsmAI GTCTC 1 cut(s) 474
BsmFI GGGAC 1 cut(s) 664
BsnI GGCC 2 cut(s) 131, 843
Bsp143I GATC 6 cut(s) 3, 28, 174, 617, 744, 816
Bsp1720I GCTNAGC 1 cut(s) 411
BspACI CCGC 8 cut(s) 132, 134, 167, 194, 577, 599, 604, 654
BspANI GGCC 2 cut(s) 131, 843
BspCNI CTCAG 2 cut(s) 163, 403
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 332
BspMAI CTGCAG 2 cut(s) 36, 98
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 2 cut(s) 36, 169
BsrBI CCGCTC 1 cut(s) 196
BsrI ACTGG 4 cut(s) 291, 632, 663, 756
BssECI CCNNGG 2 cut(s) 132, 834
BssMI GATC 6 cut(s) 3, 28, 174, 617, 744, 816
BssNAI GTATAC 1 cut(s) 625
BssT1I CCWWGG 1 cut(s) 834
Bst1107I GTATAC 1 cut(s) 625
Bst2UI CCWGG 2 cut(s) 115, 394
Bst4CI ACNGT 3 cut(s) 22, 556, 672
Bst6I CTCTTC 1 cut(s) 608
BstC8I GCNNGC 4 cut(s) 36, 94, 98, 651
BstDEI CTNAG 2 cut(s) 171, 411
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 56
BstFNI CGCG 1 cut(s) 134
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 6 cut(s) 6, 31, 177, 620, 747, 819
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 6 cut(s) 3, 28, 174, 617, 744, 816
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNI CCWGG 2 cut(s) 115, 394
BstNSI RCATGY 1 cut(s) 653
BstSCI CCNGG 2 cut(s) 113, 392
BstSFI CTRYAG 3 cut(s) 32, 94, 502
BstUI CGCG 1 cut(s) 134
BstX2I RGATCY 2 cut(s) 28, 174
BstYI RGATCY 2 cut(s) 28, 174
BstZ17I GTATAC 1 cut(s) 625
BstZI CGGCCG 1 cut(s) 129
BsuRI GGCC 2 cut(s) 131, 843
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 1 cut(s) 56
BtsIMutI CAGTG 4 cut(s) 27, 284, 448, 656
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 4 cut(s) 36, 94, 98, 651
CfoI GCGC 1 cut(s) 462
Cfr42I CCGCGG 1 cut(s) 135
CsiI ACCWGGT 1 cut(s) 392
Csp6I GTAC 1 cut(s) 662
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviAII CATG 4 cut(s) 124, 316, 463, 650
CviQI GTAC 1 cut(s) 662
DdeI CTNAG 2 cut(s) 171, 411
DpnI GATC 6 cut(s) 5, 30, 176, 619, 746, 818
DpnII GATC 6 cut(s) 3, 28, 174, 617, 744, 816
DraIII CACNNNGTG 1 cut(s) 242
EaeI YGGCCR 1 cut(s) 129
EagI CGGCCG 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 608
EarI CTCTTC 1 cut(s) 608
EciI GGCGGA 2 cut(s) 156, 619
EclXI CGGCCG 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 834
Eco32I GATATC 1 cut(s) 321
Eco52I CGGCCG 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 320
EcoRII CCWGG 2 cut(s) 113, 392
EcoRV GATATC 1 cut(s) 321
EcoT14I CCWWGG 1 cut(s) 834
EcoT22I ATGCAT 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 834
FaeI CATG 4 cut(s) 127, 319, 466, 653
FaiI YATR 9 cut(s) 56, 125, 241, 317, 464, 486, 625, 651, 883
FaqI GGGAC 1 cut(s) 664
FatI CATG 4 cut(s) 123, 315, 462, 649
FauI CCCGC 1 cut(s) 592
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 3 cut(s) 476, 501, 624
Fnu4HI GCNGC 3 cut(s) 13, 132, 654
FokI GGATG 1 cut(s) 63
Fsp4HI GCNGC 3 cut(s) 13, 132, 654
FspBI CTAG 1 cut(s) 84
GlaI GCGC 1 cut(s) 461
GluI GCNGC 3 cut(s) 13, 132, 654
GsaI CCCAGC 2 cut(s) 254, 685
HaeIII GGCC 2 cut(s) 131, 843
HhaI GCGC 1 cut(s) 462
Hin1II CATG 4 cut(s) 127, 319, 466, 653
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HincII GTYRAC 2 cut(s) 477, 510
HindII GTYRAC 2 cut(s) 477, 510
HinfI GANTC 5 cut(s) 79, 137, 245, 478, 631
HpaI GTTAAC 1 cut(s) 510
HphI GGTGA 3 cut(s) 767, 788, 823
