Rroxscaffold_6G00426740

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000189
Physical Location & Seq
Forward (+)
47420633 .. 47424046
3414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00426740.1

Sequence Viewer

Length: 801 bp
ATGCTGTCCCCATCCACAACGTATAAAGCTTATCTGGTGTACAAGTTAACTAAACGCACTTATGGACTAGACTGGCCTGCCGTGGTCAAAGTTGGTGCAAGAGCTTATGGATTTGATTATGAATGCCCTGGTTTGAAGGAAATAACTACAGGCATTTGGCACACTGCGATTCTGGTGCCCCAAAGAAAAATACAAGGACATCTCGCAAGACATCATGAAATCAATGAAGTTAGATTTCCAAATGAAAGCAGGGCTGATGGGTGGCTGGAGATGGAGCTGGGTGAGTTTCACTGTCAAGGAGACGAAGACGTGGAGTTGGAAATGATTTGTTGTGGGACTAGTATGGGTAAGAGTGGTCTCCTTGTTCAAGGGATTGAGCCGGCATGCGACCGGATAACTGCTAATGTGACCGAAGTGACTTCCGTCACCGCCTTGCTGGCCAACATGGGAAACGAGAGGTCGTCGTTGATTACGAGGGATTTCAAGTCGGCGGCGGACTCCGATGCCTTTTGGGACAAGTTCCTTCCGCATGAGACCAATGAGATCCTATCCCACTCCGAATCTGCAATCCACGCCAAATCCAAGAAGGAGCTTTACTTCACTCTCTCTCACAACCCCATCCTCATCGACGATGGCAAGATGAGCTTTTCACTTGACAAATGGAGTGGGAAGAAGTGCTATATGATAGCTGCAAAGCGCCTTCGGATTGCTTGGGGTGATACTGCTTACTATTGGAATTGGAAATCTCTGCTGAGTGCAGGTCCGTACATTTCTTTTACCATTCTTACTCGTAGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

266

Amino Acids

30.08

Weight (kDa)

