Rh2DG187700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000189
Physical Location & Seq
Forward (+)
16762552 .. 16770735
8184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG187700.1

Sequence Viewer

Length: 480 bp
ATGTCTTACGGATTTGAGTGCCAATCTGTGGAGGTCACAGTTGGAGGAGAAGCTAATAAGCGGATTGTGTTTCTGGAAGATGCGGGGCGGATAAAGAAGAGATCGGTATACTGGACTCACTTTTTGGGTTTGCATGCCGCACTGGTACAGGCACAGTCATCGTCCCAGCCCAGAGAAATCGAATTAGCTCGTCAATATCCAAAGGAAAGAGCTGACGGCTGGTTGGAGATCGAACTGGGTGAATTTTTCTGTGAAGGAGGTGAAGAAGAAGATGGGGAATTGAAGATGACTTGTTCCGAGATCAATGGTGCTTTCGCCAAGGGTGGCCTCATTGTTCAAGGGATTGAGGCACAGTATATAAAACATAAGAAAATCCGTGAGTTCTCACCTTCTGGAGATCAGAAGAAGAAATGGTCACCTGCGCGACATGCCGGAGCCGGACAGTGCTGGATCTGCAGGCGTTGCCCGAAGGGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

159

Amino Acids

17.8

Weight (kDa)

7.61

Isoelectric Point (pI)

