Rh3DG014300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000189
Physical Location & Seq
Reverse (-)
845011 .. 847481
2471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG014300.1

Sequence Viewer

Length: 951 bp
ATGCGTAACGATGAAGAAGATGGACGAGGAGGAGGAATCACCTGCGGCGCTGTGACGGTGGAGCTGGATCTGCAGGCTTTGCCGGAGGGATGCATAGCCAACGTCATCTCCCTGACGACTCCTCCCGATGCGTGCCGGCTGTCGTCGGTTTCGAGGAGTTTCAGGTCGGCCGCCGAATCCGACGCCGTTTGGAGCAGGTTCCTGCCGCCGGAGATTCCCACCATCCTGTCTCACTCGGGGCCTCACGCCCCCAGTTGCCGATCCAAATCCAAGGAGTTCTACCTCGCTCTCTGCGACAATCCAGTGCTCATTGACGATGGCAAAATGAGCTTTTCACTAGACAAATGGAGTGGGAAAAAATGTTACATGGTATCTGCAAGGGACCTTGTGATTGTTTGGGCTGATACTCCTAACTATTGGAAGTGGATTTCTCTGCCCGAGTCCAGCAAAAACAGATTTGAGGAGGTTGCTGAGCTTGTTGGTGTTTGCTGGCTTGAAATCCGTGGCAAAATTGACACTCGCTTGCTGTCCCCATCGACTGTGTACAAAGCTTACCTTGTGTTCAAGTCAACTGCAGCGGCTTATGGATTTGACTACCAACCAGCCGAGGTCAGTGTAGGTCTGGTTGGAGGAGCAGAACCCACAAAGAAGACTGTGTTTCTTGACGCCGATAGAGGCCGGACTCAGAGCTACCAGATTGTGCCAAGGCGTCTTGGCCTACACCTGAGAAACCGCATTTTGGTACAAGTATCCCAGCCCAGAGAGATCAATGACAATCAATACCCGAAGGAAAGAGCAGACGGGTGGTTGGAGATTGAGCTGGGTGAGTTCTTCTGTGAAGGAGGAGTAGATGGGGAGTTGGAAATGACTTGTTTGGAAACCGGGGGTGGTCAGTGGAAGGGTGGTCTTATTGTTCAAGGCATTGAGGTCAGGCCAAAGAGGAAGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

316

Amino Acids

35.01

Weight (kDa)

