Rw3G000950

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000189
Physical Location & Seq
Forward (+)
727303 .. 728856
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G000950.1

Sequence Viewer

Length: 861 bp
ATGAAGAGGAATATGATGCAGTATCTAGACTTGCAAGCGTTGCCGGAAGGATGCATTGCCAATGTGATCTCATTGACCAGTCCTCGAGATGCGTGCAGGCTATCGGTGCTTTCTAGGGTTATCAGATTGGCAGCAGAATCCGACGCCGTTTGGGACAAGTTCCTTCCGCCTGAGACCCATGAGATCCTATCCCACTCCGCCACTGCCTCCGCTGCCAAATCCAAGAAGGAGCTCTACATGTCTCTCAGCCACAGCCCCGTCCTCATTGACGATGGCACTATGAGCTTTTCTCTGGAAAAATGGACTGGAAAGAAATGTTACATGATAGCTGCAAAGCGCCTTCGGATTGCTTGGGGTGATACTCCTCTCTATTGGCAATGGATTACTCTGCCTAACACCAGGTTCGAGGAAGTGGCTGAGCTTCAGTGGGTTGGTTGGTTTGAAATTCGTGGGAGAATTGCTACACTTATGCTTTCCCCATCAACTCTATATGAAGCTTATCTTGTGTACAAGTTCAATGCACACTCTTATGGATTTGATTACTCTCCTGTGGTGGTGGCGGTTTCTACAAGGGCTTATGGCTTTGATTATGAATGCCCTAGTTTGAGAGAAATTGTTGATGGAGGAGACCTTAAGCACACTGCCTTTCTGACGCATCCTGAAAGAGAAATGGATGAAGCTGATGATCTGCTGTTTCCAAAGGAAACGGCAGATGGCTGGTTGGAGATGAAGTTGGGTGAATTTTTCTGTGAAGGAGGAAAAGATGAAGAGTTGGAGATGATTTGTTGCGAGATTGATATTAGCAGCAAGAGTGGCATCATTGTGCAAGGGATTGAGATCAGACCATGCGATAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

286

Amino Acids

32.52

Weight (kDa)

