Rh6BG370500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000189
Physical Location & Seq
Forward (+)
60008893 .. 60013253
4361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG370500.1

Sequence Viewer

Length: 213 bp
ATGAGATTGGGTGCAAAAAAAATAGACGCCGTACGGTCTTCTTTCAATAATGTTGCAGATGGTTACCAGCTGCAATTGTTCTGGTTATCAAGTACACTTCAATTAAGCACAGAGTGCTCTCCAGTCTCGCATCCTACTGCTGTTGTAGTCTGCGATTTAGGTACTCCTCGAGCTTTTCGCCTTGTATCAATTTGTTGTTTTGATGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.71

Weight (kDa)

6.51

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 27
AdeI CACNNNGTG 1 cut(s) 114
AfaI GTAC 3 cut(s) 33, 94, 163
AgsI TTSAA 2 cut(s) 46, 101
AluBI AGCT 2 cut(s) 70, 173
AluI AGCT 2 cut(s) 70, 173
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 130
Ama87I CYCGRG 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 57
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 130
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
BmeT110I CYCGRG 1 cut(s) 168
BmsI GCATC 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 130
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 168
BsiWI CGTACG 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 130
BsoBI CYCGRG 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 119
BsrI ACTGG 1 cut(s) 122
BssNI GRCGYC 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 27
BstAPI GCANNNNNTGC 1 cut(s) 114
BstEII GGTNACC 1 cut(s) 62
BstF5I GGATG 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstPI GGTNACC 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 30
BtsCI GGATG 1 cut(s) 130
CseI GACGC 1 cut(s) 35
Csp6I GTAC 3 cut(s) 32, 93, 162
CviJI RGCY 2 cut(s) 70, 173
CviKI_1 RGCY 2 cut(s) 70, 173
CviQI GTAC 3 cut(s) 32, 93, 162
DraIII CACNNNGTG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 168
Eco91I GGTNACC 1 cut(s) 62
EcoO65I GGTNACC 1 cut(s) 62
FaiI YATR 1 cut(s) 209
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 105
HgaI GACGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 27
Hpy166II GTNNAC 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 14, 56, 73
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 27
LpnPI CCDG 3 cut(s) 67, 80, 135
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 62
MboII GAAGA 1 cut(s) 30
MfeI CAATTG 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 3 cut(s) 74, 101, 189
MnlI CCTC 1 cut(s) 177
MseI TTAA 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 70
MunI CAATTG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 114
PaeR7I CTCGAG 1 cut(s) 168
Pfl23II CGTACG 1 cut(s) 31
PkrI GCNGC 1 cut(s) 72
PspEI GGTNACC 1 cut(s) 62
PspLI CGTACG 1 cut(s) 31
PspXI VCTCGAGB 1 cut(s) 168
PvuII CAGCTG 1 cut(s) 70
RsaI GTAC 3 cut(s) 33, 94, 163
RsaNI GTAC 3 cut(s) 32, 93, 162
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 1 cut(s) 71
SduI GDGCHC 1 cut(s) 119
SetI ASST 3 cut(s) 72, 163, 175
SfaNI GCATC 1 cut(s) 139
Sfr274I CTCGAG 1 cut(s) 168
SgeI CNNG 8 cut(s) 79, 94, 102, 134, 139, 180, 182, 194
SlaI CTCGAG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
Sse9I AATT 3 cut(s) 74, 101, 189
TaaI ACNGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 169
TasI AATT 3 cut(s) 74, 101, 189
TatI WGTACW 1 cut(s) 92
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TseI GCWGC 1 cut(s) 70
XhoI CTCGAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.