Hpy166II GTNNAC 4 cut(s) 477, 502, 510, 625
Hpy188I TCNGA 5 cut(s) 142, 339, 352, 814, 869
Hpy188III TCNNGA 2 cut(s) 76, 590
Hpy8I GTNNAC 4 cut(s) 477, 502, 510, 625
Hpy99I CGWCG 1 cut(s) 478
HpyAV CCTTC 4 cut(s) 41, 214, 344, 764
HpyCH4III ACNGT 3 cut(s) 22, 556, 672
HpyCH4V TGCA 8 cut(s) 15, 34, 54, 96, 236, 326, 515, 649
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 2 cut(s) 171, 411
Hsp92II CATG 4 cut(s) 127, 319, 466, 653
HspAI GCGC 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 3
KspAI GTTAAC 1 cut(s) 510
KspI CCGCGG 1 cut(s) 135
Kzo9I GATC 6 cut(s) 3, 28, 174, 617, 744, 816
LmnI GCTCC 2 cut(s) 223, 330
LweI GCATC 3 cut(s) 41, 79, 586
MabI ACCWGGT 1 cut(s) 392
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 3 cut(s) 282, 311, 550
MalI GATC 6 cut(s) 5, 30, 176, 619, 746, 818
MbiI CCGCTC 1 cut(s) 196
MboI GATC 6 cut(s) 3, 28, 174, 617, 744, 816
MboII GAAGA 6 cut(s) 316, 605, 625, 791, 794, 797
MflI RGATCY 2 cut(s) 28, 174
MluCI AATT 4 cut(s) 450, 698, 758, 794
MlyI GAGTC 3 cut(s) 73, 472, 625
MmeI TCCRAC 4 cut(s) 6, 165, 538, 720
Mph1103I ATGCAT 1 cut(s) 56
MseI TTAA 1 cut(s) 509
MspA1I CMGCKG 1 cut(s) 134
MspR9I CCNGG 2 cut(s) 115, 394
MvaI CCWGG 2 cut(s) 115, 394
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeII GATC 6 cut(s) 3, 28, 174, 617, 744, 816
NlaIII CATG 4 cut(s) 127, 319, 466, 653
NlaIV GGNNCC 1 cut(s) 332
NmuCI GTSAC 2 cut(s) 282, 550
NsiI ATGCAT 1 cut(s) 56
NspI RCATGY 1 cut(s) 653
PaeI GCATGC 1 cut(s) 653
PaqCI CACCTGC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 137, 245
PflMI CCANNNNNTGG 1 cut(s) 544
PfoI TCCNGGA 1 cut(s) 113
PkrI GCNGC 3 cut(s) 14, 133, 655
PleI GAGTC 3 cut(s) 73, 472, 625
PpsI GAGTC 3 cut(s) 73, 472, 625
Psp6I CCWGG 2 cut(s) 113, 392
PspFI CCCAGC 2 cut(s) 250, 681
PspGI CCWGG 2 cut(s) 113, 392
PspN4I GGNNCC 1 cut(s) 332
PstI CTGCAG 2 cut(s) 36, 98
PsuI RGATCY 2 cut(s) 28, 174
RsaI GTAC 1 cut(s) 663
RsaNI GTAC 1 cut(s) 662
SacII CCGCGG 1 cut(s) 135
SalI GTCGAC 1 cut(s) 475
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 3 cut(s) 13, 132, 654
Sau3AI GATC 6 cut(s) 3, 28, 174, 617, 744, 816
SbfI CCTGCAGG 1 cut(s) 98
SchI GAGTC 3 cut(s) 73, 472, 625
ScrFI CCNGG 2 cut(s) 115, 394
SdaI CCTGCAGG 1 cut(s) 98
SexAI ACCWGGT 1 cut(s) 392
SfaNI GCATC 3 cut(s) 41, 79, 586
SfcI CTRYAG 3 cut(s) 32, 94, 502
Sfr303I CCGCGG 1 cut(s) 135
SgrBI CCGCGG 1 cut(s) 135
SphI GCATGC 1 cut(s) 653
Sse8387I CCTGCAGG 1 cut(s) 98
Sse9I AATT 4 cut(s) 450, 698, 758, 794
SsiI CCGC 8 cut(s) 132, 134, 167, 194, 577, 599, 604, 654
SspI AATATT 1 cut(s) 365
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 113, 392
StyI CCWWGG 1 cut(s) 834
TaaI ACNGT 3 cut(s) 22, 556, 672
TaqI TCGA 3 cut(s) 476, 696, 747
TasI AATT 4 cut(s) 450, 698, 758, 794
TauI GCSGC 2 cut(s) 134, 656
TfiI GAWTC 2 cut(s) 137, 245
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TscAI CASTG 4 cut(s) 27, 291, 448, 663
TseFI GTSAC 2 cut(s) 282, 550
TseI GCWGC 1 cut(s) 12
Tsp45I GTSAC 2 cut(s) 282, 550
TspDTI ATGAA 2 cut(s) 112, 151
TspGWI ACGGA 2 cut(s) 462, 540
TspRI CASTG 4 cut(s) 27, 291, 448, 663
Van91I CCANNNNNTGG 1 cut(s) 544
XapI RAATTY 1 cut(s) 758
XceI RCATGY 1 cut(s) 653
XmiI GTMKAC 3 cut(s) 476, 501, 624
XspI CTAG 1 cut(s) 84
Zsp2I ATGCAT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.