AT2G02350

F-Box protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
617414 .. 619138
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G02350.2

Sequence Viewer

Length: 534 bp
ATGTTATCTGCAACTGCGATGAATCTATCAAGCATGGCAGATATGTCTCAGCGTTTCCTATGGATTCCATGTCCAGAATCTAGGTTTGAAACAGTAGCGGCGCTTCGCGAAGCATATAGGTTTGAGTTTAATTGCAGAATGAATACTCGTGTCCTTTCTCTAAGAACTCGTTACTCGGTCTACATTGTGTTCAAGAAAGCGGATAATTGGTGTGGCTTTAAGGGTGTGTCTATAGAGGCTGTAGTTGGGATAGTGGGAGAGGAGTCTTTTAGAAGTTTCATATGCTTTGATACGCATGGGAAGGGGCAGGCTCGAAAGAGGAAAGTGGTGGCGAAACCAGAGTTGAGAGAAGATGGGTGGATGGAGACAGAGATTGGGGAATTCTATAATGAAGGAGGATTAATGAGTAGTGATGAGGTTGAGATAAGTACTGTAGAGGGTAAATACGCCCAGCAGAAGCGTGGTTTGGTCATTCTAGGAATTGAAATCCGTCCTGCGAAAATCCTCGAGGAGTTTTCGGTTTGTCGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

177

Amino Acids

20.22

Weight (kDa)

7.59

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 24 - 66 5.6e-06 F-box domain
PP2 PF14299 114 - 282 3.8e-40 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 506
AccI GTMKAC 1 cut(s) 180
AccII CGCG 1 cut(s) 108
AciI CCGC 2 cut(s) 98, 200
AcsI RAATTY 1 cut(s) 380
AfaI GTAC 1 cut(s) 430
AgsI TTSAA 3 cut(s) 89, 193, 485
AjuI GAANNNNNNNTTGG 2 cut(s) 449, 481
Alw26I GTCTC 2 cut(s) 51, 359
Ama87I CYCGRG 1 cut(s) 506
ApoI RAATTY 1 cut(s) 380
AseI ATTAAT 1 cut(s) 401
AspLEI GCGC 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 506
BarI GAAGNNNNNNTAC 2 cut(s) 87, 119
BauI CACGAG 1 cut(s) 147
BccI CCATC 2 cut(s) 347, 355
BcoDI GTCTC 2 cut(s) 51, 359
BfaI CTAG 2 cut(s) 81, 476
BfmI CTRYAG 3 cut(s) 231, 240, 432
BfoI RGCGCY 1 cut(s) 104
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
BmcAI AGTACT 1 cut(s) 430
BmeT110I CYCGRG 1 cut(s) 506
BseGI GGATG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 62
BseRI GAGGAG 2 cut(s) 275, 524
BseYI CCCAGC 1 cut(s) 450
Bsh1236I CGCG 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 506
BsmAI GTCTC 2 cut(s) 51, 359
BsoBI CYCGRG 1 cut(s) 506
Bsp68I TCGCGA 1 cut(s) 108
BspACI CCGC 2 cut(s) 98, 200
BspCNI CTCAG 1 cut(s) 61
BspFNI CGCG 1 cut(s) 108
BssSI CACGAG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 94, 433
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 2 cut(s) 48, 161
BstF5I GGATG 1 cut(s) 366
BstFNI CGCG 1 cut(s) 108
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstMAI GTCTC 2 cut(s) 51, 359
BstSFI CTRYAG 3 cut(s) 231, 240, 432
BstUI CGCG 1 cut(s) 108
BtgZI GCGATG 1 cut(s) 32
BtsCI GGATG 1 cut(s) 366
BtuMI TCGCGA 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 309
CfoI GCGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 429
CviAII CATG 3 cut(s) 34, 69, 296
CviJI RGCY 3 cut(s) 216, 239, 311
CviKI_1 RGCY 3 cut(s) 216, 239, 311
CviQI GTAC 1 cut(s) 429
DdeI CTNAG 2 cut(s) 48, 161
Eco88I CYCGRG 1 cut(s) 506
EcoRI GAATTC 1 cut(s) 380
FaeI CATG 3 cut(s) 37, 72, 299
FatI CATG 3 cut(s) 33, 68, 295
FauNDI CATATG 1 cut(s) 281
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 1 cut(s) 373
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 2 cut(s) 81, 476
GlaI GCGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 99
GsaI CCCAGC 1 cut(s) 454
HaeII RGCGCY 1 cut(s) 104
HhaI GCGC 1 cut(s) 103
Hin1II CATG 3 cut(s) 37, 72, 299
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HinfI GANTC 4 cut(s) 22, 64, 77, 263
Hpy166II GTNNAC 1 cut(s) 181
Hpy188III TCNNGA 3 cut(s) 74, 107, 193
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 2 cut(s) 295, 386
HpyCH4III ACNGT 2 cut(s) 94, 433
HpyCH4V TGCA 2 cut(s) 11, 135
HpyF3I CTNAG 2 cut(s) 48, 161
Hsp92II CATG 3 cut(s) 37, 72, 299
HspAI GCGC 1 cut(s) 101
LpnPI CCDG 5 cut(s) 87, 293, 351, 464, 507
MaeI CTAG 2 cut(s) 81, 476
MaeIII GTNAC 1 cut(s) 170
MboII GAAGA 1 cut(s) 362
MluCI AATT 4 cut(s) 130, 205, 380, 480
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 8 cut(s) 229, 253, 312, 389, 409, 430, 502, 515
MseI TTAA 3 cut(s) 129, 219, 401
MvnI CGCG 1 cut(s) 108
NdeI CATATG 1 cut(s) 281
NlaIII CATG 3 cut(s) 37, 72, 299
NruI TCGCGA 1 cut(s) 108
PaeR7I CTCGAG 1 cut(s) 506
PfeI GAWTC 3 cut(s) 22, 64, 77
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PshBI ATTAAT 1 cut(s) 401
PspFI CCCAGC 1 cut(s) 450
PspXI VCTCGAGB 1 cut(s) 506
RruI TCGCGA 1 cut(s) 108
RsaI GTAC 1 cut(s) 430
RsaNI GTAC 1 cut(s) 429
SaqAI TTAA 3 cut(s) 129, 219, 401
SatI GCNGC 1 cut(s) 99
ScaI AGTACT 1 cut(s) 430
SchI GAGTC 1 cut(s) 272
SetI ASST 3 cut(s) 86, 122, 420
SfcI CTRYAG 3 cut(s) 231, 240, 432
Sfr274I CTCGAG 1 cut(s) 506
SlaI CTCGAG 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 4 cut(s) 130, 205, 380, 480
SsiI CCGC 2 cut(s) 98, 200
SspMI CTAG 2 cut(s) 81, 476
TaaI ACNGT 2 cut(s) 94, 433
TaqI TCGA 2 cut(s) 313, 507
TaqII GACCGA 1 cut(s) 166
TasI AATT 4 cut(s) 130, 205, 380, 480
TatI WGTACW 1 cut(s) 428
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 3 cut(s) 22, 64, 77
Tru1I TTAA 3 cut(s) 129, 219, 401
Tru9I TTAA 3 cut(s) 129, 219, 401
TspDTI ATGAA 4 cut(s) 35, 155, 268, 405
TspGWI ACGGA 1 cut(s) 479
VspI ATTAAT 1 cut(s) 401
XapI RAATTY 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 458
XhoI CTCGAG 1 cut(s) 506
XmiI GTMKAC 1 cut(s) 180
XspI CTAG 2 cut(s) 81, 476
ZrmI AGTACT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.