RLG00000025900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000189
Physical Location & Seq
Reverse (-)
49057590 .. 49062360
4771 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025900

Sequence Viewer

Length: 669 bp
ATGATGCAGCATCTAGACTTGCAAGCGTTGCCGGAAGGATGCATTGCCAATGTGATCTCATTGACCAGTCCTCCAGATGCGTGCAGGCTATCGGTGCTTTCTAGGGTTATCAGATTGGCAGCAGAATCCGACGCCGTTTGGGACAAGTTCCTGCCCCCTGAGACCCATGAGATCCTATCCCACTCTACCACTGCCTCCGCTGCCAAATCCAAGAAAGAGCTCTACATGCCTCTCAGCCACAGCCCCGTCCTCATCGACAATAGCACTATGAGCTTTTCTCTGGAAAAATGGACTGGAAAGAAATGTTACATGATAGCTGCAAAGCGCCTTCGGATTGCTTGGGGTGATACTCCTCGATATTGGCCAGGGGAACACCACTGTGGCAACGGATTACTCTGCCTAGCACCAGGTTTGTTTGAGGAGGTTGCTAAGCTTCGGGTGGTTGGTTGGTTTGAAATTCGTGCGAGAATTGCTACTCGCATGCTTTCTCCATCCACTCTATATAAAGCTTATCTTGTGTACAAGTTTAATGAACGCCCATGGACATTTGACAACCATCCCACGGCGGTGGCCGTTTCTGCAAGGTCTTATGGCTTTGATTACGAATGCCCGAGTTTGAGTGAAATGGTTGAAGGAGGAGAGCTTAAGTACAATGACTTTCTGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

223

Amino Acids

24.97

Weight (kDa)

