Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000189

Physical Location & Seq

Genomic Coordinates Reverse (-)

608586 .. 610283

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGACAAAAACTCGGCGTTGACTCTAGACAAAAAATCAGACAAGTTCTCGGTTCCTCATCCAAGGTGCAAAAACACGACGTGGAATCTATCGGTGGAGGCGGGGGAGAGATCGTACCCGGTCATTCGCCGTTTGATGACTTGCCGGAGGATTGCATCTCCAACATAATCTCTTTTACAAGTCCACGGGACGTGTGTGTCTCCGCTTCAGTTTCAAAATCCTTCGCACATGCGGTCCAGTGTGATAGTATATGGGAGAAGTTTCTTCCGTCGGAGTATGAATCCCTGATTCCTCCGTGGCGAGTTTTCTCATCGAAGAAGGACCTCTATTTCACTCTTTGCTACGATCCTGTTCTAGTTGAGGATGGCAAAAAGAGCTTTTGGTTAGAGACGGCAAGTGGGAAAAAGTGTGTACTGTTAGCTGCAAAGGAACTGTGGATCACAGGAGGGAATAATCCTGAGTATTGGCAATGGATTGAACTTTGTGAATCTAGTTTTGAAAAGGTACCAGAGCTTCTCAATAATCGTTCTTTCCAGATGGGTGGTAGTATGAGTACCCAAATCTTATCCCTAGGAACTCATTATTCAGTTTACATTGTGTACAAGATAAAAGATGAACGTCATGGCTTACGAGATTTGCCTATACAAGTTGGTGTAGGATTTAAAGGCCAAGAAATGCCTAAACAATTCATATGCTTTGACGAGTCTACCGATAAAACCAAAGAGTGGCCAAAGAAGAAGCTAATGAAATCAAAGAAGAGGGGAGATGGGTGGATGGAGGCAGAGATTGGGGATTTCTTCAATGATGGAGGATTAATGGGTTTTGATGAAGTTGAAGTGAGTATTGTAGACGTTACTTCACCTAATTTGAAGTGTGGTGTGATGATTGAAGGAATTGAATTCCGGCCAAAGGATTGTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

307

Amino Acids

34.48

Weight (kDa)