6.51

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 1 - 126 3.8e-16 Phloem protein 2
PP2 PF14299 224 - 249 2.1e-06 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 749
AccB1I GGYRCC 1 cut(s) 175
AciI CCGC 4 cut(s) 429, 491, 494, 527
AclWI GGATC 1 cut(s) 538
AcoI YGGCCR 1 cut(s) 438
AfaI GTAC 2 cut(s) 41, 767
AgsI TTSAA 3 cut(s) 136, 368, 484
AhlI ACTAGT 1 cut(s) 338
AjiI CACGTC 1 cut(s) 310
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 6 cut(s) 29, 104, 277, 592, 645, 689
AluI AGCT 6 cut(s) 29, 104, 277, 592, 645, 689
Alw26I GTCTC 3 cut(s) 294, 362, 527
AlwI GGATC 1 cut(s) 538
AoxI GGCC 2 cut(s) 74, 438
ApeKI GCWGC 1 cut(s) 689
AspLEI GCGC 1 cut(s) 699
AspS9I GGNCC 1 cut(s) 761
AsuHPI GGTGA 3 cut(s) 293, 418, 728
AvaII GGWCC 1 cut(s) 761
BaeGI GKGCMC 1 cut(s) 180
BalI TGGCCA 1 cut(s) 440
BanI GGYRCC 1 cut(s) 175
BarI GAAGNNNNNNTAC 2 cut(s) 578, 610
BbsI GAAGAC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 676
BccI CCATC 5 cut(s) 19, 251, 265, 626, 626
BceAI ACGGC 1 cut(s) 65
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 1 cut(s) 129
BcoDI GTCTC 3 cut(s) 294, 362, 527
BcuI ACTAGT 1 cut(s) 338
BfaI CTAG 2 cut(s) 68, 339
BfmI CTRYAG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 700
BfuAI ACCTGC 1 cut(s) 749
BglI GCCNNNNNGGC 1 cut(s) 437
BisI GCNGC 2 cut(s) 492, 690
BlsI GCNGC 2 cut(s) 493, 691
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 761
BmgBI CACGTC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 761
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 493
BoxI GACNNNNGTC 1 cut(s) 422
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 287
BsaI GGTCTC 2 cut(s) 362, 527
BsaJI CCNNGG 2 cut(s) 81, 127
BsaWI WCCGGW 1 cut(s) 390
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 81, 127
BseGI GGATG 2 cut(s) 11, 618
BseMII CTCAG 1 cut(s) 743
BseNI ACTGG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 180
BseXI GCAGC 1 cut(s) 676
BseYI CCCAGC 1 cut(s) 277
BsgI GTGCAG 1 cut(s) 777
Bsh1285I CGRYCG 1 cut(s) 391
BshFI GGCC 2 cut(s) 76, 440
BshNI GGYRCC 1 cut(s) 175
BsiEI CGRYCG 1 cut(s) 391
BsiSI CCGG 2 cut(s) 380, 391
BslFI GGGAC 2 cut(s) 349, 527
BsmAI GTCTC 3 cut(s) 294, 362, 527
BsmBI CGTCTC 1 cut(s) 294
BsmFI GGGAC 2 cut(s) 349, 527
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 2 cut(s) 76, 440
Bso31I GGTCTC 2 cut(s) 362, 527
Bsp1286I GDGCHC 1 cut(s) 180
Bsp1407I TGTACA 1 cut(s) 39
Bsp143I GATC 1 cut(s) 543
BspACI CCGC 4 cut(s) 429, 491, 494, 527
BspANI GGCC 2 cut(s) 76, 440
BspCNI CTCAG 1 cut(s) 744
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 177
BspMI ACCTGC 1 cut(s) 749
BspPI GGATC 1 cut(s) 538
BspT107I GGYRCC 1 cut(s) 175
BspTNI GGTCTC 2 cut(s) 362, 527
BsrFI RCCGGY 1 cut(s) 379
BsrGI TGTACA 1 cut(s) 39
BsrI ACTGG 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 2 cut(s) 81, 127
BssMI GATC 1 cut(s) 543
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 293
BstAUI TGTACA 1 cut(s) 39
BstC8I GCNNGC 4 cut(s) 78, 381, 385, 438
BstDEI CTNAG 1 cut(s) 752
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 11, 618
BstH2I RGCGCY 1 cut(s) 700
BstHHI GCGC 1 cut(s) 699
BstKTI GATC 1 cut(s) 546
BstMAI GTCTC 3 cut(s) 294, 362, 527
BstMBI GATC 1 cut(s) 543
BstMCI CGRYCG 1 cut(s) 391
BstMWI GCNNNNNNNGC 3 cut(s) 437, 572, 642
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 387
BstPAI GACNNNNGTC 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 147
BstSLI GKGCMC 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 676
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 543
BstYI RGATCY 1 cut(s) 543
BsuRI GGCC 2 cut(s) 76, 440
BtgI CCRYGG 1 cut(s) 81
BtrI CACGTC 1 cut(s) 310
BtsCI GGATG 2 cut(s) 11, 618
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 162, 289
BveI ACCTGC 1 cut(s) 749
Cac8I GCNNGC 4 cut(s) 78, 381, 385, 438
CciI TCATGA 1 cut(s) 214
CfoI GCGC 1 cut(s) 699
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 1 cut(s) 761
Csp6I GTAC 2 cut(s) 40, 766
CspCI CAANNNNNGTGG 2 cut(s) 646, 681
CviAII CATG 4 cut(s) 215, 384, 445, 530
CviQI GTAC 2 cut(s) 40, 766