7.04

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 100 - 194 1.3e-21 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 198, 566
AclWI GGATC 1 cut(s) 166
AcoI YGGCCR 2 cut(s) 362, 570
AcsI RAATTY 1 cut(s) 456
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 2 cut(s) 521, 650
AfiI CCNNNNNNNGG 1 cut(s) 562
AflII CTTAAG 1 cut(s) 644
AgsI TTSAA 2 cut(s) 455, 632
AjnI CCWGG 2 cut(s) 364, 406
AleI CACNNNNGTG 2 cut(s) 378, 566
AluBI AGCT 6 cut(s) 220, 273, 317, 433, 509, 643
AluI AGCT 6 cut(s) 220, 273, 317, 433, 509, 643
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 166
Ama87I CYCGRG 1 cut(s) 610
AoxI GGCC 2 cut(s) 362, 570
ApeKI GCWGC 4 cut(s) 7, 119, 200, 317
ApoI RAATTY 1 cut(s) 456
AspLEI GCGC 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 356
AvaI CYCGRG 1 cut(s) 610
BalI TGGCCA 1 cut(s) 364
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 4 cut(s) 19, 131, 187, 304
BccI CCATC 2 cut(s) 499, 564
BceAI ACGGC 3 cut(s) 119, 557, 579
BciT130I CCWGG 2 cut(s) 366, 408
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 3 cut(s) 14, 102, 401
BfoI RGCGCY 1 cut(s) 328
BfrI CTTAAG 1 cut(s) 644
BisI GCNGC 4 cut(s) 8, 120, 201, 318
BlpI GCTNAGC 1 cut(s) 429
BlsI GCNGC 4 cut(s) 9, 121, 202, 319
Bme1390I CCNGG 2 cut(s) 366, 408
BmeT110I CYCGRG 1 cut(s) 610
BmrFI CCNGG 2 cut(s) 366, 408
BmsI GCATC 3 cut(s) 19, 29, 67
BplI GAGNNNNNCTC 2 cut(s) 262, 294
BpmI CTGGAG 1 cut(s) 57
Bpu1102I GCTNAGC 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 3 cut(s) 365, 539, 561
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 1 cut(s) 562
Bse1I ACTGG 2 cut(s) 66, 298
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 2 cut(s) 366, 408
BseDI CCNNGG 3 cut(s) 365, 539, 561
BseGI GGATG 3 cut(s) 44, 491, 556
BseLI CCNNNNNNNGG 1 cut(s) 562
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 2 cut(s) 150, 247
BseNI ACTGG 2 cut(s) 66, 298
BseRI GAGGAG 3 cut(s) 342, 434, 651
BseXI GCAGC 4 cut(s) 19, 131, 187, 304
BsgI GTGCAG 1 cut(s) 103
BshFI GGCC 2 cut(s) 364, 572
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 610
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 562
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 155
BsmI GAATGC 1 cut(s) 611
BsnI GGCC 2 cut(s) 364, 572
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 610
Bsp1286I GDGCHC 1 cut(s) 222
Bsp1407I TGTACA 1 cut(s) 519
Bsp143I GATC 2 cut(s) 54, 171
Bsp1720I GCTNAGC 1 cut(s) 429
Bsp19I CCATGG 1 cut(s) 539
BspACI CCGC 2 cut(s) 198, 566
BspANI GGCC 2 cut(s) 364, 572
BspCNI CTCAG 2 cut(s) 151, 246
BspPI GGATC 1 cut(s) 166
BspTI CTTAAG 1 cut(s) 644
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 42
BsrGI TGTACA 1 cut(s) 519
BsrI ACTGG 2 cut(s) 66, 298
BssECI CCNNGG 3 cut(s) 365, 539, 561
BssMI GATC 2 cut(s) 54, 171
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 539
Bst2UI CCWGG 2 cut(s) 366, 408
Bst4CI ACNGT 1 cut(s) 380
BstACI GRCGYC 1 cut(s) 132
BstAFI CTTAAG 1 cut(s) 644
BstAPI GCANNNNNTGC 1 cut(s) 28
BstAUI TGTACA 1 cut(s) 519
BstC8I GCNNGC 4 cut(s) 24, 82, 86, 482
BstDEI CTNAG 3 cut(s) 159, 233, 429
BstDSI CCRYGG 2 cut(s) 539, 561
BstF5I GGATG 3 cut(s) 44, 491, 556
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 2 cut(s) 57, 174
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 54, 171
BstMWI GCNNNNNNNGC 7 cut(s) 28, 94, 200, 226, 270, 470, 578
BstNI CCWGG 2 cut(s) 366, 408
BstNSI RCATGY 2 cut(s) 229, 484
BstSCI CCNGG 2 cut(s) 364, 406
BstV1I GCAGC 4 cut(s) 19, 131, 187, 304
BstX2I RGATCY 1 cut(s) 171
BstXI CCANNNNNNTGG 1 cut(s) 568
BstYI RGATCY 1 cut(s) 171
BsuRI GGCC 2 cut(s) 364, 572
BtgI CCRYGG 2 cut(s) 539, 561
BtsCI GGATG 3 cut(s) 44, 491, 556
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 189, 376
Cac8I GCNNGC 4 cut(s) 24, 82, 86, 482
CfoI GCGC 1 cut(s) 327
CseI GACGC 1 cut(s) 140
CsiI ACCWGGT 1 cut(s) 406
Csp6I GTAC 2 cut(s) 520, 649
CviAII CATG 5 cut(s) 167, 226, 310, 481, 540
CviQI GTAC 2 cut(s) 520, 649
DdeI CTNAG 3 cut(s) 159, 233, 429
DpnI GATC 2 cut(s) 56, 173
DpnII GATC 2 cut(s) 54, 171
EaeI YGGCCR 2 cut(s) 362, 570
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 539
Eco24I GRGCYC 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 610