4.98

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 104 - 282 8.1e-47 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 167, 198, 210, 560
AclWI GGATC 1 cut(s) 178
AcsI RAATTY 2 cut(s) 444, 740
AcuI CTGAAG 1 cut(s) 407
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 1 cut(s) 509
AflII CTTAAG 1 cut(s) 632
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 2 cut(s) 443, 517
AjnI CCWGG 1 cut(s) 398
AluBI AGCT 6 cut(s) 232, 285, 329, 421, 497, 680
AluI AGCT 6 cut(s) 232, 285, 329, 421, 497, 680
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 3 cut(s) 167, 246, 621
AlwI GGATC 1 cut(s) 178
Ama87I CYCGRG 1 cut(s) 84
ApeKI GCWGC 4 cut(s) 131, 212, 329, 804
ApoI RAATTY 2 cut(s) 444, 740
AspLEI GCGC 1 cut(s) 339
AsuHPI GGTGA 2 cut(s) 368, 749
AvaI CYCGRG 1 cut(s) 84
BanII GRGCYC 1 cut(s) 234
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 4 cut(s) 143, 199, 316, 816
BccI CCATC 4 cut(s) 266, 487, 614, 707
BceAI ACGGC 2 cut(s) 131, 723
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciT130I CCWGG 1 cut(s) 400
BcoDI GTCTC 3 cut(s) 167, 246, 621
BfaI CTAG 4 cut(s) 26, 114, 600, 859
BfoI RGCGCY 1 cut(s) 340
BfrI CTTAAG 1 cut(s) 632
BisI GCNGC 4 cut(s) 132, 213, 330, 805
BlpI GCTNAGC 1 cut(s) 417
BlsI GCNGC 4 cut(s) 133, 214, 331, 806
Bme1390I CCNGG 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 400
BmsI GCATC 5 cut(s) 6, 41, 79, 664, 825
BplI GAGNNNNNCTC 2 cut(s) 274, 306
Bpu1102I GCTNAGC 1 cut(s) 417
BsaBI GATNNNNATC 1 cut(s) 836
BsaHI GRCGYC 1 cut(s) 144
BsaI GGTCTC 2 cut(s) 167, 621
BsaXI ACNNNNNCTCC 2 cut(s) 716, 746
Bse1I ACTGG 2 cut(s) 78, 310
Bse3DI GCAATG 2 cut(s) 54, 383
Bse8I GATNNNNATC 1 cut(s) 836
BseBI CCWGG 1 cut(s) 400
BseGI GGATG 3 cut(s) 56, 655, 679
BseJI GATNNNNATC 1 cut(s) 836
BseMI GCAATG 2 cut(s) 54, 383
BseMII CTCAG 3 cut(s) 162, 259, 408
BseNI ACTGG 2 cut(s) 78, 310
BseRI GAGGAG 2 cut(s) 354, 639
BseXI GCAGC 4 cut(s) 143, 199, 316, 816
BsgI GTGCAG 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 234
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 167
BsmAI GTCTC 3 cut(s) 167, 246, 621
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 599
Bso31I GGTCTC 2 cut(s) 167, 621
BsoBI CYCGRG 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 234
Bsp1407I TGTACA 1 cut(s) 507
Bsp143I GATC 4 cut(s) 66, 183, 685, 837
Bsp1720I GCTNAGC 1 cut(s) 417
BspACI CCGC 4 cut(s) 167, 198, 210, 560
BspCNI CTCAG 3 cut(s) 163, 258, 409
BspPI GGATC 1 cut(s) 178
BspTI CTTAAG 1 cut(s) 632
BspTNI GGTCTC 2 cut(s) 167, 621
BsrDI GCAATG 2 cut(s) 54, 383
BsrGI TGTACA 1 cut(s) 507
BsrI ACTGG 2 cut(s) 78, 310
BssMI GATC 4 cut(s) 66, 183, 685, 837
BssNI GRCGYC 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 400
Bst6I CTCTTC 1 cut(s) 762
BstACI GRCGYC 1 cut(s) 144
BstAFI CTTAAG 1 cut(s) 632
BstAPI GCANNNNNTGC 1 cut(s) 40
BstAUI TGTACA 1 cut(s) 507
BstC8I GCNNGC 3 cut(s) 36, 94, 98
BstDEI CTNAG 3 cut(s) 171, 245, 417
BstF5I GGATG 3 cut(s) 56, 655, 679
BstH2I RGCGCY 1 cut(s) 340
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 4 cut(s) 69, 186, 688, 840
BstMAI GTCTC 3 cut(s) 167, 246, 621
BstMBI GATC 4 cut(s) 66, 183, 685, 837
BstMWI GCNNNNNNNGC 5 cut(s) 40, 106, 212, 282, 813
BstNI CCWGG 1 cut(s) 400
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 398
BstV1I GCAGC 4 cut(s) 143, 199, 316, 816
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BtsCI GGATG 3 cut(s) 56, 655, 679
BtsI GCAGTG 2 cut(s) 201, 639
BtsIMutI CAGTG 3 cut(s) 201, 431, 639
Cac8I GCNNGC 3 cut(s) 36, 94, 98
CfoI GCGC 1 cut(s) 339
CseI GACGC 2 cut(s) 152, 661
CsiI ACCWGGT 1 cut(s) 398
Csp6I GTAC 1 cut(s) 508
CviAII CATG 4 cut(s) 179, 238, 322, 846
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 3 cut(s) 171, 245, 417
DpnI GATC 4 cut(s) 68, 185, 687, 839
DpnII GATC 4 cut(s) 66, 183, 685, 837
Eam1104I CTCTTC 1 cut(s) 762
EarI CTCTTC 1 cut(s) 762
EciI GGCGGA 2 cut(s) 156, 187
Ecl136II GAGCTC 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 234