5.63

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 25 - 67 2.8e-06 F-box-like
F-box PF00646 25 - 65 4.1e-06 F-box domain
PP2 PF14299 119 - 312 8e-57 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 50
Acc36I ACCTGC 2 cut(s) 50, 186
AciI CCGC 5 cut(s) 45, 171, 206, 578, 733
AclWI GGATC 2 cut(s) 75, 255
AcoI YGGCCR 1 cut(s) 168
AcyI GRCGYC 3 cut(s) 183, 666, 709
AfaI GTAC 2 cut(s) 545, 744
AfiI CCNNNNNNNGG 2 cut(s) 208, 739
AgsI TTSAA 3 cut(s) 497, 565, 917
AluBI AGCT 6 cut(s) 64, 330, 475, 551, 690, 820
AluI AGCT 6 cut(s) 64, 330, 475, 551, 690, 820
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 2 cut(s) 75, 255
Ama87I CYCGRG 2 cut(s) 235, 437
AoxI GGCC 5 cut(s) 168, 239, 676, 715, 932
ApeKI GCWGC 1 cut(s) 575
ArsI GACNNNNNNTTYG 1 cut(s) 929
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 239, 382
AsuC2I CCSGG 1 cut(s) 883
AsuHPI GGTGA 2 cut(s) 31, 836
AvaI CYCGRG 2 cut(s) 235, 437
AvaII GGWCC 1 cut(s) 382
BbsI GAAGAC 1 cut(s) 656
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 587
BccI CCATC 5 cut(s) 14, 230, 311, 541, 845
BceAI ACGGC 1 cut(s) 170
BciVI GTATCC 1 cut(s) 760
BcnI CCSGG 1 cut(s) 883
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 2 cut(s) 338, 949
BfmI CTRYAG 2 cut(s) 71, 573
BfoI RGCGCY 1 cut(s) 51
BfuAI ACCTGC 2 cut(s) 50, 186
BfuI GTATCC 1 cut(s) 760
BisI GCNGC 5 cut(s) 46, 171, 206, 576, 579
BlpI GCTNAGC 1 cut(s) 471
BlsI GCNGC 5 cut(s) 47, 172, 207, 577, 580
Bme1390I CCNGG 1 cut(s) 883
Bme18I GGWCC 1 cut(s) 382
BmeT110I CYCGRG 2 cut(s) 235, 437
BmgT120I GGNCC 2 cut(s) 239, 382
BmiI GGNNCC 3 cut(s) 200, 240, 383
BmrFI CCNGG 1 cut(s) 883
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 2 cut(s) 80, 118
BmuI ACTGGG 1 cut(s) 246
BpiI GAAGAC 1 cut(s) 656
Bpu1102I GCTNAGC 1 cut(s) 471
BpuMI CCSGG 1 cut(s) 883
BsaBI GATNNNNATC 1 cut(s) 265
BsaHI GRCGYC 3 cut(s) 183, 666, 709
BsaJI CCNNGG 5 cut(s) 270, 502, 606, 704, 882
BsaXI ACNNNNNCTCC 4 cut(s) 92, 106, 122, 136
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 739
Bse118I RCCGGY 1 cut(s) 135
Bse1I ACTGG 2 cut(s) 252, 302
Bse8I GATNNNNATC 1 cut(s) 265
BseDI CCNNGG 5 cut(s) 270, 502, 606, 704, 882
BseGI GGATG 2 cut(s) 95, 222
BseJI GATNNNNATC 1 cut(s) 265
BseLI CCNNNNNNNGG 2 cut(s) 208, 739
BseMII CTCAG 3 cut(s) 462, 698, 716
BseNI ACTGG 2 cut(s) 252, 302
BseRI GAGGAG 7 cut(s) 42, 45, 111, 169, 476, 645, 858
BseX3I CGGCCG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 587
BseYI CCCAGC 2 cut(s) 753, 820
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 5 cut(s) 170, 241, 678, 717, 934
BsiEI CGRYCG 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 309
BsiHKCI CYCGRG 2 cut(s) 235, 437
BsiSI CCGG 5 cut(s) 83, 136, 209, 679, 882
BslFI GGGAC 2 cut(s) 395, 514
BslI CCNNNNNNNGG 2 cut(s) 208, 739
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 2 cut(s) 395, 514
BsnI GGCC 5 cut(s) 170, 241, 678, 717, 934
BsoBI CYCGRG 2 cut(s) 235, 437
Bsp1286I GDGCHC 1 cut(s) 309
Bsp1407I TGTACA 1 cut(s) 543
Bsp143I GATC 3 cut(s) 67, 260, 765
Bsp1720I GCTNAGC 1 cut(s) 471
