RchiOBHm_Chr3g0448511

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000189
Physical Location & Seq
Forward (+)
717993 .. 718428
436 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41594

Sequence Viewer

Length: 279 bp
ATGATGCAGCATCTAGACTTGCAAGCGTTGCCGGAAGGATGCATTGCCAATGTGATCTCATTGACCAGTCCTCCAGATGCGTGCAGGCTATCGGTGCTTTCTTGGGTTATCAGATTGGCAGCAGAATCCGACGCCGTTTGGGACAAGTTCCTGCCCCCTGAGACCCATGAGATCCTATCCCACTCTGCCACTGCCTCCGCTGCCAAATCCAAGAAAGAGCTCTACATGTCTCTCAGCCACAGCCCCGTCCTCATCGACGATGGCACTATGGTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

92

Amino Acids

10.0

Weight (kDa)

5.09

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 198
AclWI GGATC 1 cut(s) 166
AcyI GRCGYC 1 cut(s) 132
AflIII ACRYGT 1 cut(s) 225
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 2 cut(s) 155, 234
AlwI GGATC 1 cut(s) 166
ApeKI GCWGC 3 cut(s) 7, 119, 200
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 3 cut(s) 19, 131, 187
BccI CCATC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 119
BcoDI GTCTC 2 cut(s) 155, 234
BfaI CTAG 1 cut(s) 14
BisI GCNGC 3 cut(s) 8, 120, 201
BlsI GCNGC 3 cut(s) 9, 121, 202
BmsI GCATC 3 cut(s) 19, 29, 67
BpmI CTGGAG 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bse1I ACTGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 42
BseGI GGATG 1 cut(s) 44
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 2 cut(s) 150, 247
BseNI ACTGG 1 cut(s) 66
BseXI GCAGC 3 cut(s) 19, 131, 187
BsgI GTGCAG 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 155
BsmAI GTCTC 2 cut(s) 155, 234
BsmFI GGGAC 1 cut(s) 155
Bso31I GGTCTC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 54, 171
BspACI CCGC 1 cut(s) 198
BspCNI CTCAG 2 cut(s) 151, 246
BspPI GGATC 1 cut(s) 166
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 1 cut(s) 66
BssMI GATC 2 cut(s) 54, 171
BssNI GRCGYC 1 cut(s) 132
BstACI GRCGYC 1 cut(s) 132
BstAPI GCANNNNNTGC 1 cut(s) 28
BstC8I GCNNGC 3 cut(s) 24, 82, 86
BstDEI CTNAG 2 cut(s) 159, 233
BstF5I GGATG 1 cut(s) 44
BstKTI GATC 2 cut(s) 57, 174
BstMAI GTCTC 2 cut(s) 155, 234
BstMBI GATC 2 cut(s) 54, 171
BstMWI GCNNNNNNNGC 3 cut(s) 28, 94, 200
BstNSI RCATGY 1 cut(s) 229
BstV1I GCAGC 3 cut(s) 19, 131, 187
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BtsCI GGATG 1 cut(s) 44
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 3 cut(s) 24, 82, 86
CseI GACGC 1 cut(s) 140
CviAII CATG 2 cut(s) 167, 226
CviJI RGCY 4 cut(s) 88, 220, 237, 243
CviKI_1 RGCY 4 cut(s) 88, 220, 237, 243
DdeI CTNAG 2 cut(s) 159, 233
DpnI GATC 2 cut(s) 56, 173
DpnII GATC 2 cut(s) 54, 171
Ecl136II GAGCTC 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 220
EcoT22I ATGCAT 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 222
FaeI CATG 2 cut(s) 170, 229
FaiI YATR 3 cut(s) 168, 227, 269
FaqI GGGAC 1 cut(s) 155
FatI CATG 2 cut(s) 166, 225
Fnu4HI GCNGC 3 cut(s) 8, 120, 201
FokI GGATG 1 cut(s) 51
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 3 cut(s) 8, 120, 201
FspBI CTAG 1 cut(s) 14
GluI GCNGC 3 cut(s) 8, 120, 201
GsuI CTGGAG 1 cut(s) 57
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 140
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 2 cut(s) 170, 229
HinfI GANTC 1 cut(s) 125
HpaII CCGG 1 cut(s) 32
Hpy188I TCNGA 2 cut(s) 113, 130
Hpy188III TCNNGA 2 cut(s) 14, 74
Hpy99I CGWCG 2 cut(s) 134, 260
HpyAV CCTTC 1 cut(s) 29
HpyCH4V TGCA 4 cut(s) 7, 22, 42, 84
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 94, 200
HpyF3I CTNAG 2 cut(s) 159, 233
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 2 cut(s) 170, 229
Kzo9I GATC 2 cut(s) 54, 171
LpnPI CCDG 6 cut(s) 45, 70, 79, 87, 164, 171
Lsp1109I GCAGC 3 cut(s) 19, 131, 187
LweI GCATC 3 cut(s) 19, 29, 67
MaeI CTAG 1 cut(s) 14
MalI GATC 2 cut(s) 56, 173
MboI GATC 2 cut(s) 54, 171
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 3 cut(s) 81, 205, 260
Mph1103I ATGCAT 1 cut(s) 44
MseI TTAA 1 cut(s) 277
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 1 cut(s) 32
MwoI GCNNNNNNNGC 3 cut(s) 28, 94, 200
NdeII GATC 2 cut(s) 54, 171
NlaIII CATG 2 cut(s) 170, 229
NsiI ATGCAT 1 cut(s) 44
NspI RCATGY 1 cut(s) 229
PciI ACATGT 1 cut(s) 225
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 3 cut(s) 9, 121, 202
PscI ACATGT 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 222
PsuI RGATCY 1 cut(s) 171
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 277
SatI GCNGC 3 cut(s) 8, 120, 201
Sau3AI GATC 2 cut(s) 54, 171
SduI GDGCHC 1 cut(s) 222
SetI ASST 1 cut(s) 222
SfaNI GCATC 3 cut(s) 19, 29, 67
Sse9I AATT 1 cut(s) 273
SsiI CCGC 1 cut(s) 198
SspMI CTAG 1 cut(s) 14
SstI GAGCTC 1 cut(s) 222
TaqI TCGA 1 cut(s) 255
TasI AATT 1 cut(s) 273
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 277
Tru9I TTAA 1 cut(s) 277
TscAI CASTG 1 cut(s) 196
TseI GCWGC 3 cut(s) 7, 119, 200
TspRI CASTG 1 cut(s) 196
XbaI TCTAGA 1 cut(s) 13
XceI RCATGY 1 cut(s) 229
XspI CTAG 1 cut(s) 14
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.