Rorug02G0614900

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
73244535 .. 73244744
210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0614900.1

Sequence Viewer

Length: 210 bp
ATGTACGCCAAGCGTGCTTTTGTGCATTGGTATGTGGGTGAAGGCATGAAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATCTCGCTGCTCTGGAGAAGGATTATGAGGAGGTTGATGCCGAGTGTGCTGGGGAAGTTGATGGCGTAGTTTGGTTCAGTTTCCACTGGGTGGTTCCATTTGGGTGTTGGATAAGTTACACATGCAAATAA
Functional Annotation

Protein Analysis

69

Amino Acids

8.01

Weight (kDa)

4.47

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 169
AclWI GGATC 1 cut(s) 87
AdeI CACNNNGTG 1 cut(s) 169
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 169
AloI GAACNNNNNNTCC 2 cut(s) 44, 76
AlwI GGATC 1 cut(s) 87
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 50
BbvI GCAGC 1 cut(s) 73
BccI CCATC 1 cut(s) 134
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 174
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 1 cut(s) 106
BmuI ACTGGG 1 cut(s) 175
BpmI CTGGAG 1 cut(s) 113
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 73
BseYI CCCAGC 1 cut(s) 128
BshFI GGCC 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 169
BsnI GGCC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 79
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 174
BspPI GGATC 1 cut(s) 87
BsrI ACTGG 1 cut(s) 170
BssMI GATC 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 66
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 14, 125
BstNSI RCATGY 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 1 cut(s) 71
BtsIMutI CAGTG 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 46, 201
CviJI RGCY 1 cut(s) 71
CviKI_1 RGCY 1 cut(s) 71
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 66
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
DraIII CACNNNGTG 1 cut(s) 169
FaeI CATG 2 cut(s) 49, 204
FaiI YATR 4 cut(s) 33, 47, 105, 202
FatI CATG 2 cut(s) 45, 200
Fnu4HI GCNGC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 87
GsaI CCCAGC 1 cut(s) 132
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 2 cut(s) 49, 204
HphI GGTGA 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 92
HpyAV CCTTC 4 cut(s) 35, 43, 47, 91
HpyCH4V TGCA 2 cut(s) 25, 204
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 125
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 2 cut(s) 49, 204
Kzo9I GATC 1 cut(s) 79
LpnPI CCDG 3 cut(s) 77, 114, 151
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 194
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MflI RGATCY 1 cut(s) 79
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 4 cut(s) 61, 70, 100, 103
MslI CAYNNNNRTG 2 cut(s) 30, 181
MwoI GCNNNNNNNGC 2 cut(s) 14, 125
NdeII GATC 1 cut(s) 79
NlaIII CATG 2 cut(s) 49, 204
NlaIV GGNNCC 1 cut(s) 174
NmeAIII GCCGAG 1 cut(s) 145
NspI RCATGY 1 cut(s) 204
PflMI CCANNNNNTGG 1 cut(s) 169
PkrI GCNGC 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 70
PsuI RGATCY 1 cut(s) 79
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 30, 181
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 1 cut(s) 70
SetI ASST 1 cut(s) 114
SfaNI GCATC 1 cut(s) 106
SmiMI CAYNNNNRTG 2 cut(s) 30, 181
TscAI CASTG 1 cut(s) 170
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 62
TspRI CASTG 1 cut(s) 170
Van91I CCANNNNNTGG 1 cut(s) 169
XceI RCATGY 1 cut(s) 204
XcmI CCANNNNNNNNNTGG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.