Rh5BG266700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000189
Physical Location & Seq
Reverse (-)
33328790 .. 33329164
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG266700.1

Sequence Viewer

Length: 375 bp
ATGTGCATGTCCCCACGGGTAAAGCACTTGACAGCTATAAACAAAACAACTAACGTGGCCGGCAACTTTATCATGATAATCACATCAATACAGACAACTTTAGCATTATTGAGCCAGAAAACACGGCTCGATCCATGGCTGGAGAAGAAGGAGAAAGAGGCCTGCGGAACAGTGATGGATCTGCAGCAGATGCCGGAGGGTTGCATAGCCAACATCGTCTCGTTGACGACTCCTAAAGAGGCCTGCCGCCTGTCGTTGCTCTCTAAGAACTTCAAGTTAGCGGCGGAATCCGACGCCGTTTGGGACAAGTTCCTTCCGCCTGAGACACCCACGATCCTGTCCCAGTCCGGTGAATTTGGATTATTGGCCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

124

Amino Acids

13.59

Weight (kDa)

7.64

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 61 - 102 1e-05 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 165, 247, 281, 284, 317, 369
AclWI GGATC 3 cut(s) 125, 186, 328
AcoI YGGCCR 2 cut(s) 57, 366
AcsI RAATTY 1 cut(s) 353
AcyI GRCGYC 1 cut(s) 294
AgsI TTSAA 1 cut(s) 274
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Alw26I GTCTC 2 cut(s) 223, 317
AlwI GGATC 3 cut(s) 125, 186, 328
AoxI GGCC 4 cut(s) 57, 159, 240, 366
ApeKI GCWGC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 353
AsuHPI GGTGA 1 cut(s) 362
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 169
BceAI ACGGC 2 cut(s) 140, 281
BcoDI GTCTC 2 cut(s) 223, 317
BfmI CTRYAG 1 cut(s) 182
BisI GCNGC 4 cut(s) 185, 247, 282, 369
BlsI GCNGC 4 cut(s) 186, 248, 283, 370
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 337
BpmI CTGGAG 1 cut(s) 161
BsaHI GRCGYC 1 cut(s) 294
BsaJI CCNNGG 2 cut(s) 14, 134
BsaWI WCCGGW 1 cut(s) 347
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 343
BseDI CCNNGG 2 cut(s) 14, 134
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 343
BseXI GCAGC 1 cut(s) 196
BshFI GGCC 4 cut(s) 59, 161, 242, 368
BsiSI CCGG 3 cut(s) 60, 194, 348
BslFI GGGAC 2 cut(s) 317, 325
BsmAI GTCTC 2 cut(s) 223, 317
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 2 cut(s) 317, 325
BsnI GGCC 4 cut(s) 59, 161, 242, 368
Bsp143I GATC 3 cut(s) 130, 178, 333
Bsp19I CCATGG 1 cut(s) 134
BspACI CCGC 6 cut(s) 165, 247, 281, 284, 317, 369
BspANI GGCC 4 cut(s) 59, 161, 242, 368
BspCNI CTCAG 1 cut(s) 313
BspHI TCATGA 1 cut(s) 72
BspMAI CTGCAG 1 cut(s) 186
BspPI GGATC 3 cut(s) 125, 186, 328
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 1 cut(s) 343
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 14, 134
BssMI GATC 3 cut(s) 130, 178, 333
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 172
BstACI GRCGYC 1 cut(s) 294
BstAPI GCANNNNNTGC 1 cut(s) 190
BstC8I GCNNGC 3 cut(s) 61, 163, 244
BstDEI CTNAG 2 cut(s) 264, 321
BstDSI CCRYGG 2 cut(s) 14, 134
BstKTI GATC 3 cut(s) 133, 181, 336
BstMAI GTCTC 2 cut(s) 223, 317
BstMBI GATC 3 cut(s) 130, 178, 333
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstNSI RCATGY 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 4 cut(s) 59, 161, 242, 368
BtgI CCRYGG 2 cut(s) 14, 134
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 3 cut(s) 61, 163, 244
