Rmu_co8448943.1_g000001

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8448943.1
OG0000189
Physical Location & Seq
Reverse (-)
1248 .. 1646
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8448943.1_g000001.1.cds

Sequence Viewer

Length: 399 bp
atgctgtccccatccacaacgtataaagcttatctggtgtacaagttaactaaacgcacttatggactagactggcctgccgtggtcacagttggtgcaagagcttatggatttgattatgaatgccctggtttgaaggaaataactgcaggcattaagcatactgcgattctggtgccccaaagaaaaatagaaggacatctcacaagacatcatgaaatcaatgaagttaaatttccaaatgaaagcagggcggatgggtggctggagatggagctgggtgagtttcactgtcaaggagacgaagacggggagttggaaatgatttgttgtgagactagtatgggtaagagtggtctccttgttcaagggattgaggttagaccaaaaaggaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

132

Amino Acids

14.9

Weight (kDa)

5.95

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AciI CCGC 1 cut(s) 254
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 1 cut(s) 41
AgsI TTSAA 2 cut(s) 136, 368
AhlI ACTAGT 1 cut(s) 338
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 3 cut(s) 29, 104, 277
AluI AGCT 3 cut(s) 29, 104, 277
Alw26I GTCTC 3 cut(s) 294, 329, 362
AoxI GGCC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 180
BanI GGYRCC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 312
BccI CCATC 3 cut(s) 19, 251, 265
BceAI ACGGC 1 cut(s) 65
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 1 cut(s) 129
BcoDI GTCTC 3 cut(s) 294, 329, 362
BcuI ACTAGT 1 cut(s) 338
BfaI CTAG 3 cut(s) 68, 339, 397
BfmI CTRYAG 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 287
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 81, 127
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 81, 127
BseGI GGATG 2 cut(s) 11, 262
BseNI ACTGG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 180
BseYI CCCAGC 1 cut(s) 277
BshFI GGCC 1 cut(s) 76
BshNI GGYRCC 1 cut(s) 175
BsmAI GTCTC 3 cut(s) 294, 329, 362
BsmBI CGTCTC 1 cut(s) 294
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 1 cut(s) 76
Bso31I GGTCTC 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 180
Bsp1407I TGTACA 1 cut(s) 39
BspACI CCGC 1 cut(s) 254
BspANI GGCC 1 cut(s) 76
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 362
BsrGI TGTACA 1 cut(s) 39
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 81, 127
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 91, 293
BstAUI TGTACA 1 cut(s) 39
BstC8I GCNNGC 2 cut(s) 78, 151
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 11, 262
BstMAI GTCTC 3 cut(s) 294, 329, 362
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 147
BstSLI GKGCMC 1 cut(s) 180
BstV2I GAAGAC 1 cut(s) 312
BsuRI GGCC 1 cut(s) 76
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 2 cut(s) 11, 262
BtsIMutI CAGTG 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 78, 151
CciI TCATGA 1 cut(s) 214
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 215
CviJI RGCY 5 cut(s) 29, 76, 104, 265, 277
CviKI_1 RGCY 5 cut(s) 29, 76, 104, 265, 277
CviQI GTAC 1 cut(s) 40
EciI GGCGGA 1 cut(s) 269
Eco31I GGTCTC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 294
FaeI CATG 1 cut(s) 218
FaiI YATR 7 cut(s) 24, 63, 108, 120, 162, 216, 344
FatI CATG 1 cut(s) 214
FokI GGATG 1 cut(s) 269
FspBI CTAG 3 cut(s) 68, 339, 397
GsaI CCCAGC 1 cut(s) 281
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 1 cut(s) 76
Hin1II CATG 1 cut(s) 218
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 1 cut(s) 169
HpaI GTTAAC 1 cut(s) 48
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 2 cut(s) 40, 48
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 2 cut(s) 40, 48
HpyAV CCTTC 2 cut(s) 130, 188
HpyCH4III ACNGT 2 cut(s) 91, 293
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 2 cut(s) 98, 149
HpySE526I ACGT 1 cut(s) 20
Hsp92II CATG 1 cut(s) 218
KspAI GTTAAC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 274
MaeI CTAG 3 cut(s) 68, 339, 397
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 85
MboII GAAGA 1 cut(s) 317
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 1 cut(s) 370
MseI TTAA 3 cut(s) 47, 156, 231
MspR9I CCNGG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 128
MvaI CCWGG 1 cut(s) 129
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 85
PagI TCATGA 1 cut(s) 214
PctI GAATGC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 277
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 177
PstI CTGCAG 1 cut(s) 151
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SaqAI TTAA 3 cut(s) 47, 156, 231
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 1 cut(s) 180
SetI ASST 5 cut(s) 23, 31, 106, 279, 381
SfcI CTRYAG 1 cut(s) 147
SpeI ACTAGT 1 cut(s) 338
Sse9I AATT 1 cut(s) 233
SsiI CCGC 1 cut(s) 254
SspMI CTAG 3 cut(s) 68, 339, 397
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 2 cut(s) 91, 293
TaiI ACGT 1 cut(s) 23
TasI AATT 1 cut(s) 233
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 3 cut(s) 47, 156, 231
Tru9I TTAA 3 cut(s) 47, 156, 231
TscAI CASTG 1 cut(s) 296
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 4 cut(s) 135, 231, 240, 258
TspRI CASTG 1 cut(s) 296
XapI RAATTY 1 cut(s) 233
XspI CTAG 3 cut(s) 68, 339, 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.