BspACI CCGC 5 cut(s) 45, 171, 206, 578, 733
BspANI GGCC 5 cut(s) 170, 241, 678, 717, 934
BspCNI CTCAG 3 cut(s) 463, 697, 717
BspLI GGNNCC 3 cut(s) 200, 240, 383
BspMAI CTGCAG 2 cut(s) 75, 577
BspMI ACCTGC 2 cut(s) 50, 186
BspPI GGATC 2 cut(s) 75, 255
BsrFI RCCGGY 1 cut(s) 135
BsrGI TGTACA 1 cut(s) 543
BsrI ACTGG 2 cut(s) 252, 302
BssAI RCCGGY 1 cut(s) 135
BssECI CCNNGG 5 cut(s) 270, 502, 606, 704, 882
BssMI GATC 3 cut(s) 67, 260, 765
BssNI GRCGYC 3 cut(s) 183, 666, 709
BssT1I CCWWGG 2 cut(s) 270, 704
Bst4CI ACNGT 3 cut(s) 58, 541, 655
BstACI GRCGYC 3 cut(s) 183, 666, 709
BstAPI GCANNNNNTGC 1 cut(s) 79
BstAUI TGTACA 1 cut(s) 543
BstC8I GCNNGC 5 cut(s) 75, 133, 137, 491, 524
BstDEI CTNAG 3 cut(s) 471, 684, 725
BstDSI CCRYGG 1 cut(s) 502
BstF5I GGATG 2 cut(s) 95, 222
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 3 cut(s) 70, 263, 768
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 3 cut(s) 67, 260, 765
BstMCI CGRYCG 1 cut(s) 171
BstMWI GCNNNNNNNGC 3 cut(s) 70, 79, 327
BstSCI CCNGG 1 cut(s) 881
BstSFI CTRYAG 2 cut(s) 71, 573
BstV1I GCAGC 1 cut(s) 587
BstV2I GAAGAC 1 cut(s) 656
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BstZI CGGCCG 1 cut(s) 168
BsuI GTATCC 1 cut(s) 760
BsuRI GGCC 5 cut(s) 170, 241, 678, 717, 934
BtgI CCRYGG 1 cut(s) 502
BtsCI GGATG 2 cut(s) 95, 222
BtsIMutI CAGTG 3 cut(s) 309, 619, 899
BveI ACCTGC 2 cut(s) 50, 186
Cac8I GCNNGC 5 cut(s) 75, 133, 137, 491, 524
CfoI GCGC 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 135
Cfr13I GGNCC 2 cut(s) 239, 382
CseI GACGC 3 cut(s) 191, 674, 698
Csp6I GTAC 2 cut(s) 544, 743
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 1 cut(s) 367
CviQI GTAC 2 cut(s) 544, 743
DdeI CTNAG 3 cut(s) 471, 684, 725
DpnI GATC 3 cut(s) 69, 262, 767
DpnII GATC 3 cut(s) 67, 260, 765
EaeI YGGCCR 1 cut(s) 168
EagI CGGCCG 1 cut(s) 168
EclXI CGGCCG 1 cut(s) 168
Eco130I CCWWGG 2 cut(s) 270, 704
Eco47I GGWCC 1 cut(s) 382
Eco52I CGGCCG 1 cut(s) 168
Eco88I CYCGRG 2 cut(s) 235, 437
EcoO109I RGGNCCY 2 cut(s) 239, 382
EcoT14I CCWWGG 2 cut(s) 270, 704
EcoT22I ATGCAT 1 cut(s) 95
ErhI CCWWGG 2 cut(s) 270, 704
FaeI CATG 1 cut(s) 370
FaiI YATR 3 cut(s) 95, 368, 585
FalI AAGNNNNNCTT 2 cut(s) 540, 572
FaqI GGGAC 2 cut(s) 395, 514
FatI CATG 1 cut(s) 366
Fnu4HI GCNGC 5 cut(s) 46, 171, 206, 576, 579
FokI GGATG 2 cut(s) 102, 209
Fsp4HI GCNGC 5 cut(s) 46, 171, 206, 576, 579
FspBI CTAG 2 cut(s) 338, 949
GlaI GCGC 1 cut(s) 49
GluI GCNGC 5 cut(s) 46, 171, 206, 576, 579
GsaI CCCAGC 2 cut(s) 757, 824
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 5 cut(s) 170, 241, 678, 717, 934
HapII CCGG 5 cut(s) 83, 136, 209, 679, 882
HgaI GACGC 3 cut(s) 191, 674, 698
HhaI GCGC 1 cut(s) 50
Hin1I GRCGYC 3 cut(s) 183, 666, 709
Hin1II CATG 1 cut(s) 370
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HincII GTYRAC 1 cut(s) 570
HindII GTYRAC 1 cut(s) 570
HindIII AAGCTT 1 cut(s) 549
HinfI GANTC 6 cut(s) 36, 118, 176, 214, 440, 682
HpaII CCGG 5 cut(s) 83, 136, 209, 679, 882
HphI GGTGA 2 cut(s) 31, 836
Hpy166II GTNNAC 2 cut(s) 544, 570