5.43

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	45 - 86	1.9e-07	F-box domain
F-box-like	PF12937	45 - 88	5.1e-07	F-box-like
PP2	PF14299	135 - 303	5.4e-43	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca	FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica	MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica	Prupe.6G356300_v2.0.a1
pyrus_communis	pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis	RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata	RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora	Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa	Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha	Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana	Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	197
Acc65I	GGTACC	1 cut(s)	505
AccB1I	GGYRCC	1 cut(s)	505
AccB7I	CCANNNNNTGG	1 cut(s)	726
AccI	GTMKAC	2 cut(s)	707, 849
AciI	CCGC	3 cut(s)	102, 204, 233
AclWI	GGATC	2 cut(s)	341, 446
AcoI	YGGCCR	2 cut(s)	728, 905
AcsI	RAATTY	1 cut(s)	899
AcuI	CTGAAG	1 cut(s)	192
AdeI	CACNNNGTG	1 cut(s)	82
AfaI	GTAC	5 cut(s)	117, 414, 507, 556, 602
AfiI	CCNNNNNNNGG	2 cut(s)	726, 910
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	8 cut(s)	216, 479, 500, 802, 836, 871, 890, 899
AjiI	CACGTC	2 cut(s)	82, 193
AluBI	AGCT	4 cut(s)	378, 422, 514, 742
AluI	AGCT	4 cut(s)	378, 422, 514, 742
Alw26I	GTCTC	2 cut(s)	205, 383
AlwI	GGATC	2 cut(s)	341, 446
AoxI	GGCC	3 cut(s)	667, 728, 905
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	1 cut(s)	899
AseI	ATTAAT	1 cut(s)	815
Asp718I	GGTACC	1 cut(s)	505
AspA2I	CCTAGG	1 cut(s)	571
AspS9I	GGNCC	2 cut(s)	235, 322
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	852
AvaII	GGWCC	2 cut(s)	235, 322
AvrII	CCTAGG	1 cut(s)	571
BalI	TGGCCA	1 cut(s)	730
BanI	GGYRCC	1 cut(s)	505
BarI	GAAGNNNNNNTAC	2 cut(s)	498, 530
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	5 cut(s)	359, 532, 761, 769, 800
BceAI	ACGGC	2 cut(s)	115, 408
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	2 cut(s)	205, 383
BfaI	CTAG	4 cut(s)	27, 356, 492, 572
BisI	GCNGC	1 cut(s)	423
BlnI	CCTAGG	1 cut(s)	571
BlsI	GCNGC	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	2 cut(s)	235, 322
BmgBI	CACGTC	2 cut(s)	82, 193
BmgT120I	GGNCC	2 cut(s)	235, 322
BmiI	GGNNCC	2 cut(s)	55, 507
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	120
BsaJI	CCNNGG	4 cut(s)	63, 185, 296, 571
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	2 cut(s)	726, 910
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	476
BseDI	CCNNGG	4 cut(s)	63, 185, 296, 571
BseGI	GGATG	3 cut(s)	59, 370, 780
BseLI	CCNNNNNNNGG	2 cut(s)	726, 910
BseMI	GCAATG	1 cut(s)	476
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	409
BshFI	GGCC	3 cut(s)	669, 730, 907
BshNI	GGYRCC	1 cut(s)	505
BsiSI	CCGG	3 cut(s)	120, 146, 904
BslFI	GGGAC	2 cut(s)	18, 203
BslI	CCNNNNNNNGG	2 cut(s)	726, 910
BsmAI	GTCTC	2 cut(s)	205, 383
BsmBI	CGTCTC	1 cut(s)	383
BsmFI	GGGAC	2 cut(s)	18, 203
BsnI	GGCC	3 cut(s)	669, 730, 907
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	3 cut(s)	111, 346, 438
BspACI	CCGC	3 cut(s)	102, 204, 233
BspANI	GGCC	3 cut(s)	669, 730, 907
BspCNI	CTCAG	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	55, 507
BspPI	GGATC	2 cut(s)	341, 446
BspT107I	GGYRCC	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	476
BsrGI	TGTACA	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	4 cut(s)	63, 185, 296, 571
BssMI	GATC	3 cut(s)	111, 346, 438
BssT1I	CCWWGG	2 cut(s)	63, 571
Bst4CI	ACNGT	2 cut(s)	417, 435
Bst6I	CTCTTC	1 cut(s)	752
BstAUI	TGTACA	1 cut(s)	600
BstDEI	CTNAG	1 cut(s)	459
BstDSI	CCRYGG	2 cut(s)	185, 296
BstF5I	GGATG	3 cut(s)	59, 370, 780
BstKTI	GATC	3 cut(s)	114, 349, 441
BstMAI	GTCTC	2 cut(s)	205, 383
BstMBI	GATC	3 cut(s)	111, 346, 438
BstMWI	GCNNNNNNNGC	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	409
BstXI	CCANNNNNNTGG	1 cut(s)	542
BsuRI	GGCC	3 cut(s)	669, 730, 907
BtgI	CCRYGG	2 cut(s)	185, 296
BtrI	CACGTC	2 cut(s)	82, 193
BtsCI	GGATG	3 cut(s)	59, 370, 780
BtsIMutI	CAGTG	1 cut(s)	245
Cfr13I	GGNCC	2 cut(s)	235, 322
Csp6I	GTAC	5 cut(s)	116, 413, 506, 555, 601
CviAII	CATG	2 cut(s)	230, 623
CviJI	RGCY	8 cut(s)	378, 422, 514, 627, 669, 730, 742, 907
CviKI_1	RGCY	8 cut(s)	378, 422, 514, 627, 669, 730, 742, 907