Eco31I GGTCTC 2 cut(s) 167, 621
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 84
EcoICRI GAGCTC 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 398
EcoT22I ATGCAT 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 234
FaeI CATG 4 cut(s) 182, 241, 325, 849
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FaqI GGGAC 1 cut(s) 167
FatI CATG 4 cut(s) 178, 237, 321, 845
Fnu4HI GCNGC 4 cut(s) 132, 213, 330, 805
FokI GGATG 3 cut(s) 63, 642, 686
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 4 cut(s) 132, 213, 330, 805
FspBI CTAG 4 cut(s) 26, 114, 600, 859
GlaI GCGC 1 cut(s) 338
GluI GCNGC 4 cut(s) 132, 213, 330, 805
HaeII RGCGCY 1 cut(s) 340
HapII CCGG 1 cut(s) 44
HgaI GACGC 2 cut(s) 152, 661
HhaI GCGC 1 cut(s) 339
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 4 cut(s) 182, 241, 325, 849
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HindIII AAGCTT 1 cut(s) 495
HinfI GANTC 1 cut(s) 137
HpaII CCGG 1 cut(s) 44
HphI GGTGA 2 cut(s) 368, 749
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 5 cut(s) 125, 142, 345, 651, 842
Hpy188III TCNNGA 4 cut(s) 26, 86, 293, 659
Hpy8I GTNNAC 1 cut(s) 508
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 5 cut(s) 41, 173, 220, 350, 746
HpyCH4V TGCA 7 cut(s) 19, 34, 54, 96, 332, 521, 826
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 106, 212, 282, 813
HpyF3I CTNAG 3 cut(s) 171, 245, 417
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 4 cut(s) 182, 241, 325, 849
HspAI GCGC 1 cut(s) 337
Kzo9I GATC 4 cut(s) 66, 183, 685, 837
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 4 cut(s) 143, 199, 316, 816
LweI GCATC 5 cut(s) 6, 41, 79, 664, 825
MabI ACCWGGT 1 cut(s) 398
MaeI CTAG 4 cut(s) 26, 114, 600, 859
MaeIII GTNAC 1 cut(s) 317
MalI GATC 4 cut(s) 68, 185, 687, 839
MboI GATC 4 cut(s) 66, 183, 685, 837
MboII GAAGA 2 cut(s) 16, 779
MflI RGATCY 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 4 cut(s) 444, 456, 612, 740
MmeI TCCRAC 3 cut(s) 165, 702, 753
MnlI CCTC 7 cut(s) 93, 217, 272, 375, 400, 617, 749
Mph1103I ATGCAT 1 cut(s) 56
MseI TTAA 1 cut(s) 633
MslI CAYNNNNRTG 2 cut(s) 528, 821
MspA1I CMGCKG 1 cut(s) 212
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 400
Mva1269I GAATGC 1 cut(s) 599
MvaI CCWGG 1 cut(s) 400
MwoI GCNNNNNNNGC 5 cut(s) 40, 106, 212, 282, 813
NdeII GATC 4 cut(s) 66, 183, 685, 837
NlaIII CATG 4 cut(s) 182, 241, 325, 849
NsiI ATGCAT 1 cut(s) 56
NspI RCATGY 1 cut(s) 241
PaeR7I CTCGAG 1 cut(s) 84
PciI ACATGT 1 cut(s) 237
PctI GAATGC 1 cut(s) 599
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 4 cut(s) 133, 214, 331, 806
PscI ACATGT 1 cut(s) 237
Psp124BI GAGCTC 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 398
PspGI CCWGG 1 cut(s) 398
PsuI RGATCY 1 cut(s) 183
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 2 cut(s) 528, 821
SacI GAGCTC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 4 cut(s) 132, 213, 330, 805
Sau3AI GATC 4 cut(s) 66, 183, 685, 837
ScrFI CCNGG 1 cut(s) 400
SduI GDGCHC 1 cut(s) 234
SetI ASST 8 cut(s) 234, 287, 331, 404, 423, 499, 633, 682
SexAI ACCWGGT 1 cut(s) 398
SfaNI GCATC 5 cut(s) 6, 41, 79, 664, 825
Sfr274I CTCGAG 1 cut(s) 84
SlaI CTCGAG 1 cut(s) 84
SmiMI CAYNNNNRTG 2 cut(s) 528, 821
SmlI CTYRAG 2 cut(s) 84, 632
SmoI CTYRAG 2 cut(s) 84, 632
Sse9I AATT 4 cut(s) 444, 456, 612, 740
SsiI CCGC 4 cut(s) 167, 198, 210, 560
SspMI CTAG 4 cut(s) 26, 114, 600, 859
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 398
TaqI TCGA 2 cut(s) 85, 405
TasI AATT 4 cut(s) 444, 456, 612, 740
TatI WGTACW 1 cut(s) 507
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TscAI CASTG 3 cut(s) 208, 431, 646
TseI GCWGC 4 cut(s) 131, 212, 329, 804
TspDTI ATGAA 6 cut(s) 17, 507, 606, 690, 743, 780
TspRI CASTG 3 cut(s) 208, 431, 646
Vha464I CTTAAG 1 cut(s) 632
XapI RAATTY 2 cut(s) 444, 740
XbaI TCTAGA 1 cut(s) 25
XceI RCATGY 1 cut(s) 241
XhoI CTCGAG 1 cut(s) 84
XspI CTAG 4 cut(s) 26, 114, 600, 859
Zsp2I ATGCAT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.