62.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 2 - 116 5.7e-16 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 427
Acc36I ACCTGC 1 cut(s) 427
AccB7I CCANNNNNTGG 1 cut(s) 28
AccI GTMKAC 1 cut(s) 108
AccII CGCG 1 cut(s) 424
AciI CCGC 4 cut(s) 61, 83, 88, 138
AclWI GGATC 1 cut(s) 458
AcsI RAATTY 1 cut(s) 242
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 2 cut(s) 283, 338
AluBI AGCT 3 cut(s) 53, 188, 212
AluI AGCT 3 cut(s) 53, 188, 212
AlwI GGATC 1 cut(s) 458
AoxI GGCC 1 cut(s) 325
ApoI RAATTY 1 cut(s) 242
ArsI GACNNNNNNTTYG 2 cut(s) 106, 138
AspLEI GCGC 1 cut(s) 424
AsuHPI GGTGA 4 cut(s) 251, 272, 378, 408
BccI CCATC 1 cut(s) 266
BceAI ACGGC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 141, 175
BfmI CTRYAG 1 cut(s) 454
BfuAI ACCTGC 1 cut(s) 427
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 436
BmrI ACTGGG 1 cut(s) 245
BmsI GCATC 1 cut(s) 70
BmuI ACTGGG 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 414
BsaJI CCNNGG 1 cut(s) 318
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 3 cut(s) 116, 147, 240
BseDI CCNNGG 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 28
BseNI ACTGG 3 cut(s) 116, 147, 240
BseRI GAGGAG 1 cut(s) 60
BseYI CCCAGC 1 cut(s) 165
Bsh1236I CGCG 1 cut(s) 424
BshFI GGCC 1 cut(s) 327
BsiSI CCGG 2 cut(s) 432, 438
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 1 cut(s) 327
Bsp143I GATC 5 cut(s) 101, 228, 300, 397, 450
BspACI CCGC 4 cut(s) 61, 83, 88, 138
BspANI GGCC 1 cut(s) 327
BspFNI CGCG 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 436
BspMAI CTGCAG 1 cut(s) 458
BspMI ACCTGC 1 cut(s) 427
BspPI GGATC 1 cut(s) 458
BsrI ACTGG 3 cut(s) 116, 147, 240
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 5 cut(s) 101, 228, 300, 397, 450
BssNAI GTATAC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 318
Bst1107I GTATAC 1 cut(s) 109
Bst4CI ACNGT 4 cut(s) 40, 156, 354, 444
Bst6I CTCTTC 1 cut(s) 92
BstAPI GCANNNNNTGC 1 cut(s) 462
BstC8I GCNNGC 2 cut(s) 135, 458
BstEII GGTNACC 1 cut(s) 414
BstFNI CGCG 1 cut(s) 424
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 5 cut(s) 104, 231, 303, 400, 453
BstMBI GATC 5 cut(s) 101, 228, 300, 397, 450
BstMWI GCNNNNNNNGC 3 cut(s) 428, 453, 462
BstNSI RCATGY 2 cut(s) 137, 431
BstPI GGTNACC 1 cut(s) 414
BstSFI CTRYAG 1 cut(s) 454
BstUI CGCG 1 cut(s) 424
BstX2I RGATCY 1 cut(s) 450
BstYI RGATCY 1 cut(s) 450
BstZ17I GTATAC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 327
BtsIMutI CAGTG 2 cut(s) 140, 449
BveI ACCTGC 1 cut(s) 427
Cac8I GCNNGC 2 cut(s) 135, 458
CfoI GCGC 1 cut(s) 424
Csp6I GTAC 1 cut(s) 146
CviAII CATG 2 cut(s) 134, 428
CviJI RGCY 7 cut(s) 53, 169, 188, 212, 219, 327, 437
CviKI_1 RGCY 7 cut(s) 53, 169, 188, 212, 219, 327, 437
CviQI GTAC 1 cut(s) 146
DpnI GATC 5 cut(s) 103, 230, 302, 399, 452
DpnII GATC 5 cut(s) 101, 228, 300, 397, 450
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
EciI GGCGGA 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 318
Eco91I GGTNACC 1 cut(s) 414
EcoO65I GGTNACC 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 2 cut(s) 137, 431
FaiI YATR 7 cut(s) 109, 135, 357, 359, 366, 429, 478
FaqI GGGAC 1 cut(s) 148
FatI CATG 2 cut(s) 133, 427
FauI CCCGC 1 cut(s) 76
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
GlaI GCGC 1 cut(s) 423
GluI GCNGC 1 cut(s) 138
GsaI CCCAGC 1 cut(s) 169
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 1 cut(s) 327
HapII CCGG 2 cut(s) 432, 438
HhaI GCGC 1 cut(s) 424
Hin1II CATG 2 cut(s) 137, 431
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HinfI GANTC 1 cut(s) 115
HpaII CCGG 2 cut(s) 432, 438
HphI GGTGA 4 cut(s) 251, 272, 378, 408
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 298, 402
Hpy188III TCNNGA 2 cut(s) 74, 393
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 3 cut(s) 248, 399, 463
HpyCH4III ACNGT 4 cut(s) 40, 156, 354, 444
HpyCH4V TGCA 3 cut(s) 133, 456, 476
HpyF10VI GCNNNNNNNGC 3 cut(s) 428, 453, 462
Hsp92II CATG 2 cut(s) 137, 431
HspAI GCGC 1 cut(s) 422
Kzo9I GATC 5 cut(s) 101, 228, 300, 397, 450
LmnI GCTCC 1 cut(s) 434
LweI GCATC 1 cut(s) 70
MaeIII GTNAC 2 cut(s) 34, 414
MalI GATC 5 cut(s) 103, 230, 302, 399, 452
MboI GATC 5 cut(s) 101, 228, 300, 397, 450
MboII GAAGA 8 cut(s) 89, 109, 275, 278, 281, 295, 415, 418
MflI RGATCY 1 cut(s) 450
MluCI AATT 3 cut(s) 182, 242, 278
MlyI GAGTC 1 cut(s) 109
MmeI TCCRAC 2 cut(s) 22, 204
MnlI CCTC 5 cut(s) 25, 38, 251, 338, 340
MspI CCGG 2 cut(s) 432, 438
MvnI CGCG 1 cut(s) 424
MwoI GCNNNNNNNGC 3 cut(s) 428, 453, 462
NdeII GATC 5 cut(s) 101, 228, 300, 397, 450
NlaIII CATG 2 cut(s) 137, 431
NlaIV GGNNCC 1 cut(s) 436
NmuCI GTSAC 2 cut(s) 34, 414
NspI RCATGY 2 cut(s) 137, 431
PaeI GCATGC 1 cut(s) 137
PaqCI CACCTGC 1 cut(s) 427
PflMI CCANNNNNTGG 1 cut(s) 28
PkrI GCNGC 1 cut(s) 139
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PspEI GGTNACC 1 cut(s) 414
PspFI CCCAGC 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 436
PstI CTGCAG 1 cut(s) 458
PsuI RGATCY 1 cut(s) 450
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 5 cut(s) 101, 228, 300, 397, 450
SchI GAGTC 1 cut(s) 109
SetI ASST 7 cut(s) 36, 55, 190, 214, 262, 391, 421
SfaNI GCATC 1 cut(s) 70
SfcI CTRYAG 1 cut(s) 454
SphI GCATGC 1 cut(s) 137
Sse9I AATT 3 cut(s) 182, 242, 278
SsiI CCGC 4 cut(s) 61, 83, 88, 138
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 4 cut(s) 40, 156, 354, 444
TaqI TCGA 2 cut(s) 180, 231
TasI AATT 3 cut(s) 182, 242, 278
TauI GCSGC 1 cut(s) 140
TscAI CASTG 2 cut(s) 147, 449
TseFI GTSAC 2 cut(s) 34, 414
Tsp45I GTSAC 2 cut(s) 34, 414
TspGWI ACGGA 2 cut(s) 24, 365
TspRI CASTG 2 cut(s) 147, 449
Van91I CCANNNNNTGG 1 cut(s) 28
XapI RAATTY 1 cut(s) 242
XceI RCATGY 2 cut(s) 137, 431
XmiI GTMKAC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.