DdeI CTNAG 1 cut(s) 752
DpnI GATC 1 cut(s) 545
DpnII GATC 1 cut(s) 543
EaeI YGGCCR 1 cut(s) 438
EciI GGCGGA 1 cut(s) 509
Eco31I GGTCTC 2 cut(s) 362, 527
Eco47I GGWCC 1 cut(s) 761
EcoRII CCWGG 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 294
FaeI CATG 4 cut(s) 218, 387, 448, 533
FalI AAGNNNNNCTT 2 cut(s) 629, 661
FaqI GGGAC 2 cut(s) 349, 527
FatI CATG 4 cut(s) 214, 383, 444, 529
Fnu4HI GCNGC 2 cut(s) 492, 690
FokI GGATG 1 cut(s) 605
Fsp4HI GCNGC 2 cut(s) 492, 690
FspBI CTAG 2 cut(s) 68, 339
GlaI GCGC 1 cut(s) 698
GluI GCNGC 2 cut(s) 492, 690
GsaI CCCAGC 1 cut(s) 281
GsuI CTGGAG 1 cut(s) 287
HaeII RGCGCY 1 cut(s) 700
HaeIII GGCC 2 cut(s) 76, 440
HapII CCGG 2 cut(s) 380, 391
HhaI GCGC 1 cut(s) 699
Hin1II CATG 4 cut(s) 218, 387, 448, 533
Hin6I GCGC 1 cut(s) 697
HinP1I GCGC 1 cut(s) 697
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 3 cut(s) 169, 497, 560
HpaI GTTAAC 1 cut(s) 48
HpaII CCGG 2 cut(s) 380, 391
HphI GGTGA 3 cut(s) 293, 418, 728
Hpy166II GTNNAC 2 cut(s) 40, 48
Hpy188I TCNGA 3 cut(s) 502, 559, 705
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 2 cut(s) 40, 48
Hpy99I CGWCG 2 cut(s) 466, 632
HpyAV CCTTC 4 cut(s) 130, 533, 580, 710
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 2 cut(s) 20, 309
HpyCH4V TGCA 4 cut(s) 98, 566, 692, 758
HpyF10VI GCNNNNNNNGC 3 cut(s) 437, 572, 642
HpyF3I CTNAG 1 cut(s) 752
HpySE526I ACGT 2 cut(s) 20, 309
Hsp92II CATG 4 cut(s) 218, 387, 448, 533
HspAI GCGC 1 cut(s) 697
KroI GCCGGC 1 cut(s) 379
KroNI GCCGGC 1 cut(s) 381
KspAI GTTAAC 1 cut(s) 48
Kzo9I GATC 1 cut(s) 543
LmnI GCTCC 2 cut(s) 274, 589
Lsp1109I GCAGC 1 cut(s) 676
LweI GCATC 1 cut(s) 493
MaeI CTAG 2 cut(s) 68, 339
MaeII ACGT 2 cut(s) 20, 309
MaeIII GTNAC 3 cut(s) 406, 415, 424
MalI GATC 1 cut(s) 545
MboI GATC 1 cut(s) 543
MboII GAAGA 2 cut(s) 317, 682
MflI RGATCY 1 cut(s) 543
MhlI GDGCHC 1 cut(s) 180
MlsI TGGCCA 1 cut(s) 440
MluCI AATT 1 cut(s) 736
MluNI TGGCCA 1 cut(s) 440
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 3 cut(s) 450, 468, 632
Mox20I TGGCCA 1 cut(s) 440
MroNI GCCGGC 1 cut(s) 379
MscI TGGCCA 1 cut(s) 440
MseI TTAA 2 cut(s) 47, 799
Msp20I TGGCCA 1 cut(s) 440
MspI CCGG 2 cut(s) 380, 391
MspR9I CCNGG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 128
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 3 cut(s) 437, 572, 642
NaeI GCCGGC 1 cut(s) 381
NdeII GATC 1 cut(s) 543
NgoMIV GCCGGC 1 cut(s) 379
NlaIII CATG 4 cut(s) 218, 387, 448, 533
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 3 cut(s) 406, 415, 424
NspI RCATGY 1 cut(s) 387
PaeI GCATGC 1 cut(s) 387
PagI TCATGA 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 470
PctI GAATGC 1 cut(s) 128
PdiI GCCGGC 1 cut(s) 381
PfeI GAWTC 2 cut(s) 169, 560
PkrI GCNGC 2 cut(s) 493, 691
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
PshAI GACNNNNGTC 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 277
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 761
PsuI RGATCY 1 cut(s) 543
RsaI GTAC 2 cut(s) 41, 767
RsaNI GTAC 2 cut(s) 40, 766
SaqAI TTAA 2 cut(s) 47, 799
SatI GCNGC 2 cut(s) 492, 690
Sau3AI GATC 1 cut(s) 543
Sau96I GGNCC 1 cut(s) 761
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 1 cut(s) 180
SfaNI GCATC 1 cut(s) 493
SfcI CTRYAG 1 cut(s) 147
SinI GGWCC 1 cut(s) 761
SpeI ACTAGT 1 cut(s) 338
SphI GCATGC 1 cut(s) 387
Sse9I AATT 1 cut(s) 736
SsiI CCGC 4 cut(s) 429, 491, 494, 527
SspMI CTAG 2 cut(s) 68, 339
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 2 cut(s) 23, 312
TaqI TCGA 1 cut(s) 627
TaqII GACCGA 1 cut(s) 425
TasI AATT 1 cut(s) 736
TatI WGTACW 1 cut(s) 39
TauI GCSGC 1 cut(s) 494
TfiI GAWTC 2 cut(s) 169, 560
Tru1I TTAA 2 cut(s) 47, 799
Tru9I TTAA 2 cut(s) 47, 799
TscAI CASTG 2 cut(s) 169, 296
TseFI GTSAC 3 cut(s) 406, 415, 424
TseI GCWGC 1 cut(s) 689
Tsp45I GTSAC 3 cut(s) 406, 415, 424
TspDTI ATGAA 4 cut(s) 135, 231, 240, 258
TspGWI ACGGA 2 cut(s) 412, 753
TspRI CASTG 2 cut(s) 169, 296
VpaK11BI GGWCC 1 cut(s) 761
XceI RCATGY 1 cut(s) 387
XspI CTAG 2 cut(s) 68, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.