CciI TCATGA 1 cut(s) 72
Cfr10I RCCGGY 1 cut(s) 59
CseI GACGC 1 cut(s) 302
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 3 cut(s) 7, 73, 135
CviJI RGCY 9 cut(s) 35, 59, 114, 127, 139, 161, 209, 242, 368
CviKI_1 RGCY 9 cut(s) 35, 59, 114, 127, 139, 161, 209, 242, 368
DdeI CTNAG 2 cut(s) 264, 321
DpnI GATC 3 cut(s) 132, 180, 335
DpnII GATC 3 cut(s) 130, 178, 333
EaeI YGGCCR 2 cut(s) 57, 366
EciI GGCGGA 2 cut(s) 299, 306
Eco130I CCWWGG 1 cut(s) 134
Eco147I AGGCCT 2 cut(s) 161, 242
EcoT14I CCWWGG 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 3 cut(s) 10, 76, 138
FaiI YATR 5 cut(s) 8, 38, 74, 136, 206
FaqI GGGAC 2 cut(s) 317, 325
FatI CATG 3 cut(s) 6, 72, 134
Fnu4HI GCNGC 4 cut(s) 185, 247, 282, 369
Fsp4HI GCNGC 4 cut(s) 185, 247, 282, 369
GluI GCNGC 4 cut(s) 185, 247, 282, 369
GsuI CTGGAG 1 cut(s) 161
HaeIII GGCC 4 cut(s) 59, 161, 242, 368
HapII CCGG 3 cut(s) 60, 194, 348
HgaI GACGC 1 cut(s) 302
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 3 cut(s) 10, 76, 138
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HinfI GANTC 2 cut(s) 229, 287
HpaII CCGG 3 cut(s) 60, 194, 348
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 225
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 2 cut(s) 142, 323
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 3 cut(s) 6, 184, 204
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpyF3I CTNAG 2 cut(s) 264, 321
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 3 cut(s) 10, 76, 138
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Kzo9I GATC 3 cut(s) 130, 178, 333
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 1 cut(s) 180
MaeII ACGT 1 cut(s) 54
MalI GATC 3 cut(s) 132, 180, 335
MboI GATC 3 cut(s) 130, 178, 333
MboII GAAGA 1 cut(s) 157
MflI RGATCY 1 cut(s) 178
MluCI AATT 1 cut(s) 353
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 3 cut(s) 151, 190, 232
MroNI GCCGGC 1 cut(s) 59
MspI CCGG 3 cut(s) 60, 194, 348
MwoI GCNNNNNNNGC 1 cut(s) 190
NaeI GCCGGC 1 cut(s) 61
NcoI CCATGG 1 cut(s) 134
NdeII GATC 3 cut(s) 130, 178, 333
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 3 cut(s) 10, 76, 138
NspI RCATGY 1 cut(s) 10
PagI TCATGA 1 cut(s) 72
PceI AGGCCT 2 cut(s) 161, 242
PdiI GCCGGC 1 cut(s) 61
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 4 cut(s) 186, 248, 283, 370
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PstI CTGCAG 1 cut(s) 186
PsuI RGATCY 1 cut(s) 178
SatI GCNGC 4 cut(s) 185, 247, 282, 369
Sau3AI GATC 3 cut(s) 130, 178, 333
SchI GAGTC 1 cut(s) 223
SetI ASST 2 cut(s) 37, 57
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 182
Sse9I AATT 1 cut(s) 353
SseBI AGGCCT 2 cut(s) 161, 242
SsiI CCGC 6 cut(s) 165, 247, 281, 284, 317, 369
StuI AGGCCT 2 cut(s) 161, 242
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 129
TasI AATT 1 cut(s) 353
TauI GCSGC 3 cut(s) 249, 284, 371
TfiI GAWTC 1 cut(s) 287
TscAI CASTG 1 cut(s) 177
TseI GCWGC 1 cut(s) 184
TspRI CASTG 1 cut(s) 177
XapI RAATTY 1 cut(s) 353
XceI RCATGY 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.