EcoICRI GAGCTC 1 cut(s) 220
EcoRII CCWGG 2 cut(s) 364, 406
EcoT14I CCWWGG 1 cut(s) 539
EcoT22I ATGCAT 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 539
FaeI CATG 5 cut(s) 170, 229, 313, 484, 543
FaiI YATR 9 cut(s) 168, 227, 269, 311, 482, 502, 504, 541, 591
FalI AAGNNNNNCTT 2 cut(s) 498, 530
FaqI GGGAC 1 cut(s) 155
FatI CATG 5 cut(s) 166, 225, 309, 480, 539
Fnu4HI GCNGC 4 cut(s) 8, 120, 201, 318
FokI GGATG 3 cut(s) 51, 478, 543
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 4 cut(s) 8, 120, 201, 318
FspBI CTAG 3 cut(s) 14, 102, 401
GlaI GCGC 1 cut(s) 326
GluI GCNGC 4 cut(s) 8, 120, 201, 318
GsuI CTGGAG 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 2 cut(s) 364, 572
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 140
HhaI GCGC 1 cut(s) 327
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 5 cut(s) 170, 229, 313, 484, 543
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HindIII AAGCTT 2 cut(s) 431, 507
HinfI GANTC 1 cut(s) 125
HpaII CCGG 1 cut(s) 32
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 3 cut(s) 113, 130, 333
Hpy188III TCNNGA 3 cut(s) 14, 74, 281
Hpy8I GTNNAC 1 cut(s) 520
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 3 cut(s) 29, 338, 626
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4V TGCA 6 cut(s) 7, 22, 42, 84, 320, 581
HpyF10VI GCNNNNNNNGC 7 cut(s) 28, 94, 200, 226, 270, 470, 578
HpyF3I CTNAG 3 cut(s) 159, 233, 429
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 5 cut(s) 170, 229, 313, 484, 543
HspAI GCGC 1 cut(s) 325
Kzo9I GATC 2 cut(s) 54, 171
Lsp1109I GCAGC 4 cut(s) 19, 131, 187, 304
LweI GCATC 3 cut(s) 19, 29, 67
MabI ACCWGGT 1 cut(s) 406
MaeI CTAG 3 cut(s) 14, 102, 401
MaeIII GTNAC 1 cut(s) 305
MalI GATC 2 cut(s) 56, 173
MboI GATC 2 cut(s) 54, 171
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 222
MlsI TGGCCA 1 cut(s) 364
MluCI AATT 2 cut(s) 456, 468
MluNI TGGCCA 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 8 cut(s) 81, 205, 240, 260, 363, 412, 415, 629
Mox20I TGGCCA 1 cut(s) 364
Mph1103I ATGCAT 1 cut(s) 44
MscI TGGCCA 1 cut(s) 364
MseI TTAA 2 cut(s) 528, 645
MslI CAYNNNNRTG 2 cut(s) 378, 566
Msp20I TGGCCA 1 cut(s) 364
MspA1I CMGCKG 1 cut(s) 200
MspCI CTTAAG 1 cut(s) 644
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 2 cut(s) 366, 408
Mva1269I GAATGC 1 cut(s) 611
MvaI CCWGG 2 cut(s) 366, 408
MwoI GCNNNNNNNGC 7 cut(s) 28, 94, 200, 226, 270, 470, 578
NcoI CCATGG 1 cut(s) 539
NdeII GATC 2 cut(s) 54, 171
NlaIII CATG 5 cut(s) 170, 229, 313, 484, 543
NsiI ATGCAT 1 cut(s) 44
NspI RCATGY 2 cut(s) 229, 484
OliI CACNNNNGTG 2 cut(s) 378, 566
PaeI GCATGC 1 cut(s) 484
PctI GAATGC 1 cut(s) 611
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 4 cut(s) 9, 121, 202, 319
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 2 cut(s) 364, 406
PspGI CCWGG 2 cut(s) 364, 406
PsuI RGATCY 1 cut(s) 171
RsaI GTAC 2 cut(s) 521, 650
RsaNI GTAC 2 cut(s) 520, 649
RseI CAYNNNNRTG 2 cut(s) 378, 566
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 2 cut(s) 528, 645
SatI GCNGC 4 cut(s) 8, 120, 201, 318
Sau3AI GATC 2 cut(s) 54, 171
ScrFI CCNGG 2 cut(s) 366, 408
SduI GDGCHC 1 cut(s) 222
SetI ASST 9 cut(s) 222, 275, 319, 412, 426, 435, 511, 587, 645
SexAI ACCWGGT 1 cut(s) 406
SfaNI GCATC 3 cut(s) 19, 29, 67
SmiMI CAYNNNNRTG 2 cut(s) 378, 566
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
SphI GCATGC 1 cut(s) 484
Sse9I AATT 2 cut(s) 456, 468
SsiI CCGC 2 cut(s) 198, 566
SspMI CTAG 3 cut(s) 14, 102, 401
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 2 cut(s) 364, 406
StyI CCWWGG 1 cut(s) 539
TaaI ACNGT 1 cut(s) 380
TaqI TCGA 2 cut(s) 255, 355
TasI AATT 2 cut(s) 456, 468
TatI WGTACW 2 cut(s) 519, 648
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 2 cut(s) 528, 645
Tru9I TTAA 2 cut(s) 528, 645
TscAI CASTG 2 cut(s) 196, 383
TseI GCWGC 4 cut(s) 7, 119, 200, 317
TspDTI ATGAA 1 cut(s) 546
TspGWI ACGGA 1 cut(s) 402
TspRI CASTG 2 cut(s) 196, 383
Vha464I CTTAAG 1 cut(s) 644
XapI RAATTY 1 cut(s) 456
XbaI TCTAGA 1 cut(s) 13
XceI RCATGY 2 cut(s) 229, 484
XspI CTAG 3 cut(s) 14, 102, 401
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.