Hpy188I TCNGA 2 cut(s) 181, 687
Hpy188III TCNNGA 2 cut(s) 125, 662
Hpy8I GTNNAC 2 cut(s) 544, 570
Hpy99I CGWCG 2 cut(s) 148, 185
HpyAV CCTTC 3 cut(s) 781, 833, 892
HpyCH4III ACNGT 3 cut(s) 58, 541, 655
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 4 cut(s) 73, 93, 377, 575
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 79, 327
HpyF3I CTNAG 3 cut(s) 471, 684, 725
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 3 cut(s) 183, 666, 709
Hsp92II CATG 1 cut(s) 370
HspAI GCGC 1 cut(s) 48
KroI GCCGGC 1 cut(s) 135
KroNI GCCGGC 1 cut(s) 137
Kzo9I GATC 3 cut(s) 67, 260, 765
LmnI GCTCC 3 cut(s) 61, 192, 632
Lsp1109I GCAGC 1 cut(s) 587
LweI GCATC 2 cut(s) 80, 118
MaeI CTAG 2 cut(s) 338, 949
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 3 cut(s) 5, 52, 362
MalI GATC 3 cut(s) 69, 262, 767
MboI GATC 3 cut(s) 67, 260, 765
MboII GAAGA 4 cut(s) 26, 29, 661, 823
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 1 cut(s) 510
MlyI GAGTC 3 cut(s) 112, 449, 676
MmeI TCCRAC 4 cut(s) 204, 607, 789, 840
Mph1103I ATGCAT 1 cut(s) 95
MroNI GCCGGC 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 578
MspI CCGG 5 cut(s) 83, 136, 209, 679, 882
MspR9I CCNGG 1 cut(s) 883
MwoI GCNNNNNNNGC 3 cut(s) 70, 79, 327
NaeI GCCGGC 1 cut(s) 137
NciI CCSGG 1 cut(s) 883
NdeII GATC 3 cut(s) 67, 260, 765
NgoMIV GCCGGC 1 cut(s) 135
NlaIII CATG 1 cut(s) 370
NlaIV GGNNCC 3 cut(s) 200, 240, 383
NmeAIII GCCGAG 1 cut(s) 631
NmuCI GTSAC 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 95
PaqCI CACCTGC 1 cut(s) 50
PcsI WCGNNNNNNNCGW 2 cut(s) 149, 291
PdiI GCCGGC 1 cut(s) 137
PfeI GAWTC 3 cut(s) 36, 176, 214
PkrI GCNGC 5 cut(s) 47, 172, 207, 577, 580
PleI GAGTC 3 cut(s) 112, 448, 676
PpsI GAGTC 3 cut(s) 112, 448, 676
PpuMI RGGWCCY 1 cut(s) 382
Psp5II RGGWCCY 1 cut(s) 382
PspFI CCCAGC 2 cut(s) 753, 820
PspN4I GGNNCC 3 cut(s) 200, 240, 383
PspPI GGNCC 2 cut(s) 239, 382
PspPPI RGGWCCY 1 cut(s) 382
PstI CTGCAG 2 cut(s) 75, 577
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 2 cut(s) 545, 744
RsaNI GTAC 2 cut(s) 544, 743
SatI GCNGC 5 cut(s) 46, 171, 206, 576, 579
Sau3AI GATC 3 cut(s) 67, 260, 765
Sau96I GGNCC 2 cut(s) 239, 382
SchI GAGTC 3 cut(s) 112, 449, 676
ScrFI CCNGG 1 cut(s) 883
SduI GDGCHC 1 cut(s) 309
SfaNI GCATC 2 cut(s) 80, 118
SfcI CTRYAG 2 cut(s) 71, 573
SinI GGWCC 1 cut(s) 382
Sse9I AATT 1 cut(s) 510
SsiI CCGC 5 cut(s) 45, 171, 206, 578, 733
SspMI CTAG 2 cut(s) 338, 949
StyD4I CCNGG 1 cut(s) 881
StyI CCWWGG 2 cut(s) 270, 704
TaaI ACNGT 3 cut(s) 58, 541, 655
TaiI ACGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 152, 536
TasI AATT 1 cut(s) 510
TatI WGTACW 1 cut(s) 543
TauI GCSGC 4 cut(s) 48, 173, 208, 581
TfiI GAWTC 3 cut(s) 36, 176, 214
TscAI CASTG 3 cut(s) 309, 619, 899
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 1 cut(s) 575
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 1 cut(s) 491
TspRI CASTG 3 cut(s) 309, 619, 899
VpaK11BI GGWCC 1 cut(s) 382
XspI CTAG 2 cut(s) 338, 949
Zsp2I ATGCAT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.