CviQI	GTAC	5 cut(s)	116, 413, 506, 555, 601
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	3 cut(s)	113, 348, 440
DpnII	GATC	3 cut(s)	111, 346, 438
DraI	TTTAAA	1 cut(s)	664
DraIII	CACNNNGTG	1 cut(s)	82
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
EaeI	YGGCCR	2 cut(s)	728, 905
Eam1104I	CTCTTC	1 cut(s)	752
EarI	CTCTTC	1 cut(s)	752
Eco130I	CCWWGG	2 cut(s)	63, 571
Eco47I	GGWCC	2 cut(s)	235, 322
Eco57I	CTGAAG	1 cut(s)	192
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	899
EcoT14I	CCWWGG	2 cut(s)	63, 571
ErhI	CCWWGG	2 cut(s)	63, 571
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	2 cut(s)	233, 626
FaqI	GGGAC	2 cut(s)	18, 203
FatI	CATG	2 cut(s)	229, 622
FauI	CCCGC	1 cut(s)	95
FauNDI	CATATG	1 cut(s)	692
FblI	GTMKAC	2 cut(s)	707, 849
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	3 cut(s)	46, 377, 787
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	4 cut(s)	27, 356, 492, 572
GluI	GCNGC	1 cut(s)	423
HaeIII	GGCC	3 cut(s)	669, 730, 907
HapII	CCGG	3 cut(s)	120, 146, 904
Hin1II	CATG	2 cut(s)	233, 626
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	6 cut(s)	23, 86, 281, 289, 488, 704
HpaII	CCGG	3 cut(s)	120, 146, 904
HphI	GGTGA	1 cut(s)	852
Hpy166II	GTNNAC	7 cut(s)	22, 185, 413, 592, 601, 708, 850
Hpy188I	TCNGA	2 cut(s)	41, 274
Hpy188III	TCNNGA	3 cut(s)	27, 458, 535
Hpy8I	GTNNAC	7 cut(s)	22, 185, 413, 592, 601, 708, 850
Hpy99I	CGWCG	2 cut(s)	83, 274
HpyAV	CCTTC	3 cut(s)	232, 313, 884
HpyCH4III	ACNGT	2 cut(s)	417, 435
HpyCH4IV	ACGT	4 cut(s)	81, 192, 619, 852
HpyCH4V	TGCA	3 cut(s)	70, 156, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	375
HpyF3I	CTNAG	1 cut(s)	459
HpySE526I	ACGT	4 cut(s)	81, 192, 619, 852
Hsp92II	CATG	2 cut(s)	233, 626
KpnI	GGTACC	1 cut(s)	509
Kzo9I	GATC	3 cut(s)	111, 346, 438
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	4 cut(s)	27, 356, 492, 572
MaeII	ACGT	4 cut(s)	81, 192, 619, 852
MaeIII	GTNAC	1 cut(s)	853
MalI	GATC	3 cut(s)	113, 348, 440
MboI	GATC	3 cut(s)	111, 346, 438
MboII	GAAGA	5 cut(s)	257, 328, 748, 769, 790
MlsI	TGGCCA	1 cut(s)	730
MluCI	AATT	4 cut(s)	686, 865, 894, 899
MluNI	TGGCCA	1 cut(s)	730
MlyI	GAGTC	2 cut(s)	17, 713
MmeI	TCCRAC	2 cut(s)	186, 252
Mox20I	TGGCCA	1 cut(s)	730
MscI	TGGCCA	1 cut(s)	730
MseI	TTAA	2 cut(s)	663, 815
Msp20I	TGGCCA	1 cut(s)	730
MspI	CCGG	3 cut(s)	120, 146, 904
MspR9I	CCNGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	375
NciI	CCSGG	1 cut(s)	120
NdeI	CATATG	1 cut(s)	692
NdeII	GATC	3 cut(s)	111, 346, 438
NlaIII	CATG	2 cut(s)	233, 626
NlaIV	GGNNCC	2 cut(s)	55, 507
NspI	RCATGY	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	708
PfeI	GAWTC	4 cut(s)	86, 281, 289, 488
PflMI	CCANNNNNTGG	1 cut(s)	726
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	2 cut(s)	17, 712
PpsI	GAGTC	2 cut(s)	17, 712
PpuMI	RGGWCCY	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	815
Psp5II	RGGWCCY	1 cut(s)	322
PspN4I	GGNNCC	2 cut(s)	55, 507
PspPI	GGNCC	2 cut(s)	235, 322
PspPPI	RGGWCCY	1 cut(s)	322
RsaI	GTAC	5 cut(s)	117, 414, 507, 556, 602
RsaNI	GTAC	5 cut(s)	116, 413, 506, 555, 601
SaqAI	TTAA	2 cut(s)	663, 815
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	3 cut(s)	111, 346, 438
Sau96I	GGNCC	2 cut(s)	235, 322
SchI	GAGTC	2 cut(s)	17, 713
ScrFI	CCNGG	1 cut(s)	120
SfaNI	GCATC	1 cut(s)	165
SinI	GGWCC	2 cut(s)	235, 322
Sse9I	AATT	4 cut(s)	686, 865, 894, 899
SsiI	CCGC	3 cut(s)	102, 204, 233
SspMI	CTAG	4 cut(s)	27, 356, 492, 572
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	2 cut(s)	63, 571
TaaI	ACNGT	2 cut(s)	417, 435
TaiI	ACGT	4 cut(s)	84, 195, 622, 855
TaqI	TCGA	1 cut(s)	314
TasI	AATT	4 cut(s)	686, 865, 894, 899
TatI	WGTACW	2 cut(s)	412, 600
TfiI	GAWTC	4 cut(s)	86, 281, 289, 488
Tru1I	TTAA	2 cut(s)	663, 815
Tru9I	TTAA	2 cut(s)	663, 815
TscAI	CASTG	1 cut(s)	245
TseI	GCWGC	1 cut(s)	422
TspDTI	ATGAA	5 cut(s)	294, 630, 679, 761, 843
TspGWI	ACGGA	2 cut(s)	258, 285
TspRI	CASTG	1 cut(s)	245
Van91I	CCANNNNNTGG	1 cut(s)	726
VpaK11BI	GGWCC	2 cut(s)	235, 322
VspI	ATTAAT	1 cut(s)	815
XapI	RAATTY	1 cut(s)	899
XbaI	TCTAGA	1 cut(s)	26
XceI	RCATGY	1 cut(s)	233
XmaJI	CCTAGG	1 cut(s)	571
XmiI	GTMKAC	2 cut(s)	707, 849
XspI	CTAG	4 cut(s)	27, 356, 492, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.